Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47248 * 274.99103 * 3 2 1 5 5 H 1.48500 * 109.47341 * 34.99138 * 3 2 1 6 6 H 1.48505 * 109.47118 * 154.98936 * 3 2 1 7 7 C 1.37879 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00129 * 189.54499 * 7 2 1 9 9 C 1.50703 * 119.99877 * 9.55020 * 7 2 1 10 10 C 1.52997 * 109.46983 * 185.42598 * 9 7 2 11 11 C 1.52998 * 109.47180 * 299.99599 * 10 9 7 12 12 C 1.53002 * 109.47318 * 300.00496 * 11 10 9 13 13 N 1.46904 * 109.47315 * 179.97438 * 12 11 10 14 14 C 1.46839 * 110.99971 * 179.97438 * 13 12 11 15 15 C 1.53034 * 109.52356 * 185.83898 * 14 13 12 16 16 C 1.53119 * 109.27964 * 300.81961 * 15 14 13 17 17 C 1.50701 * 109.52545 * 177.55673 * 16 15 14 18 18 C 1.38224 * 119.61699 * 274.98127 * 17 16 15 19 19 C 1.38630 * 119.15955 * 179.78822 * 18 17 16 20 20 C 1.38676 * 118.41758 * 0.47674 * 19 18 17 21 21 C 1.38180 * 119.16381 * 359.50185 * 20 19 18 22 22 N 1.31856 * 119.61697 * 95.00135 * 17 16 15 23 23 C 1.53123 * 109.15763 * 57.65594 * 16 15 14 24 24 C 1.46849 * 110.99825 * 304.20886 * 13 12 11 25 25 C 1.52997 * 109.47400 * 59.99639 * 12 11 10 26 26 C 1.52998 * 109.47180 * 300.00446 * 25 12 11 27 27 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47034 * 305.42460 * 9 7 2 29 29 H 1.09002 * 109.46896 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.47251 * 60.00142 * 10 9 7 31 31 H 1.08997 * 109.47734 * 180.02562 * 11 10 9 32 32 H 1.09003 * 109.46740 * 59.99874 * 11 10 9 33 33 H 1.09002 * 109.47108 * 299.99753 * 12 11 10 34 34 H 1.08999 * 109.46314 * 65.82249 * 14 13 12 35 35 H 1.09005 * 109.46939 * 305.85459 * 14 13 12 36 36 H 1.09004 * 109.50821 * 180.87965 * 15 14 13 37 37 H 1.08999 * 109.53885 * 60.78582 * 15 14 13 38 38 H 1.08996 * 109.52630 * 297.68917 * 16 15 14 39 39 H 1.07994 * 120.42366 * 359.97438 * 18 17 16 40 40 H 1.08001 * 120.79555 * 180.23003 * 19 18 17 41 41 H 1.08002 * 120.41770 * 179.78124 * 20 19 18 42 42 H 1.07999 * 119.61441 * 180.25483 * 21 20 19 43 43 H 1.08996 * 109.50621 * 62.28653 * 23 16 15 44 44 H 1.09004 * 109.50175 * 182.40890 * 23 16 15 45 45 H 1.09002 * 109.46267 * 294.17465 * 24 13 12 46 46 H 1.09002 * 109.46192 * 54.14234 * 24 13 12 47 47 H 1.09002 * 109.46896 * 59.99985 * 25 12 11 48 48 H 1.08997 * 109.47879 * 180.02562 * 25 12 11 49 49 H 1.09004 * 109.47338 * 299.99659 * 26 25 12 50 50 H 1.09006 * 109.47631 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5920 7 6 2.0046 -1.1941 0.0005 8 1 3.0734 -1.2005 0.1556 9 6 1.2667 -2.4902 -0.2154 10 6 2.2324 -3.6630 -0.0345 11 6 3.3701 -3.5484 -1.0512 12 6 2.7929 -3.5767 -2.4678 13 7 3.8852 -3.4660 -3.4440 14 6 3.3676 -3.4905 -4.8179 15 6 4.5370 -3.5201 -5.8045 16 6 5.4107 -2.2811 -5.5904 17 6 6.5970 -2.3348 -6.5182 18 6 7.7272 -3.0361 -6.1421 19 6 8.8113 -3.0830 -7.0049 20 6 8.7214 -2.4113 -8.2148 21 6 7.5586 -1.7312 -8.5226 22 7 6.5450 -1.7119 -7.6792 23 6 5.8973 -2.2541 -4.1388 24 6 4.6887 -2.2614 -3.2001 25 6 1.8272 -2.4039 -2.6487 26 6 0.6895 -2.5186 -1.6321 27 1 -0.4850 0.8400 0.0004 28 1 0.4562 -2.5719 0.5088 29 1 1.6988 -4.6005 -0.1912 30 1 2.6436 -3.6428 0.9747 31 1 4.0579 -4.3841 -0.9227 32 1 3.9037 -2.6108 -0.8950 33 1 2.2592 -4.5142 -2.6241 34 1 2.7655 -2.5993 -4.9950 35 1 2.7514 -4.3786 -4.9583 36 1 4.1527 -3.5225 -6.8246 37 1 5.1319 -4.4182 -5.6378 38 1 4.8273 -1.3838 -5.7966 39 1 7.7641 -3.5437 -5.1896 40 1 9.7062 -3.6263 -6.7394 41 1 9.5481 -2.4234 -8.9097 42 1 7.4792 -1.2091 -9.4646 43 1 6.5134 -3.1322 -3.9451 44 1 6.4848 -1.3518 -3.9686 45 1 4.0807 -1.3757 -3.3846 46 1 5.0320 -2.2570 -2.1655 47 1 2.3609 -1.4664 -2.4925 48 1 1.4156 -2.4243 -3.6578 49 1 0.1558 -3.4561 -1.7883 50 1 0.0017 -1.6828 -1.7606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = 16.343424 kcal Electronic energy + Delta-G solvation = -27086.996213 eV Core-core repulsion = 23691.648432 eV Total energy + Delta-G solvation = -3395.347781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62397 -39.31727 -36.95238 -34.09861 -32.65113 -32.10127 -30.80700 -30.43005 -29.53162 -27.92489 -25.11045 -24.26185 -23.93028 -22.92670 -22.16683 -21.37725 -20.39476 -19.34575 -18.31329 -17.15126 -16.33776 -15.92391 -15.67696 -15.41214 -14.79247 -14.47919 -14.43822 -14.12976 -13.90237 -13.67814 -13.37750 -13.28155 -13.12401 -12.85458 -12.60606 -12.28357 -11.93168 -11.73140 -11.45950 -11.26985 -11.10416 -10.95761 -10.89487 -10.74450 -10.61041 -10.54145 -10.42440 -10.13158 -10.01302 -9.83781 -9.72485 -9.53825 -9.12306 -9.07733 -8.88726 -8.64283 -8.25039 -7.69155 -5.97878 -3.96934 0.93896 1.10776 3.30389 3.38815 3.40542 3.62394 4.05457 4.30080 4.46653 4.53751 4.64059 4.86961 4.93240 4.95819 5.04661 5.15394 5.34414 5.36066 5.46526 5.58273 5.61541 5.63110 5.68963 5.76511 5.84105 5.84982 5.97461 6.00295 6.03004 6.08337 6.13826 6.22286 6.26954 6.34930 6.42135 6.48806 6.54029 6.54463 6.58018 6.72753 6.76062 6.89525 7.10956 7.15281 7.35836 7.47623 7.58227 7.62554 7.78373 7.86679 7.96930 8.07575 8.51717 9.05904 9.64899 11.11682 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.003391 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.014736 B = 8255.857702 C = 8965.108451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.876 3.124 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.055 0.945 9 C 0.042 3.958 10 C -0.106 4.106 11 C -0.100 4.100 12 C 0.092 3.908 13 N -0.533 5.533 14 C 0.054 3.946 15 C -0.099 4.099 16 C -0.042 4.042 17 C 0.146 3.854 18 C -0.168 4.168 19 C -0.076 4.076 20 C -0.185 4.185 21 C 0.099 3.901 22 N -0.485 5.485 23 C -0.109 4.109 24 C 0.049 3.951 25 C -0.133 4.133 26 C -0.097 4.097 27 H 0.258 0.742 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.033 0.967 49 H 0.017 0.983 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.535 -7.339 -14.059 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.705 3.295 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.023 3.977 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.016 4.016 13 N -0.257 5.257 14 C -0.074 4.074 15 C -0.138 4.138 16 C -0.061 4.061 17 C 0.008 3.992 18 C -0.188 4.188 19 C -0.102 4.102 20 C -0.205 4.205 21 C -0.058 4.058 22 N -0.194 5.194 23 C -0.147 4.147 24 C -0.079 4.079 25 C -0.172 4.172 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.036 0.964 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.945 -7.170 -14.235 21.178 hybrid contribution 0.737 1.330 -0.084 1.523 sum 14.682 -5.839 -14.319 21.323 Atomic orbital electron populations 1.69960 1.05879 1.26225 1.50767 1.24926 0.94641 0.98724 0.95445 0.86824 0.80242 0.84523 0.77955 1.20848 1.21413 1.19884 1.21124 0.93832 0.90783 1.48217 0.92690 1.18699 0.94012 0.92198 0.92769 1.21539 0.97018 0.98520 0.97332 1.21521 0.97943 1.01174 0.93130 1.21698 0.90096 0.98055 0.91719 1.62273 1.23036 1.38085 1.02260 1.22029 0.95619 1.01032 0.88710 1.21562 0.96634 0.96905 0.98658 1.20202 0.92820 1.00318 0.92762 1.21342 0.94690 0.91584 0.91591 1.22093 0.94123 1.01169 1.01408 1.21604 0.98442 0.96634 0.93471 1.22105 0.99863 1.00281 0.98274 1.22741 0.88876 0.95973 0.98244 1.67531 1.29969 1.18556 1.03327 1.21741 0.98208 1.02069 0.92677 1.22138 0.93968 0.91912 0.99855 1.22024 0.98260 0.99452 0.97431 1.21379 0.96466 0.98764 0.96998 0.93220 0.95172 0.94848 0.93373 0.93765 0.91007 0.91368 0.94275 0.90980 0.91739 0.91284 0.89486 0.84322 0.84988 0.85083 0.82985 0.90904 0.91682 0.94069 0.89632 0.90893 0.94853 0.96396 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 12.16 55.43 0.67 -24.71 16 2 C 0.06 1.73 5.20 -17.82 -0.09 1.64 16 3 Si 0.88 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.50 -13.11 6.63 -34.44 -0.23 -13.33 16 8 H 0.05 1.43 6.53 -52.49 -0.34 1.09 16 9 C 0.04 1.00 2.45 -91.77 -0.22 0.78 16 10 C -0.11 -2.15 5.42 -26.73 -0.14 -2.29 16 11 C -0.10 -1.83 4.62 -26.73 -0.12 -1.96 16 12 C 0.09 1.60 2.30 -67.71 -0.16 1.45 16 13 N -0.53 -8.13 4.68 -226.69 -1.06 -9.19 16 14 C 0.05 0.75 4.89 -3.84 -0.02 0.74 16 15 C -0.10 -1.21 5.36 -26.65 -0.14 -1.35 16 16 C -0.04 -0.52 2.57 -91.65 -0.24 -0.76 16 17 C 0.15 1.76 5.80 -82.59 -0.48 1.29 16 18 C -0.17 -1.72 9.18 -39.44 -0.36 -2.08 16 19 C -0.08 -0.65 10.18 -39.27 -0.40 -1.05 16 20 C -0.19 -1.55 10.11 -39.44 -0.40 -1.94 16 21 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 22 N -0.49 -6.19 10.27 -9.48 -0.10 -6.29 16 23 C -0.11 -1.35 4.86 -26.65 -0.13 -1.48 16 24 C 0.05 0.74 4.68 -3.84 -0.02 0.73 16 25 C -0.13 -2.66 4.29 -26.73 -0.11 -2.77 16 26 C -0.10 -2.22 5.30 -26.73 -0.14 -2.36 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.41 4.59 -51.93 -0.24 1.17 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.59 6.63 -51.93 -0.34 0.25 16 35 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.14 1.25 6.25 -52.49 -0.33 0.92 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.04 0.70 6.71 -51.93 -0.35 0.35 16 46 H 0.09 1.35 5.90 -51.93 -0.31 1.05 16 47 H 0.07 1.63 5.70 -51.93 -0.30 1.33 16 48 H 0.03 0.63 6.54 -51.93 -0.34 0.29 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 1.80 6.90 -51.93 -0.36 1.44 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -28.65 367.11 -11.87 -40.51 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.28 Total: 2.06 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -3.61 Total: -23.98 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.48 Total: -40.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.65 -11.87 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.856 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds