Wall clock time and date at job start Tue Mar 31 2020 11:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48505 * 109.46929 * 269.99756 * 3 2 1 5 5 H 1.48496 * 109.47273 * 29.99744 * 3 2 1 6 6 H 1.48502 * 109.46870 * 150.00198 * 3 2 1 7 7 C 1.37871 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47521 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46978 * 300.00138 * 10 9 7 12 12 C 1.53001 * 109.46837 * 299.99800 * 11 10 9 13 13 N 1.46894 * 109.47264 * 180.02562 * 12 11 10 14 14 C 1.46840 * 111.00425 * 179.97438 * 13 12 11 15 15 C 1.53038 * 109.52871 * 185.83439 * 14 13 12 16 16 C 1.53120 * 109.27877 * 300.82518 * 15 14 13 17 17 C 1.50703 * 109.52022 * 177.55315 * 16 15 14 18 18 C 1.38654 * 120.78409 * 120.12478 * 17 16 15 19 19 C 1.38209 * 119.15786 * 180.02562 * 18 17 16 20 20 N 1.31870 * 120.76375 * 0.26353 * 19 18 17 21 21 C 1.31872 * 121.72489 * 359.46946 * 20 19 18 22 22 C 1.38200 * 120.76402 * 0.52682 * 21 20 19 23 23 C 1.53120 * 109.21292 * 57.61829 * 16 15 14 24 24 C 1.46850 * 110.99919 * 304.20913 * 13 12 11 25 25 C 1.52992 * 109.47349 * 59.99824 * 12 11 10 26 26 C 1.52998 * 109.47566 * 300.00306 * 25 12 11 27 27 H 0.96999 * 119.99794 * 359.97438 * 1 2 3 28 28 H 1.09010 * 109.46943 * 300.00050 * 9 7 2 29 29 H 1.08995 * 109.47709 * 179.97438 * 10 9 7 30 30 H 1.09002 * 109.47342 * 59.99569 * 10 9 7 31 31 H 1.09001 * 109.47043 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.47112 * 59.99375 * 11 10 9 33 33 H 1.09002 * 109.47262 * 300.00264 * 12 11 10 34 34 H 1.09008 * 109.46314 * 65.81988 * 14 13 12 35 35 H 1.09001 * 109.45705 * 305.85162 * 14 13 12 36 36 H 1.08999 * 109.50616 * 180.87945 * 15 14 13 37 37 H 1.09002 * 109.49549 * 60.76251 * 15 14 13 38 38 H 1.08996 * 109.52329 * 297.68098 * 16 15 14 39 39 H 1.07995 * 120.42251 * 0.04566 * 18 17 16 40 40 H 1.08002 * 119.61346 * 179.97438 * 19 18 17 41 41 H 1.08004 * 119.61160 * 180.27376 * 21 20 19 42 42 H 1.08003 * 120.41583 * 179.72635 * 22 21 20 43 43 H 1.09004 * 109.50312 * 62.32192 * 23 16 15 44 44 H 1.08999 * 109.50076 * 182.43303 * 23 16 15 45 45 H 1.08998 * 109.46181 * 294.17541 * 24 13 12 46 46 H 1.08999 * 109.46115 * 54.15280 * 24 13 12 47 47 H 1.09009 * 109.47219 * 60.00168 * 25 12 11 48 48 H 1.08994 * 109.47648 * 179.97438 * 25 12 11 49 49 H 1.09000 * 109.47327 * 300.00160 * 26 25 12 50 50 H 1.08995 * 109.47764 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 3.1258 -3.5805 -1.2500 12 6 2.2471 -3.6609 -2.4999 13 7 3.0925 -3.5832 -3.6987 14 6 2.2815 -3.6581 -4.9205 15 6 3.2013 -3.7208 -6.1420 16 6 4.0883 -2.4730 -6.1715 17 6 5.0378 -2.5577 -7.3387 18 6 5.0278 -1.5916 -8.3332 19 6 5.9130 -1.7026 -9.3888 20 7 6.7558 -2.7144 -9.4588 21 6 6.7967 -3.6484 -8.5288 22 6 5.9417 -3.6037 -7.4439 23 6 4.8865 -2.3912 -4.8674 24 6 3.9182 -2.3689 -3.6825 25 6 1.2529 -2.4981 -2.5002 26 6 0.3723 -2.5796 -1.2516 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5575 0.8881 29 1 1.7003 -4.6060 -0.0018 30 1 2.8713 -3.6048 0.8890 31 1 3.8344 -4.4087 -1.2496 32 1 3.6708 -2.6365 -1.2492 33 1 1.7020 -4.6049 -2.5008 34 1 1.6460 -2.7751 -4.9893 35 1 1.6586 -4.5520 -4.8886 36 1 2.5989 -3.7606 -7.0495 37 1 3.8273 -4.6110 -6.0807 38 1 3.4645 -1.5850 -6.2731 39 1 4.3373 -0.7627 -8.2835 40 1 5.9112 -0.9545 -10.1677 41 1 7.5038 -4.4599 -8.6181 42 1 5.9770 -4.3740 -6.6877 43 1 5.5399 -3.2599 -4.7855 44 1 5.4873 -1.4818 -4.8649 45 1 3.2755 -1.4917 -3.7569 46 1 4.4839 -2.3268 -2.7518 47 1 1.7979 -1.5540 -2.4994 48 1 0.6272 -2.5551 -3.3908 49 1 -0.1727 -3.5236 -1.2523 50 1 -0.3357 -1.7509 -1.2515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:37 Heat of formation + Delta-G solvation = 0.365079 kcal Electronic energy + Delta-G solvation = -27098.597955 eV Core-core repulsion = 23702.557301 eV Total energy + Delta-G solvation = -3396.040654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44277 -40.57789 -38.45513 -35.75947 -34.06015 -32.23284 -31.99953 -31.95536 -31.10905 -29.47351 -26.84066 -25.65687 -24.43564 -24.29279 -23.34086 -22.79080 -21.74221 -20.70177 -19.83695 -17.82652 -17.71942 -17.15441 -16.91211 -16.62457 -16.38391 -15.81812 -15.61425 -15.16065 -15.02986 -14.97043 -14.77028 -14.60545 -14.31501 -14.22456 -14.02066 -13.57442 -13.14530 -13.11321 -12.88828 -12.80600 -12.64904 -12.55216 -12.43213 -12.26138 -12.00189 -11.90176 -11.76983 -11.48859 -11.39959 -11.36038 -10.88859 -10.69962 -10.50007 -10.35463 -10.33589 -10.30122 -10.03077 -9.04661 -8.03628 -6.13294 0.25717 0.34028 1.36682 1.39856 1.47630 2.43568 2.90964 3.03600 3.24586 3.52731 3.64921 3.72117 3.90560 4.07875 4.09951 4.19550 4.26162 4.28675 4.33727 4.36806 4.45001 4.48853 4.63544 4.69365 4.72146 4.76695 4.79602 4.81766 4.89062 4.91329 4.95579 4.98319 5.02260 5.02934 5.09143 5.14000 5.20064 5.21680 5.27540 5.35974 5.44636 5.55507 5.57749 5.65197 5.69730 5.74093 5.83862 5.94720 6.23466 6.27045 6.33266 6.46948 6.97084 7.07552 7.52407 9.00923 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.003400 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.637084 B = 8234.139483 C = 9036.506069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.935 3.065 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.053 0.947 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.091 4.091 12 C 0.099 3.901 13 N -0.524 5.524 14 C 0.051 3.949 15 C -0.094 4.094 16 C -0.048 4.048 17 C -0.031 4.031 18 C -0.179 4.179 19 C 0.088 3.912 20 N -0.518 5.518 21 C 0.089 3.911 22 C -0.167 4.167 23 C -0.096 4.096 24 C 0.051 3.949 25 C -0.116 4.116 26 C -0.100 4.100 27 H 0.256 0.744 28 H -0.014 1.014 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.016 0.984 46 H 0.073 0.927 47 H 0.044 0.956 48 H 0.039 0.961 49 H 0.025 0.975 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 -7.714 -16.147 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.019 3.981 10 C -0.140 4.140 11 C -0.129 4.129 12 C -0.009 4.009 13 N -0.247 5.247 14 C -0.077 4.077 15 C -0.132 4.132 16 C -0.066 4.066 17 C -0.039 4.039 18 C -0.198 4.198 19 C -0.068 4.068 20 N -0.228 5.228 21 C -0.067 4.067 22 C -0.186 4.186 23 C -0.134 4.134 24 C -0.077 4.077 25 C -0.155 4.155 26 C -0.139 4.139 27 H 0.065 0.935 28 H 0.004 0.996 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.190 0.810 41 H 0.191 0.809 42 H 0.167 0.833 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.034 0.966 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.044 0.956 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.528 -8.059 -16.864 21.451 hybrid contribution -1.314 2.180 1.166 2.800 sum 9.214 -5.879 -15.697 19.128 Atomic orbital electron populations 1.70021 1.07047 1.26484 1.52487 1.25592 0.95384 1.01682 0.95689 0.85897 0.79095 0.80761 0.78023 1.20494 1.21503 1.19228 1.21389 0.92648 0.91415 1.48402 0.92900 1.18695 0.93211 0.93231 0.92931 1.21455 0.97731 0.97527 0.97243 1.21408 0.97281 1.01192 0.93010 1.21569 0.92466 0.97136 0.89717 1.62310 1.23371 1.37293 1.01693 1.22129 0.95085 1.00690 0.89794 1.21562 0.97528 0.97417 0.96694 1.20227 0.95020 0.99594 0.91785 1.20373 0.94934 0.93764 0.94850 1.22306 1.01426 1.00597 0.95492 1.23088 0.90838 0.95497 0.97366 1.67694 1.22724 1.03495 1.28899 1.23137 0.97291 0.96803 0.89517 1.22203 0.96593 0.99625 1.00204 1.21577 0.97190 1.02685 0.91962 1.22113 0.95619 0.90697 0.99313 1.21815 0.97816 0.99294 0.96550 1.21312 0.98367 0.98352 0.95851 0.93526 0.99562 0.93107 0.93547 0.91484 0.92669 0.90465 0.95860 0.90160 0.90683 0.90149 0.90942 0.83749 0.81044 0.80856 0.83347 0.90112 0.91550 0.96574 0.90834 0.93715 0.94215 0.95593 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 2 C 0.01 0.77 5.30 84.65 0.45 1.22 16 3 Si 0.94 43.23 29.54 68.60 2.03 45.25 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.50 -26.33 6.61 25.60 0.17 -26.16 16 8 H 0.05 2.75 6.71 -2.91 -0.02 2.73 16 9 C 0.04 1.84 2.59 -11.54 -0.03 1.81 16 10 C -0.10 -4.00 5.41 30.59 0.17 -3.84 16 11 C -0.09 -3.20 4.62 30.60 0.14 -3.06 16 12 C 0.10 3.30 2.29 44.91 0.10 3.40 16 13 N -0.52 -14.70 4.68 -871.14 -4.08 -18.78 16 14 C 0.05 1.25 4.89 86.33 0.42 1.67 16 15 C -0.09 -1.82 5.23 30.65 0.16 -1.66 16 16 C -0.05 -0.95 2.46 -11.46 -0.03 -0.97 16 17 C -0.03 -0.58 4.80 -19.67 -0.09 -0.67 16 18 C -0.18 -3.16 9.77 22.36 0.22 -2.94 16 19 C 0.09 1.60 11.18 84.68 0.95 2.54 16 20 N -0.52 -10.84 10.36 -195.84 -2.03 -12.86 16 21 C 0.09 1.56 11.18 84.68 0.95 2.50 16 22 C -0.17 -2.83 8.79 22.36 0.20 -2.63 16 23 C -0.10 -2.13 5.24 30.65 0.16 -1.97 16 24 C 0.05 1.45 4.67 86.32 0.40 1.86 16 25 C -0.12 -4.63 4.30 30.59 0.13 -4.50 16 26 C -0.10 -4.64 5.24 30.59 0.16 -4.48 16 27 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 28 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.13 4.69 -2.39 -0.01 2.12 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.02 0.64 6.63 -2.38 -0.02 0.63 16 35 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.45 7.40 -2.39 -0.02 1.44 16 38 H 0.07 1.54 7.95 -2.39 -0.02 1.52 16 39 H 0.14 2.11 8.01 -2.91 -0.02 2.09 16 40 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.15 2.08 7.24 -2.91 -0.02 2.06 16 43 H 0.08 1.65 7.40 -2.38 -0.02 1.64 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.02 0.54 6.71 -2.39 -0.02 0.52 16 46 H 0.07 2.27 5.90 -2.39 -0.01 2.26 16 47 H 0.04 2.03 5.71 -2.38 -0.01 2.02 16 48 H 0.04 1.49 6.54 -2.39 -0.02 1.48 16 49 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.05 2.84 6.07 -2.39 -0.01 2.83 16 Total: -1.00 -60.54 366.44 1.69 -58.85 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.91 Total: 18.06 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 4.62 Total: -37.87 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -5.86 Total: -84.29 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -60.54 1.69 -58.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.211 kcal (2) G-P(sol) polarization free energy of solvation -60.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds