Wall clock time and date at job start Tue Mar 31 2020 11:24:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86796 * 119.99863 * 2 1
4 4 H 1.48498 * 109.47209 * 274.98839 * 3 2 1
5 5 H 1.48503 * 109.47204 * 34.99656 * 3 2 1
6 6 H 1.48510 * 109.47068 * 154.99134 * 3 2 1
7 7 C 1.37875 * 119.99861 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00193 * 189.54727 * 7 2 1
9 9 C 1.50701 * 120.00278 * 9.54164 * 7 2 1
10 10 C 1.52998 * 109.47354 * 185.42496 * 9 7 2
11 11 C 1.53004 * 109.47297 * 300.00707 * 10 9 7
12 12 C 1.52997 * 109.46730 * 299.99561 * 11 10 9
13 13 N 1.46906 * 109.46840 * 180.02562 * 12 11 10
14 14 C 1.46848 * 110.99787 * 174.99922 * 13 12 11
15 15 C 1.53041 * 109.51300 * 174.15868 * 14 13 12
16 16 C 1.53119 * 109.28136 * 59.18239 * 15 14 13
17 17 C 1.50689 * 109.52475 * 182.44223 * 16 15 14
18 18 C 1.38675 * 120.42058 * 239.72504 * 17 16 15
19 19 C 1.38623 * 118.42498 * 179.78505 * 18 17 16
20 20 C 1.38227 * 119.15737 * 0.50859 * 19 18 17
21 21 N 1.31856 * 120.76759 * 359.72637 * 20 19 18
22 22 C 1.31887 * 121.72153 * 0.02562 * 21 20 19
23 23 C 1.53121 * 109.15995 * 302.35112 * 16 15 14
24 24 C 1.46849 * 110.99004 * 50.79902 * 13 12 11
25 25 C 1.53000 * 109.47212 * 60.00330 * 12 11 10
26 26 C 1.52999 * 109.47129 * 299.99821 * 25 12 11
27 27 H 0.97002 * 120.00161 * 359.97438 * 1 2 3
28 28 H 1.08996 * 109.47459 * 305.43401 * 9 7 2
29 29 H 1.08999 * 109.47573 * 179.97438 * 10 9 7
30 30 H 1.09007 * 109.46936 * 60.00532 * 10 9 7
31 31 H 1.09002 * 109.46786 * 179.97438 * 11 10 9
32 32 H 1.08997 * 109.47380 * 59.99938 * 11 10 9
33 33 H 1.09000 * 109.47337 * 299.99787 * 12 11 10
34 34 H 1.09001 * 109.45982 * 54.14985 * 14 13 12
35 35 H 1.09004 * 109.46342 * 294.16553 * 14 13 12
36 36 H 1.08996 * 109.50467 * 179.12820 * 15 14 13
37 37 H 1.09004 * 109.49796 * 299.20432 * 15 14 13
38 38 H 1.09003 * 109.51694 * 62.24823 * 16 15 14
39 39 H 1.08004 * 120.79061 * 0.02562 * 18 17 16
40 40 H 1.07993 * 120.42484 * 180.22059 * 19 18 17
41 41 H 1.08001 * 119.61780 * 179.75012 * 20 19 18
42 42 H 1.08002 * 119.61428 * 179.97438 * 22 21 20
43 43 H 1.09001 * 109.50099 * 177.59544 * 23 16 15
44 44 H 1.08997 * 109.49919 * 297.70957 * 23 16 15
45 45 H 1.09001 * 109.47450 * 65.83009 * 24 13 12
46 46 H 1.08999 * 109.45636 * 305.85466 * 24 13 12
47 47 H 1.08997 * 109.46910 * 59.99615 * 25 12 11
48 48 H 1.08995 * 109.46842 * 179.97438 * 25 12 11
49 49 H 1.09000 * 109.46714 * 300.00111 * 26 25 12
50 50 H 1.08990 * 109.47089 * 180.02562 * 26 25 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.3911 2.1073 -1.3947
5 1 1.5033 2.6199 0.8030
6 1 3.5955 1.4120 0.5919
7 6 2.0045 -1.1940 -0.0005
8 1 3.0733 -1.2007 0.1546
9 6 1.2666 -2.4901 -0.2174
10 6 2.2324 -3.6630 -0.0377
11 6 3.3701 -3.5475 -1.0542
12 6 2.7928 -3.5747 -2.4708
13 7 3.8852 -3.4643 -3.4469
14 6 3.3813 -3.6059 -4.8189
15 6 4.5167 -3.3415 -5.8103
16 6 5.6509 -4.3387 -5.5578
17 6 6.7968 -4.0451 -6.4913
18 6 7.2352 -5.0067 -7.3892
19 6 8.2896 -4.6909 -8.2318
20 6 8.8719 -3.4405 -8.1424
21 7 8.4320 -2.5522 -7.2729
22 6 7.4281 -2.8163 -6.4593
23 6 6.1246 -4.2044 -4.1079
24 6 4.9426 -4.4438 -3.1659
25 6 1.8271 -2.4017 -2.6507
26 6 0.6894 -2.5172 -1.6342
27 1 -0.4850 0.8400 0.0004
28 1 0.4561 -2.5724 0.5067
29 1 1.6986 -4.6005 -0.1941
30 1 2.6436 -3.6437 0.9717
31 1 4.0583 -4.3829 -0.9257
32 1 3.9038 -2.6101 -0.8972
33 1 2.2592 -4.5121 -2.6278
34 1 2.5782 -2.8883 -4.9866
35 1 3.0009 -4.6171 -4.9636
36 1 4.1463 -3.4618 -6.8284
37 1 4.8880 -2.3255 -5.6758
38 1 5.2896 -5.3525 -5.7305
39 1 6.7637 -5.9774 -7.4336
40 1 8.6546 -5.4142 -8.9459
41 1 9.6965 -3.1879 -8.7925
42 1 7.0956 -2.0635 -5.7599
43 1 6.9031 -4.9412 -3.9097
44 1 6.5217 -3.2023 -3.9462
45 1 4.5548 -5.4510 -3.3184
46 1 5.2735 -4.3347 -2.1331
47 1 2.3608 -1.4644 -2.4937
48 1 1.4162 -2.4209 -3.6601
49 1 0.1558 -3.4546 -1.7911
50 1 0.0013 -1.6819 -1.7626
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001173336943.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:24:01
Heat of formation + Delta-G solvation = -0.129990 kcal
Electronic energy + Delta-G solvation = -26789.287692 eV
Core-core repulsion = 23393.225570 eV
Total energy + Delta-G solvation = -3396.062122 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.41579 -40.42810 -38.49777 -35.61785 -34.01858 -33.05623 -32.25817 -31.53537
-30.93055 -29.36232 -26.79595 -25.48638 -24.55979 -24.51437 -23.01466 -22.40220
-21.73771 -20.52840 -20.39360 -18.06876 -17.74910 -17.33385 -17.11860 -16.60055
-15.98296 -15.75502 -15.55849 -15.10978 -15.05950 -14.80631 -14.75187 -14.37104
-14.26922 -14.20851 -13.91747 -13.63515 -13.42075 -13.34103 -12.90713 -12.79687
-12.67451 -12.42101 -12.39253 -12.16110 -12.06576 -11.92689 -11.75645 -11.57837
-11.41929 -11.13455 -10.93902 -10.66836 -10.58130 -10.38852 -10.31644 -10.26648
-9.80180 -9.07816 -8.05850 -6.08843 0.21383 0.39819 1.40317 1.43685
1.51414 2.47688 2.89617 3.00558 3.26684 3.50812 3.75463 3.78859
3.90716 4.07730 4.12203 4.12738 4.17454 4.23411 4.35684 4.38898
4.47995 4.50178 4.61113 4.66926 4.71040 4.72544 4.78783 4.87458
4.90467 4.91904 4.93821 4.98000 4.99960 5.02291 5.08823 5.18595
5.22736 5.23649 5.26824 5.33433 5.40465 5.53598 5.57504 5.69418
5.73436 5.75861 5.84496 5.98903 6.13024 6.34738 6.39156 6.48971
7.01293 7.08411 7.55568 9.03691
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.019103 B = 0.003102 C = 0.002868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1465.360660 B = 9023.206961 C = 9761.967552
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.015 3.985
3 Si 0.935 3.065
4 H -0.280 1.280
5 H -0.289 1.289
6 H -0.268 1.268
7 C -0.500 4.500
8 H 0.053 0.947
9 C 0.037 3.963
10 C -0.101 4.101
11 C -0.094 4.094
12 C 0.107 3.893
13 N -0.544 5.544
14 C 0.055 3.945
15 C -0.100 4.100
16 C -0.035 4.035
17 C -0.124 4.124
18 C -0.078 4.078
19 C -0.166 4.166
20 C 0.074 3.926
21 N -0.517 5.517
22 C 0.086 3.914
23 C -0.101 4.101
24 C 0.052 3.948
25 C -0.082 4.082
26 C -0.095 4.095
27 H 0.256 0.744
28 H -0.008 1.008
29 H 0.049 0.951
30 H 0.046 0.954
31 H 0.068 0.932
32 H 0.054 0.946
33 H 0.033 0.967
34 H 0.067 0.933
35 H 0.037 0.963
36 H 0.076 0.924
37 H 0.060 0.940
38 H 0.090 0.910
39 H 0.157 0.843
40 H 0.164 0.836
41 H 0.173 0.827
42 H 0.147 0.853
43 H 0.078 0.922
44 H 0.061 0.939
45 H 0.038 0.962
46 H 0.078 0.922
47 H 0.047 0.953
48 H 0.046 0.954
49 H 0.031 0.969
50 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.485 -14.128 -16.629 26.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.182 4.182
3 Si 0.762 3.238
4 H -0.206 1.206
5 H -0.215 1.215
6 H -0.193 1.193
7 C -0.538 4.538
8 H 0.071 0.929
9 C 0.018 3.982
10 C -0.139 4.139
11 C -0.132 4.132
12 C -0.001 4.001
13 N -0.269 5.269
14 C -0.073 4.073
15 C -0.138 4.138
16 C -0.054 4.054
17 C -0.126 4.126
18 C -0.104 4.104
19 C -0.185 4.185
20 C -0.083 4.083
21 N -0.226 5.226
22 C -0.070 4.070
23 C -0.139 4.139
24 C -0.075 4.075
25 C -0.120 4.120
26 C -0.134 4.134
27 H 0.065 0.935
28 H 0.010 0.990
29 H 0.068 0.932
30 H 0.065 0.935
31 H 0.086 0.914
32 H 0.073 0.927
33 H 0.051 0.949
34 H 0.086 0.914
35 H 0.055 0.945
36 H 0.094 0.906
37 H 0.079 0.921
38 H 0.109 0.891
39 H 0.174 0.826
40 H 0.182 0.818
41 H 0.190 0.810
42 H 0.164 0.836
43 H 0.097 0.903
44 H 0.080 0.920
45 H 0.056 0.944
46 H 0.096 0.904
47 H 0.066 0.934
48 H 0.065 0.935
49 H 0.050 0.950
50 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 14.965 -12.718 -16.544 25.679
hybrid contribution -0.900 -0.070 0.267 0.941
sum 14.065 -12.788 -16.277 25.026
Atomic orbital electron populations
1.70084 1.07172 1.26693 1.52447 1.25578 0.95295 1.01763 0.95611
0.85887 0.79189 0.80869 0.77833 1.20632 1.21521 1.19257 1.21389
0.93783 0.91797 1.46830 0.92869 1.18694 0.93603 0.93214 0.92670
1.21458 0.96946 0.97437 0.98063 1.21481 0.97274 1.01274 0.93156
1.21376 0.90767 0.96195 0.91787 1.61895 1.11439 1.51317 1.02294
1.22110 0.97341 0.99829 0.88027 1.21596 0.94613 0.99321 0.98297
1.20108 0.91975 1.00269 0.93049 1.20901 0.98321 0.95056 0.98283
1.21881 0.95549 0.99767 0.93214 1.22470 0.96998 0.98462 1.00605
1.23226 0.99224 0.90269 0.95533 1.67681 1.13016 1.36074 1.05815
1.22694 0.91831 0.96045 0.96421 1.21614 0.96933 1.02442 0.92895
1.22186 0.92111 0.93004 1.00248 1.21268 0.95755 0.98302 0.96706
1.21298 0.96964 0.97996 0.97100 0.93467 0.99007 0.93222 0.93528
0.91355 0.92706 0.94895 0.91433 0.94454 0.90585 0.92092 0.89132
0.82571 0.81830 0.80966 0.83611 0.90337 0.92037 0.94425 0.90373
0.93402 0.93525 0.95039 0.94475
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.62 12.16 21.45 0.26 -54.36 16
2 C 0.02 0.85 5.20 84.65 0.44 1.29 16
3 Si 0.94 44.73 29.55 68.60 2.03 46.76 16
4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16
6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16
7 C -0.50 -27.06 6.63 25.60 0.17 -26.89 16
8 H 0.05 2.87 6.54 -2.91 -0.02 2.85 16
9 C 0.04 1.82 2.45 -11.54 -0.03 1.79 16
10 C -0.10 -4.04 5.42 30.60 0.17 -3.88 16
11 C -0.09 -3.34 4.44 30.59 0.14 -3.21 16
12 C 0.11 3.58 1.96 44.91 0.09 3.67 16
13 N -0.54 -15.54 4.52 -871.09 -3.94 -19.48 16
14 C 0.05 1.34 5.29 86.33 0.46 1.80 16
15 C -0.10 -2.05 5.23 30.65 0.16 -1.89 16
16 C -0.03 -0.60 2.44 -11.46 -0.03 -0.63 16
17 C -0.12 -2.18 4.80 -19.78 -0.09 -2.27 16
18 C -0.08 -1.07 9.81 22.47 0.22 -0.85 16
19 C -0.17 -2.06 10.11 22.36 0.23 -1.84 16
20 C 0.07 1.22 11.18 84.69 0.95 2.17 16
21 N -0.52 -11.85 10.36 -195.84 -2.03 -13.88 16
22 C 0.09 1.88 9.85 84.67 0.83 2.71 16
23 C -0.10 -1.97 5.23 30.65 0.16 -1.81 16
24 C 0.05 1.20 5.01 86.32 0.43 1.64 16
25 C -0.08 -3.33 4.90 30.59 0.15 -3.18 16
26 C -0.09 -4.40 5.29 30.60 0.16 -4.24 16
27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16
28 H -0.01 -0.47 8.09 -2.39 -0.02 -0.49 16
29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
30 H 0.05 1.85 8.14 -2.38 -0.02 1.84 16
31 H 0.07 2.02 6.19 -2.39 -0.01 2.01 16
32 H 0.05 2.23 6.52 -2.39 -0.02 2.21 16
33 H 0.03 1.07 8.13 -2.39 -0.02 1.05 16
34 H 0.07 1.84 6.18 -2.39 -0.01 1.82 16
35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
37 H 0.06 1.42 7.35 -2.39 -0.02 1.40 16
38 H 0.09 1.32 7.94 -2.39 -0.02 1.30 16
39 H 0.16 1.31 8.01 -2.91 -0.02 1.29 16
40 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16
41 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16
42 H 0.15 3.26 7.08 -2.91 -0.02 3.24 16
43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
44 H 0.06 1.38 7.32 -2.39 -0.02 1.36 16
45 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16
46 H 0.08 1.91 5.83 -2.39 -0.01 1.89 16
47 H 0.05 2.23 7.22 -2.39 -0.02 2.21 16
48 H 0.05 1.72 6.40 -2.39 -0.02 1.70 16
49 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16
50 H 0.04 1.96 6.91 -2.39 -0.02 1.95 16
Total: -1.00 -64.14 370.26 1.82 -62.32
By element:
Atomic # 1 Polarization: 13.34 SS G_CDS: 0.90 Total: 14.24 kcal
Atomic # 6 Polarization: -40.20 SS G_CDS: 4.60 Total: -35.60 kcal
Atomic # 7 Polarization: -82.01 SS G_CDS: -5.71 Total: -87.72 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -64.14 1.82 -62.32 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173336943.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.190 kcal
(2) G-P(sol) polarization free energy of solvation -64.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.130 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds