Wall clock time and date at job start Tue Mar 31 2020 11:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99863 * 2 1 4 4 H 1.48498 * 109.47209 * 274.98839 * 3 2 1 5 5 H 1.48503 * 109.47204 * 34.99656 * 3 2 1 6 6 H 1.48510 * 109.47068 * 154.99134 * 3 2 1 7 7 C 1.37875 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00193 * 189.54727 * 7 2 1 9 9 C 1.50701 * 120.00278 * 9.54164 * 7 2 1 10 10 C 1.52998 * 109.47354 * 185.42496 * 9 7 2 11 11 C 1.53004 * 109.47297 * 300.00707 * 10 9 7 12 12 C 1.52997 * 109.46730 * 299.99561 * 11 10 9 13 13 N 1.46906 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.46848 * 110.99787 * 174.99922 * 13 12 11 15 15 C 1.53041 * 109.51300 * 174.15868 * 14 13 12 16 16 C 1.53119 * 109.28136 * 59.18239 * 15 14 13 17 17 C 1.50689 * 109.52475 * 182.44223 * 16 15 14 18 18 C 1.38675 * 120.42058 * 239.72504 * 17 16 15 19 19 C 1.38623 * 118.42498 * 179.78505 * 18 17 16 20 20 C 1.38227 * 119.15737 * 0.50859 * 19 18 17 21 21 N 1.31856 * 120.76759 * 359.72637 * 20 19 18 22 22 C 1.31887 * 121.72153 * 0.02562 * 21 20 19 23 23 C 1.53121 * 109.15995 * 302.35112 * 16 15 14 24 24 C 1.46849 * 110.99004 * 50.79902 * 13 12 11 25 25 C 1.53000 * 109.47212 * 60.00330 * 12 11 10 26 26 C 1.52999 * 109.47129 * 299.99821 * 25 12 11 27 27 H 0.97002 * 120.00161 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47459 * 305.43401 * 9 7 2 29 29 H 1.08999 * 109.47573 * 179.97438 * 10 9 7 30 30 H 1.09007 * 109.46936 * 60.00532 * 10 9 7 31 31 H 1.09002 * 109.46786 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47380 * 59.99938 * 11 10 9 33 33 H 1.09000 * 109.47337 * 299.99787 * 12 11 10 34 34 H 1.09001 * 109.45982 * 54.14985 * 14 13 12 35 35 H 1.09004 * 109.46342 * 294.16553 * 14 13 12 36 36 H 1.08996 * 109.50467 * 179.12820 * 15 14 13 37 37 H 1.09004 * 109.49796 * 299.20432 * 15 14 13 38 38 H 1.09003 * 109.51694 * 62.24823 * 16 15 14 39 39 H 1.08004 * 120.79061 * 0.02562 * 18 17 16 40 40 H 1.07993 * 120.42484 * 180.22059 * 19 18 17 41 41 H 1.08001 * 119.61780 * 179.75012 * 20 19 18 42 42 H 1.08002 * 119.61428 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.50099 * 177.59544 * 23 16 15 44 44 H 1.08997 * 109.49919 * 297.70957 * 23 16 15 45 45 H 1.09001 * 109.47450 * 65.83009 * 24 13 12 46 46 H 1.08999 * 109.45636 * 305.85466 * 24 13 12 47 47 H 1.08997 * 109.46910 * 59.99615 * 25 12 11 48 48 H 1.08995 * 109.46842 * 179.97438 * 25 12 11 49 49 H 1.09000 * 109.46714 * 300.00111 * 26 25 12 50 50 H 1.08990 * 109.47089 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5033 2.6199 0.8030 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2007 0.1546 9 6 1.2666 -2.4901 -0.2174 10 6 2.2324 -3.6630 -0.0377 11 6 3.3701 -3.5475 -1.0542 12 6 2.7928 -3.5747 -2.4708 13 7 3.8852 -3.4643 -3.4469 14 6 3.3813 -3.6059 -4.8189 15 6 4.5167 -3.3415 -5.8103 16 6 5.6509 -4.3387 -5.5578 17 6 6.7968 -4.0451 -6.4913 18 6 7.2352 -5.0067 -7.3892 19 6 8.2896 -4.6909 -8.2318 20 6 8.8719 -3.4405 -8.1424 21 7 8.4320 -2.5522 -7.2729 22 6 7.4281 -2.8163 -6.4593 23 6 6.1246 -4.2044 -4.1079 24 6 4.9426 -4.4438 -3.1659 25 6 1.8271 -2.4017 -2.6507 26 6 0.6894 -2.5172 -1.6342 27 1 -0.4850 0.8400 0.0004 28 1 0.4561 -2.5724 0.5067 29 1 1.6986 -4.6005 -0.1941 30 1 2.6436 -3.6437 0.9717 31 1 4.0583 -4.3829 -0.9257 32 1 3.9038 -2.6101 -0.8972 33 1 2.2592 -4.5121 -2.6278 34 1 2.5782 -2.8883 -4.9866 35 1 3.0009 -4.6171 -4.9636 36 1 4.1463 -3.4618 -6.8284 37 1 4.8880 -2.3255 -5.6758 38 1 5.2896 -5.3525 -5.7305 39 1 6.7637 -5.9774 -7.4336 40 1 8.6546 -5.4142 -8.9459 41 1 9.6965 -3.1879 -8.7925 42 1 7.0956 -2.0635 -5.7599 43 1 6.9031 -4.9412 -3.9097 44 1 6.5217 -3.2023 -3.9462 45 1 4.5548 -5.4510 -3.3184 46 1 5.2735 -4.3347 -2.1331 47 1 2.3608 -1.4644 -2.4937 48 1 1.4162 -2.4209 -3.6601 49 1 0.1558 -3.4546 -1.7911 50 1 0.0013 -1.6819 -1.7626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173336943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:02 Heat of formation + Delta-G solvation = 14.519928 kcal Electronic energy + Delta-G solvation = -26788.652424 eV Core-core repulsion = 23393.225570 eV Total energy + Delta-G solvation = -3395.426854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64163 -39.23796 -37.13321 -34.38572 -32.51874 -32.02048 -31.12251 -30.43887 -29.44403 -27.95653 -25.08978 -24.26779 -23.80500 -23.39155 -22.06265 -20.91966 -20.34581 -19.54407 -18.64766 -17.38541 -16.44246 -16.22552 -15.68014 -15.13489 -14.70972 -14.63551 -14.26842 -14.25345 -13.91373 -13.72483 -13.39228 -13.28225 -13.19387 -12.99549 -12.60571 -12.44926 -12.25360 -11.76746 -11.46387 -11.34839 -11.19996 -11.00235 -10.92886 -10.78051 -10.56581 -10.51201 -10.31485 -10.12834 -10.05011 -9.95726 -9.64603 -9.59027 -9.13754 -9.08584 -8.73250 -8.60951 -8.20126 -7.91897 -5.93778 -3.92423 0.89878 1.06438 3.36484 3.43994 3.47226 3.59884 4.13655 4.22677 4.49825 4.52139 4.53087 4.70551 4.80135 4.86522 4.94660 5.13331 5.25343 5.34978 5.39414 5.42533 5.56516 5.57108 5.59202 5.63515 5.71654 5.73674 5.86262 5.87931 6.02152 6.03246 6.07168 6.11644 6.12613 6.29774 6.38177 6.47453 6.50075 6.53612 6.56192 6.68873 6.73257 6.85184 7.10998 7.20215 7.40873 7.47940 7.51922 7.67450 7.78457 7.81246 7.97569 8.10475 8.55046 9.10003 9.69542 11.15860 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003102 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.360660 B = 9023.206961 C = 9761.967552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.880 3.120 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.106 4.106 11 C -0.102 4.102 12 C 0.096 3.904 13 N -0.531 5.531 14 C 0.055 3.945 15 C -0.107 4.107 16 C -0.045 4.045 17 C -0.120 4.120 18 C -0.077 4.077 19 C -0.173 4.173 20 C 0.087 3.913 21 N -0.483 5.483 22 C 0.106 3.894 23 C -0.107 4.107 24 C 0.052 3.948 25 C -0.092 4.092 26 C -0.101 4.101 27 H 0.258 0.742 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.024 0.976 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.031 0.969 49 H 0.015 0.985 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 -11.740 -14.728 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.708 3.292 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.011 4.011 13 N -0.256 5.256 14 C -0.074 4.074 15 C -0.144 4.144 16 C -0.064 4.064 17 C -0.122 4.122 18 C -0.103 4.103 19 C -0.193 4.193 20 C -0.070 4.070 21 N -0.191 5.191 22 C -0.051 4.051 23 C -0.145 4.145 24 C -0.076 4.076 25 C -0.130 4.130 26 C -0.139 4.139 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.050 0.950 49 H 0.034 0.966 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.035 -10.327 -14.645 22.159 hybrid contribution -0.323 -0.782 -0.296 0.896 sum 12.712 -11.109 -14.940 22.544 Atomic orbital electron populations 1.69964 1.05914 1.26225 1.50989 1.24920 0.94646 0.98805 0.95409 0.86765 0.80137 0.84281 0.77973 1.20747 1.21603 1.19935 1.21123 0.93894 0.90691 1.48023 0.92557 1.18695 0.93932 0.92196 0.92791 1.21552 0.97008 0.98506 0.97333 1.21586 0.97878 1.01318 0.93207 1.21637 0.90504 0.97454 0.91502 1.61978 1.11838 1.49825 1.01956 1.22088 0.96906 0.99664 0.88694 1.21664 0.94855 0.99615 0.98308 1.20208 0.92475 1.00014 0.93716 1.20956 0.98338 0.95160 0.97707 1.21530 0.95608 0.99165 0.94020 1.22119 0.97856 0.98596 1.00723 1.22752 0.98616 0.89847 0.95811 1.67726 1.12205 1.34531 1.04672 1.22737 0.91096 0.95345 0.95931 1.21674 0.97453 1.02719 0.92619 1.22145 0.92335 0.93117 1.00049 1.21447 0.96287 0.98429 0.96851 1.21446 0.96576 0.98757 0.97165 0.93261 0.95183 0.95118 0.93316 0.94423 0.90230 0.95781 0.89969 0.95592 0.91856 0.90652 0.90718 0.85091 0.85013 0.83039 0.82563 0.91880 0.90671 0.95630 0.89710 0.90189 0.94993 0.96628 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 12.16 55.43 0.67 -24.79 16 2 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 3 Si 0.88 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.50 -13.17 6.63 -34.44 -0.23 -13.40 16 8 H 0.06 1.49 6.54 -52.48 -0.34 1.15 16 9 C 0.04 1.02 2.45 -91.77 -0.22 0.80 16 10 C -0.11 -2.15 5.42 -26.73 -0.14 -2.30 16 11 C -0.10 -1.88 4.44 -26.73 -0.12 -2.00 16 12 C 0.10 1.69 1.96 -67.71 -0.13 1.55 16 13 N -0.53 -7.99 4.52 -226.68 -1.03 -9.02 16 14 C 0.05 0.72 5.29 -3.83 -0.02 0.70 16 15 C -0.11 -1.18 5.23 -26.65 -0.14 -1.32 16 16 C -0.04 -0.45 2.44 -91.65 -0.22 -0.67 16 17 C -0.12 -1.19 4.80 -104.49 -0.50 -1.69 16 18 C -0.08 -0.66 9.81 -39.28 -0.39 -1.05 16 19 C -0.17 -1.38 10.11 -39.44 -0.40 -1.77 16 20 C 0.09 0.80 11.18 -17.55 -0.20 0.61 16 21 N -0.48 -5.71 10.36 -13.25 -0.14 -5.85 16 22 C 0.11 1.18 9.85 -17.55 -0.17 1.01 16 23 C -0.11 -1.16 5.23 -26.65 -0.14 -1.30 16 24 C 0.05 0.66 5.01 -3.83 -0.02 0.64 16 25 C -0.09 -1.86 4.90 -26.73 -0.13 -1.99 16 26 C -0.10 -2.29 5.29 -26.73 -0.14 -2.43 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.60 6.19 -51.93 -0.32 0.28 16 32 H 0.08 1.63 6.52 -51.93 -0.34 1.29 16 33 H 0.02 0.43 8.13 -51.93 -0.42 0.00 16 34 H 0.08 1.16 6.18 -51.93 -0.32 0.84 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.89 7.35 -51.93 -0.38 0.51 16 38 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 39 H 0.13 0.87 8.01 -52.48 -0.42 0.45 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.16 1.68 7.08 -52.49 -0.37 1.31 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.87 7.32 -51.93 -0.38 0.49 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 1.14 5.83 -51.93 -0.30 0.83 16 47 H 0.08 1.83 7.22 -51.93 -0.37 1.45 16 48 H 0.03 0.59 6.40 -51.93 -0.33 0.26 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -28.73 370.26 -11.78 -40.51 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.44 Total: 0.26 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -3.41 Total: -22.97 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.49 Total: -39.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.73 -11.78 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.031 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds