Wall clock time and date at job start Tue Mar 31 2020 11:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99863 * 2 1 4 4 H 1.48498 * 109.47209 * 274.98839 * 3 2 1 5 5 H 1.48503 * 109.47204 * 34.99656 * 3 2 1 6 6 H 1.48510 * 109.47068 * 154.99134 * 3 2 1 7 7 C 1.37875 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00193 * 189.54727 * 7 2 1 9 9 C 1.50701 * 120.00278 * 9.54164 * 7 2 1 10 10 C 1.52998 * 109.47354 * 185.42496 * 9 7 2 11 11 C 1.53004 * 109.47297 * 300.00707 * 10 9 7 12 12 C 1.52997 * 109.46730 * 299.99561 * 11 10 9 13 13 N 1.46906 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.46848 * 110.99787 * 174.99922 * 13 12 11 15 15 C 1.53041 * 109.51300 * 174.15868 * 14 13 12 16 16 C 1.53119 * 109.28136 * 59.18239 * 15 14 13 17 17 C 1.50689 * 109.52475 * 182.44223 * 16 15 14 18 18 C 1.38675 * 120.42058 * 239.72504 * 17 16 15 19 19 C 1.38623 * 118.42498 * 179.78505 * 18 17 16 20 20 C 1.38227 * 119.15737 * 0.50859 * 19 18 17 21 21 N 1.31856 * 120.76759 * 359.72637 * 20 19 18 22 22 C 1.31887 * 121.72153 * 0.02562 * 21 20 19 23 23 C 1.53121 * 109.15995 * 302.35112 * 16 15 14 24 24 C 1.46849 * 110.99004 * 50.79902 * 13 12 11 25 25 C 1.53000 * 109.47212 * 60.00330 * 12 11 10 26 26 C 1.52999 * 109.47129 * 299.99821 * 25 12 11 27 27 H 0.97002 * 120.00161 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47459 * 305.43401 * 9 7 2 29 29 H 1.08999 * 109.47573 * 179.97438 * 10 9 7 30 30 H 1.09007 * 109.46936 * 60.00532 * 10 9 7 31 31 H 1.09002 * 109.46786 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47380 * 59.99938 * 11 10 9 33 33 H 1.09000 * 109.47337 * 299.99787 * 12 11 10 34 34 H 1.09001 * 109.45982 * 54.14985 * 14 13 12 35 35 H 1.09004 * 109.46342 * 294.16553 * 14 13 12 36 36 H 1.08996 * 109.50467 * 179.12820 * 15 14 13 37 37 H 1.09004 * 109.49796 * 299.20432 * 15 14 13 38 38 H 1.09003 * 109.51694 * 62.24823 * 16 15 14 39 39 H 1.08004 * 120.79061 * 0.02562 * 18 17 16 40 40 H 1.07993 * 120.42484 * 180.22059 * 19 18 17 41 41 H 1.08001 * 119.61780 * 179.75012 * 20 19 18 42 42 H 1.08002 * 119.61428 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.50099 * 177.59544 * 23 16 15 44 44 H 1.08997 * 109.49919 * 297.70957 * 23 16 15 45 45 H 1.09001 * 109.47450 * 65.83009 * 24 13 12 46 46 H 1.08999 * 109.45636 * 305.85466 * 24 13 12 47 47 H 1.08997 * 109.46910 * 59.99615 * 25 12 11 48 48 H 1.08995 * 109.46842 * 179.97438 * 25 12 11 49 49 H 1.09000 * 109.46714 * 300.00111 * 26 25 12 50 50 H 1.08990 * 109.47089 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5033 2.6199 0.8030 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2007 0.1546 9 6 1.2666 -2.4901 -0.2174 10 6 2.2324 -3.6630 -0.0377 11 6 3.3701 -3.5475 -1.0542 12 6 2.7928 -3.5747 -2.4708 13 7 3.8852 -3.4643 -3.4469 14 6 3.3813 -3.6059 -4.8189 15 6 4.5167 -3.3415 -5.8103 16 6 5.6509 -4.3387 -5.5578 17 6 6.7968 -4.0451 -6.4913 18 6 7.2352 -5.0067 -7.3892 19 6 8.2896 -4.6909 -8.2318 20 6 8.8719 -3.4405 -8.1424 21 7 8.4320 -2.5522 -7.2729 22 6 7.4281 -2.8163 -6.4593 23 6 6.1246 -4.2044 -4.1079 24 6 4.9426 -4.4438 -3.1659 25 6 1.8271 -2.4017 -2.6507 26 6 0.6894 -2.5172 -1.6342 27 1 -0.4850 0.8400 0.0004 28 1 0.4561 -2.5724 0.5067 29 1 1.6986 -4.6005 -0.1941 30 1 2.6436 -3.6437 0.9717 31 1 4.0583 -4.3829 -0.9257 32 1 3.9038 -2.6101 -0.8972 33 1 2.2592 -4.5121 -2.6278 34 1 2.5782 -2.8883 -4.9866 35 1 3.0009 -4.6171 -4.9636 36 1 4.1463 -3.4618 -6.8284 37 1 4.8880 -2.3255 -5.6758 38 1 5.2896 -5.3525 -5.7305 39 1 6.7637 -5.9774 -7.4336 40 1 8.6546 -5.4142 -8.9459 41 1 9.6965 -3.1879 -8.7925 42 1 7.0956 -2.0635 -5.7599 43 1 6.9031 -4.9412 -3.9097 44 1 6.5217 -3.2023 -3.9462 45 1 4.5548 -5.4510 -3.3184 46 1 5.2735 -4.3347 -2.1331 47 1 2.3608 -1.4644 -2.4937 48 1 1.4162 -2.4209 -3.6601 49 1 0.1558 -3.4546 -1.7911 50 1 0.0013 -1.6819 -1.7626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173336943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:01 Heat of formation + Delta-G solvation = -0.129990 kcal Electronic energy + Delta-G solvation = -26789.287692 eV Core-core repulsion = 23393.225570 eV Total energy + Delta-G solvation = -3396.062122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41579 -40.42810 -38.49777 -35.61785 -34.01858 -33.05623 -32.25817 -31.53537 -30.93055 -29.36232 -26.79595 -25.48638 -24.55979 -24.51437 -23.01466 -22.40220 -21.73771 -20.52840 -20.39360 -18.06876 -17.74910 -17.33385 -17.11860 -16.60055 -15.98296 -15.75502 -15.55849 -15.10978 -15.05950 -14.80631 -14.75187 -14.37104 -14.26922 -14.20851 -13.91747 -13.63515 -13.42075 -13.34103 -12.90713 -12.79687 -12.67451 -12.42101 -12.39253 -12.16110 -12.06576 -11.92689 -11.75645 -11.57837 -11.41929 -11.13455 -10.93902 -10.66836 -10.58130 -10.38852 -10.31644 -10.26648 -9.80180 -9.07816 -8.05850 -6.08843 0.21383 0.39819 1.40317 1.43685 1.51414 2.47688 2.89617 3.00558 3.26684 3.50812 3.75463 3.78859 3.90716 4.07730 4.12203 4.12738 4.17454 4.23411 4.35684 4.38898 4.47995 4.50178 4.61113 4.66926 4.71040 4.72544 4.78783 4.87458 4.90467 4.91904 4.93821 4.98000 4.99960 5.02291 5.08823 5.18595 5.22736 5.23649 5.26824 5.33433 5.40465 5.53598 5.57504 5.69418 5.73436 5.75861 5.84496 5.98903 6.13024 6.34738 6.39156 6.48971 7.01293 7.08411 7.55568 9.03691 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003102 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.360660 B = 9023.206961 C = 9761.967552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.935 3.065 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.053 0.947 9 C 0.037 3.963 10 C -0.101 4.101 11 C -0.094 4.094 12 C 0.107 3.893 13 N -0.544 5.544 14 C 0.055 3.945 15 C -0.100 4.100 16 C -0.035 4.035 17 C -0.124 4.124 18 C -0.078 4.078 19 C -0.166 4.166 20 C 0.074 3.926 21 N -0.517 5.517 22 C 0.086 3.914 23 C -0.101 4.101 24 C 0.052 3.948 25 C -0.082 4.082 26 C -0.095 4.095 27 H 0.256 0.744 28 H -0.008 1.008 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.147 0.853 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.046 0.954 49 H 0.031 0.969 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.485 -14.128 -16.629 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.018 3.982 10 C -0.139 4.139 11 C -0.132 4.132 12 C -0.001 4.001 13 N -0.269 5.269 14 C -0.073 4.073 15 C -0.138 4.138 16 C -0.054 4.054 17 C -0.126 4.126 18 C -0.104 4.104 19 C -0.185 4.185 20 C -0.083 4.083 21 N -0.226 5.226 22 C -0.070 4.070 23 C -0.139 4.139 24 C -0.075 4.075 25 C -0.120 4.120 26 C -0.134 4.134 27 H 0.065 0.935 28 H 0.010 0.990 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.050 0.950 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.965 -12.718 -16.544 25.679 hybrid contribution -0.900 -0.070 0.267 0.941 sum 14.065 -12.788 -16.277 25.026 Atomic orbital electron populations 1.70084 1.07172 1.26693 1.52447 1.25578 0.95295 1.01763 0.95611 0.85887 0.79189 0.80869 0.77833 1.20632 1.21521 1.19257 1.21389 0.93783 0.91797 1.46830 0.92869 1.18694 0.93603 0.93214 0.92670 1.21458 0.96946 0.97437 0.98063 1.21481 0.97274 1.01274 0.93156 1.21376 0.90767 0.96195 0.91787 1.61895 1.11439 1.51317 1.02294 1.22110 0.97341 0.99829 0.88027 1.21596 0.94613 0.99321 0.98297 1.20108 0.91975 1.00269 0.93049 1.20901 0.98321 0.95056 0.98283 1.21881 0.95549 0.99767 0.93214 1.22470 0.96998 0.98462 1.00605 1.23226 0.99224 0.90269 0.95533 1.67681 1.13016 1.36074 1.05815 1.22694 0.91831 0.96045 0.96421 1.21614 0.96933 1.02442 0.92895 1.22186 0.92111 0.93004 1.00248 1.21268 0.95755 0.98302 0.96706 1.21298 0.96964 0.97996 0.97100 0.93467 0.99007 0.93222 0.93528 0.91355 0.92706 0.94895 0.91433 0.94454 0.90585 0.92092 0.89132 0.82571 0.81830 0.80966 0.83611 0.90337 0.92037 0.94425 0.90373 0.93402 0.93525 0.95039 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 12.16 21.45 0.26 -54.36 16 2 C 0.02 0.85 5.20 84.65 0.44 1.29 16 3 Si 0.94 44.73 29.55 68.60 2.03 46.76 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.50 -27.06 6.63 25.60 0.17 -26.89 16 8 H 0.05 2.87 6.54 -2.91 -0.02 2.85 16 9 C 0.04 1.82 2.45 -11.54 -0.03 1.79 16 10 C -0.10 -4.04 5.42 30.60 0.17 -3.88 16 11 C -0.09 -3.34 4.44 30.59 0.14 -3.21 16 12 C 0.11 3.58 1.96 44.91 0.09 3.67 16 13 N -0.54 -15.54 4.52 -871.09 -3.94 -19.48 16 14 C 0.05 1.34 5.29 86.33 0.46 1.80 16 15 C -0.10 -2.05 5.23 30.65 0.16 -1.89 16 16 C -0.03 -0.60 2.44 -11.46 -0.03 -0.63 16 17 C -0.12 -2.18 4.80 -19.78 -0.09 -2.27 16 18 C -0.08 -1.07 9.81 22.47 0.22 -0.85 16 19 C -0.17 -2.06 10.11 22.36 0.23 -1.84 16 20 C 0.07 1.22 11.18 84.69 0.95 2.17 16 21 N -0.52 -11.85 10.36 -195.84 -2.03 -13.88 16 22 C 0.09 1.88 9.85 84.67 0.83 2.71 16 23 C -0.10 -1.97 5.23 30.65 0.16 -1.81 16 24 C 0.05 1.20 5.01 86.32 0.43 1.64 16 25 C -0.08 -3.33 4.90 30.59 0.15 -3.18 16 26 C -0.09 -4.40 5.29 30.60 0.16 -4.24 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H -0.01 -0.47 8.09 -2.39 -0.02 -0.49 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.85 8.14 -2.38 -0.02 1.84 16 31 H 0.07 2.02 6.19 -2.39 -0.01 2.01 16 32 H 0.05 2.23 6.52 -2.39 -0.02 2.21 16 33 H 0.03 1.07 8.13 -2.39 -0.02 1.05 16 34 H 0.07 1.84 6.18 -2.39 -0.01 1.82 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.42 7.35 -2.39 -0.02 1.40 16 38 H 0.09 1.32 7.94 -2.39 -0.02 1.30 16 39 H 0.16 1.31 8.01 -2.91 -0.02 1.29 16 40 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 41 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.15 3.26 7.08 -2.91 -0.02 3.24 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.38 7.32 -2.39 -0.02 1.36 16 45 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 1.91 5.83 -2.39 -0.01 1.89 16 47 H 0.05 2.23 7.22 -2.39 -0.02 2.21 16 48 H 0.05 1.72 6.40 -2.39 -0.02 1.70 16 49 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.04 1.96 6.91 -2.39 -0.02 1.95 16 Total: -1.00 -64.14 370.26 1.82 -62.32 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.90 Total: 14.24 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 4.60 Total: -35.60 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -5.71 Total: -87.72 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.14 1.82 -62.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.190 kcal (2) G-P(sol) polarization free energy of solvation -64.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds