Wall clock time and date at job start Tue Mar 31 2020 11:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48505 * 109.46929 * 269.99756 * 3 2 1 5 5 H 1.48496 * 109.47273 * 29.99744 * 3 2 1 6 6 H 1.48502 * 109.46870 * 150.00198 * 3 2 1 7 7 C 1.37871 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47521 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46978 * 300.00138 * 10 9 7 12 12 C 1.53001 * 109.46837 * 299.99800 * 11 10 9 13 13 N 1.46894 * 109.47264 * 180.02562 * 12 11 10 14 14 C 1.46840 * 111.00425 * 179.97438 * 13 12 11 15 15 C 1.53038 * 109.52871 * 185.83439 * 14 13 12 16 16 C 1.53120 * 109.27877 * 300.82518 * 15 14 13 17 17 C 1.50703 * 109.52022 * 177.55315 * 16 15 14 18 18 C 1.38654 * 120.78409 * 120.12478 * 17 16 15 19 19 C 1.38209 * 119.15786 * 180.02562 * 18 17 16 20 20 N 1.31870 * 120.76375 * 0.26353 * 19 18 17 21 21 C 1.31872 * 121.72489 * 359.46946 * 20 19 18 22 22 C 1.38200 * 120.76402 * 0.52682 * 21 20 19 23 23 C 1.53120 * 109.21292 * 57.61829 * 16 15 14 24 24 C 1.46850 * 110.99919 * 304.20913 * 13 12 11 25 25 C 1.52992 * 109.47349 * 59.99824 * 12 11 10 26 26 C 1.52998 * 109.47566 * 300.00306 * 25 12 11 27 27 H 0.96999 * 119.99794 * 359.97438 * 1 2 3 28 28 H 1.09010 * 109.46943 * 300.00050 * 9 7 2 29 29 H 1.08995 * 109.47709 * 179.97438 * 10 9 7 30 30 H 1.09002 * 109.47342 * 59.99569 * 10 9 7 31 31 H 1.09001 * 109.47043 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.47112 * 59.99375 * 11 10 9 33 33 H 1.09002 * 109.47262 * 300.00264 * 12 11 10 34 34 H 1.09008 * 109.46314 * 65.81988 * 14 13 12 35 35 H 1.09001 * 109.45705 * 305.85162 * 14 13 12 36 36 H 1.08999 * 109.50616 * 180.87945 * 15 14 13 37 37 H 1.09002 * 109.49549 * 60.76251 * 15 14 13 38 38 H 1.08996 * 109.52329 * 297.68098 * 16 15 14 39 39 H 1.07995 * 120.42251 * 0.04566 * 18 17 16 40 40 H 1.08002 * 119.61346 * 179.97438 * 19 18 17 41 41 H 1.08004 * 119.61160 * 180.27376 * 21 20 19 42 42 H 1.08003 * 120.41583 * 179.72635 * 22 21 20 43 43 H 1.09004 * 109.50312 * 62.32192 * 23 16 15 44 44 H 1.08999 * 109.50076 * 182.43303 * 23 16 15 45 45 H 1.08998 * 109.46181 * 294.17541 * 24 13 12 46 46 H 1.08999 * 109.46115 * 54.15280 * 24 13 12 47 47 H 1.09009 * 109.47219 * 60.00168 * 25 12 11 48 48 H 1.08994 * 109.47648 * 179.97438 * 25 12 11 49 49 H 1.09000 * 109.47327 * 300.00160 * 26 25 12 50 50 H 1.08995 * 109.47764 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 3.1258 -3.5805 -1.2500 12 6 2.2471 -3.6609 -2.4999 13 7 3.0925 -3.5832 -3.6987 14 6 2.2815 -3.6581 -4.9205 15 6 3.2013 -3.7208 -6.1420 16 6 4.0883 -2.4730 -6.1715 17 6 5.0378 -2.5577 -7.3387 18 6 5.0278 -1.5916 -8.3332 19 6 5.9130 -1.7026 -9.3888 20 7 6.7558 -2.7144 -9.4588 21 6 6.7967 -3.6484 -8.5288 22 6 5.9417 -3.6037 -7.4439 23 6 4.8865 -2.3912 -4.8674 24 6 3.9182 -2.3689 -3.6825 25 6 1.2529 -2.4981 -2.5002 26 6 0.3723 -2.5796 -1.2516 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5575 0.8881 29 1 1.7003 -4.6060 -0.0018 30 1 2.8713 -3.6048 0.8890 31 1 3.8344 -4.4087 -1.2496 32 1 3.6708 -2.6365 -1.2492 33 1 1.7020 -4.6049 -2.5008 34 1 1.6460 -2.7751 -4.9893 35 1 1.6586 -4.5520 -4.8886 36 1 2.5989 -3.7606 -7.0495 37 1 3.8273 -4.6110 -6.0807 38 1 3.4645 -1.5850 -6.2731 39 1 4.3373 -0.7627 -8.2835 40 1 5.9112 -0.9545 -10.1677 41 1 7.5038 -4.4599 -8.6181 42 1 5.9770 -4.3740 -6.6877 43 1 5.5399 -3.2599 -4.7855 44 1 5.4873 -1.4818 -4.8649 45 1 3.2755 -1.4917 -3.7569 46 1 4.4839 -2.3268 -2.7518 47 1 1.7979 -1.5540 -2.4994 48 1 0.6272 -2.5551 -3.3908 49 1 -0.1727 -3.5236 -1.2523 50 1 -0.3357 -1.7509 -1.2515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:38 Heat of formation + Delta-G solvation = 13.926893 kcal Electronic energy + Delta-G solvation = -27098.009871 eV Core-core repulsion = 23702.557301 eV Total energy + Delta-G solvation = -3395.452570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58668 -39.36646 -37.10269 -34.49003 -32.33569 -31.39780 -30.94502 -30.82546 -29.50189 -28.00393 -25.18038 -24.33525 -23.67235 -23.16777 -22.18169 -21.38367 -20.38909 -19.36800 -18.32489 -17.01726 -16.34282 -15.85048 -15.73518 -15.54982 -14.79692 -14.53349 -14.28025 -14.10618 -13.97380 -13.91642 -13.47328 -13.41658 -13.09335 -12.94459 -12.66282 -12.17028 -11.97341 -11.71888 -11.51217 -11.30959 -11.09427 -11.01669 -10.89572 -10.78405 -10.67389 -10.57793 -10.48849 -10.12594 -9.92608 -9.72828 -9.57905 -9.50433 -9.31867 -9.16097 -8.93202 -8.64879 -8.30717 -7.70986 -5.97698 -4.01995 0.96935 1.10196 3.26463 3.34842 3.37314 3.64862 4.23306 4.28686 4.40152 4.42509 4.53313 4.88232 4.91715 4.98880 5.00766 5.18830 5.31330 5.32967 5.47520 5.53680 5.59055 5.60306 5.63854 5.68854 5.75445 5.86170 5.88767 5.95393 6.01543 6.09905 6.10854 6.24019 6.25257 6.33786 6.40038 6.48404 6.53609 6.54616 6.56042 6.73873 6.76970 6.86935 7.09153 7.16572 7.38074 7.49441 7.54967 7.62833 7.75023 7.79907 7.95067 8.15932 8.48689 9.00624 9.61064 11.08052 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.003400 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.637084 B = 8234.139483 C = 9036.506069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.499 4.499 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.107 4.107 11 C -0.099 4.099 12 C 0.091 3.909 13 N -0.533 5.533 14 C 0.053 3.947 15 C -0.103 4.103 16 C -0.054 4.054 17 C -0.023 4.023 18 C -0.173 4.173 19 C 0.096 3.904 20 N -0.494 5.494 21 C 0.096 3.904 22 C -0.166 4.166 23 C -0.105 4.105 24 C 0.049 3.951 25 C -0.129 4.129 26 C -0.104 4.104 27 H 0.258 0.742 28 H 0.023 0.977 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.136 0.864 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.031 0.969 49 H 0.012 0.988 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.143 -6.557 -14.561 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.145 4.145 11 C -0.136 4.136 12 C -0.017 4.017 13 N -0.256 5.256 14 C -0.075 4.075 15 C -0.141 4.141 16 C -0.073 4.073 17 C -0.031 4.031 18 C -0.193 4.193 19 C -0.060 4.060 20 N -0.204 5.204 21 C -0.060 4.060 22 C -0.186 4.186 23 C -0.143 4.143 24 C -0.079 4.079 25 C -0.168 4.168 26 C -0.143 4.143 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.031 0.969 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.889 -6.897 -15.272 18.969 hybrid contribution -0.776 1.827 0.654 2.090 sum 8.113 -5.070 -14.618 17.470 Atomic orbital electron populations 1.69873 1.05801 1.26096 1.51265 1.24930 0.94731 0.98711 0.95571 0.86771 0.80079 0.84247 0.78000 1.20900 1.21335 1.19951 1.21140 0.92641 0.90448 1.49469 0.92789 1.18693 0.92723 0.92125 0.93992 1.21547 0.98270 0.98574 0.96083 1.21501 0.97366 1.01116 0.93660 1.21716 0.92969 0.98214 0.88752 1.62267 1.23886 1.37558 1.01933 1.22031 0.94751 1.00988 0.89720 1.21625 0.97790 0.97164 0.97520 1.20338 0.95095 0.99784 0.92036 1.20399 0.94680 0.93106 0.94935 1.22121 1.01229 1.00317 0.95643 1.22723 0.91185 0.95323 0.96792 1.67660 1.21948 1.02709 1.28038 1.22744 0.96942 0.96536 0.89816 1.22058 0.96976 0.99583 0.99969 1.21660 0.97780 1.02106 0.92734 1.22138 0.95631 0.91733 0.98379 1.21981 0.97819 0.99242 0.97740 1.21449 0.98657 0.99239 0.94916 0.93214 0.95875 0.94827 0.93484 0.93836 0.91049 0.91465 0.94394 0.91017 0.91914 0.91015 0.90281 0.84951 0.83000 0.82950 0.84636 0.91076 0.91789 0.94148 0.89703 0.90949 0.95079 0.96877 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -12.88 6.61 -34.44 -0.23 -13.11 16 8 H 0.05 1.39 6.71 -52.48 -0.35 1.04 16 9 C 0.04 1.03 2.59 -91.77 -0.24 0.79 16 10 C -0.11 -2.15 5.41 -26.73 -0.14 -2.29 16 11 C -0.10 -1.80 4.62 -26.73 -0.12 -1.93 16 12 C 0.09 1.58 2.29 -67.72 -0.16 1.43 16 13 N -0.53 -7.98 4.68 -226.70 -1.06 -9.04 16 14 C 0.05 0.71 4.89 -3.84 -0.02 0.69 16 15 C -0.10 -1.13 5.23 -26.65 -0.14 -1.27 16 16 C -0.05 -0.59 2.46 -91.65 -0.23 -0.82 16 17 C -0.02 -0.24 4.80 -104.32 -0.50 -0.74 16 18 C -0.17 -1.71 9.77 -39.44 -0.39 -2.09 16 19 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 20 N -0.49 -5.63 10.36 -13.25 -0.14 -5.77 16 21 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 22 C -0.17 -1.63 8.79 -39.45 -0.35 -1.98 16 23 C -0.10 -1.26 5.24 -26.65 -0.14 -1.40 16 24 C 0.05 0.73 4.67 -3.83 -0.02 0.71 16 25 C -0.13 -2.58 4.30 -26.74 -0.11 -2.69 16 26 C -0.10 -2.37 5.24 -26.73 -0.14 -2.51 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.40 4.69 -51.93 -0.24 1.16 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.55 6.63 -51.92 -0.34 0.20 16 35 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.78 7.40 -51.93 -0.38 0.39 16 38 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 39 H 0.13 1.09 8.01 -52.49 -0.42 0.67 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.14 1.17 7.24 -52.48 -0.38 0.79 16 43 H 0.07 0.83 7.40 -51.93 -0.38 0.44 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 46 H 0.08 1.34 5.90 -51.93 -0.31 1.04 16 47 H 0.07 1.62 5.71 -51.92 -0.30 1.32 16 48 H 0.03 0.58 6.54 -51.93 -0.34 0.24 16 49 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -27.78 366.44 -11.79 -39.57 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.31 Total: 2.30 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -3.40 Total: -24.14 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: -0.57 Total: -38.99 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.78 -11.79 -39.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.495 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds