Wall clock time and date at job start Tue Mar 31 2020 11:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47248 * 274.99103 * 3 2 1 5 5 H 1.48500 * 109.47341 * 34.99138 * 3 2 1 6 6 H 1.48505 * 109.47118 * 154.98936 * 3 2 1 7 7 C 1.37879 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00129 * 189.54499 * 7 2 1 9 9 C 1.50703 * 119.99877 * 9.55020 * 7 2 1 10 10 C 1.52997 * 109.46983 * 185.42598 * 9 7 2 11 11 C 1.52998 * 109.47180 * 299.99599 * 10 9 7 12 12 C 1.53002 * 109.47318 * 300.00496 * 11 10 9 13 13 N 1.46904 * 109.47315 * 179.97438 * 12 11 10 14 14 C 1.46839 * 110.99971 * 179.97438 * 13 12 11 15 15 C 1.53034 * 109.52356 * 185.83898 * 14 13 12 16 16 C 1.53119 * 109.27964 * 300.81961 * 15 14 13 17 17 C 1.50701 * 109.52545 * 177.55673 * 16 15 14 18 18 C 1.38224 * 119.61699 * 274.98127 * 17 16 15 19 19 C 1.38630 * 119.15955 * 179.78822 * 18 17 16 20 20 C 1.38676 * 118.41758 * 0.47674 * 19 18 17 21 21 C 1.38180 * 119.16381 * 359.50185 * 20 19 18 22 22 N 1.31856 * 119.61697 * 95.00135 * 17 16 15 23 23 C 1.53123 * 109.15763 * 57.65594 * 16 15 14 24 24 C 1.46849 * 110.99825 * 304.20886 * 13 12 11 25 25 C 1.52997 * 109.47400 * 59.99639 * 12 11 10 26 26 C 1.52998 * 109.47180 * 300.00446 * 25 12 11 27 27 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47034 * 305.42460 * 9 7 2 29 29 H 1.09002 * 109.46896 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.47251 * 60.00142 * 10 9 7 31 31 H 1.08997 * 109.47734 * 180.02562 * 11 10 9 32 32 H 1.09003 * 109.46740 * 59.99874 * 11 10 9 33 33 H 1.09002 * 109.47108 * 299.99753 * 12 11 10 34 34 H 1.08999 * 109.46314 * 65.82249 * 14 13 12 35 35 H 1.09005 * 109.46939 * 305.85459 * 14 13 12 36 36 H 1.09004 * 109.50821 * 180.87965 * 15 14 13 37 37 H 1.08999 * 109.53885 * 60.78582 * 15 14 13 38 38 H 1.08996 * 109.52630 * 297.68917 * 16 15 14 39 39 H 1.07994 * 120.42366 * 359.97438 * 18 17 16 40 40 H 1.08001 * 120.79555 * 180.23003 * 19 18 17 41 41 H 1.08002 * 120.41770 * 179.78124 * 20 19 18 42 42 H 1.07999 * 119.61441 * 180.25483 * 21 20 19 43 43 H 1.08996 * 109.50621 * 62.28653 * 23 16 15 44 44 H 1.09004 * 109.50175 * 182.40890 * 23 16 15 45 45 H 1.09002 * 109.46267 * 294.17465 * 24 13 12 46 46 H 1.09002 * 109.46192 * 54.14234 * 24 13 12 47 47 H 1.09002 * 109.46896 * 59.99985 * 25 12 11 48 48 H 1.08997 * 109.47879 * 180.02562 * 25 12 11 49 49 H 1.09004 * 109.47338 * 299.99659 * 26 25 12 50 50 H 1.09006 * 109.47631 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5920 7 6 2.0046 -1.1941 0.0005 8 1 3.0734 -1.2005 0.1556 9 6 1.2667 -2.4902 -0.2154 10 6 2.2324 -3.6630 -0.0345 11 6 3.3701 -3.5484 -1.0512 12 6 2.7929 -3.5767 -2.4678 13 7 3.8852 -3.4660 -3.4440 14 6 3.3676 -3.4905 -4.8179 15 6 4.5370 -3.5201 -5.8045 16 6 5.4107 -2.2811 -5.5904 17 6 6.5970 -2.3348 -6.5182 18 6 7.7272 -3.0361 -6.1421 19 6 8.8113 -3.0830 -7.0049 20 6 8.7214 -2.4113 -8.2148 21 6 7.5586 -1.7312 -8.5226 22 7 6.5450 -1.7119 -7.6792 23 6 5.8973 -2.2541 -4.1388 24 6 4.6887 -2.2614 -3.2001 25 6 1.8272 -2.4039 -2.6487 26 6 0.6895 -2.5186 -1.6321 27 1 -0.4850 0.8400 0.0004 28 1 0.4562 -2.5719 0.5088 29 1 1.6988 -4.6005 -0.1912 30 1 2.6436 -3.6428 0.9747 31 1 4.0579 -4.3841 -0.9227 32 1 3.9037 -2.6108 -0.8950 33 1 2.2592 -4.5142 -2.6241 34 1 2.7655 -2.5993 -4.9950 35 1 2.7514 -4.3786 -4.9583 36 1 4.1527 -3.5225 -6.8246 37 1 5.1319 -4.4182 -5.6378 38 1 4.8273 -1.3838 -5.7966 39 1 7.7641 -3.5437 -5.1896 40 1 9.7062 -3.6263 -6.7394 41 1 9.5481 -2.4234 -8.9097 42 1 7.4792 -1.2091 -9.4646 43 1 6.5134 -3.1322 -3.9451 44 1 6.4848 -1.3518 -3.9686 45 1 4.0807 -1.3757 -3.3846 46 1 5.0320 -2.2570 -2.1655 47 1 2.3609 -1.4664 -2.4925 48 1 1.4156 -2.4243 -3.6578 49 1 0.1558 -3.4561 -1.7883 50 1 0.0017 -1.6828 -1.7606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:19 Heat of formation + Delta-G solvation = 1.490054 kcal Electronic energy + Delta-G solvation = -27087.640303 eV Core-core repulsion = 23691.648432 eV Total energy + Delta-G solvation = -3395.991871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49228 -40.57073 -38.35786 -35.45892 -33.90991 -33.35626 -31.99701 -31.53783 -31.11845 -29.37285 -26.81482 -25.61236 -24.77941 -24.01859 -23.30384 -22.80324 -21.77627 -20.74413 -19.84970 -17.90464 -17.70618 -17.12071 -17.04629 -16.62604 -16.28566 -15.80435 -15.60839 -15.23657 -15.12939 -14.92709 -14.76981 -14.51251 -14.40726 -13.96252 -13.86828 -13.57969 -13.31524 -13.16391 -12.89702 -12.79515 -12.68584 -12.54512 -12.43026 -12.20245 -12.04994 -11.87165 -11.84401 -11.54368 -11.39137 -11.23348 -10.90787 -10.75464 -10.64473 -10.49631 -10.31860 -10.29927 -9.82622 -9.06055 -8.08995 -6.12314 0.21939 0.41894 1.35685 1.39087 1.46508 2.43268 2.88478 3.02343 3.23418 3.26314 3.70872 3.90207 4.02176 4.05574 4.12861 4.15853 4.24672 4.26532 4.33666 4.34299 4.44352 4.49037 4.62799 4.69395 4.70587 4.73159 4.79148 4.82862 4.89588 4.91162 4.95721 4.99748 5.00759 5.02096 5.08605 5.16877 5.18506 5.25394 5.31823 5.35146 5.39382 5.48078 5.54626 5.64551 5.68255 5.71995 5.85553 5.94372 6.12648 6.26481 6.31451 6.46674 6.98938 7.12176 7.52152 9.00519 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.003391 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.014736 B = 8255.857702 C = 8965.108451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.931 3.069 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.101 4.101 11 C -0.092 4.092 12 C 0.100 3.900 13 N -0.521 5.521 14 C 0.053 3.947 15 C -0.088 4.088 16 C -0.037 4.037 17 C 0.124 3.876 18 C -0.174 4.174 19 C -0.076 4.076 20 C -0.178 4.178 21 C 0.082 3.918 22 N -0.521 5.521 23 C -0.098 4.098 24 C 0.050 3.950 25 C -0.121 4.121 26 C -0.092 4.092 27 H 0.256 0.744 28 H -0.009 1.009 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.021 0.979 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.014 0.986 46 H 0.079 0.921 47 H 0.045 0.955 48 H 0.041 0.959 49 H 0.033 0.967 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.691 -8.997 -15.424 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.183 4.183 3 Si 0.758 3.242 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.139 4.139 11 C -0.130 4.130 12 C -0.008 4.008 13 N -0.244 5.244 14 C -0.075 4.075 15 C -0.126 4.126 16 C -0.057 4.057 17 C -0.013 4.013 18 C -0.194 4.194 19 C -0.102 4.102 20 C -0.197 4.197 21 C -0.074 4.074 22 N -0.231 5.231 23 C -0.136 4.136 24 C -0.078 4.078 25 C -0.160 4.160 26 C -0.131 4.131 27 H 0.065 0.935 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.189 0.811 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.052 0.948 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.120 -8.832 -15.599 24.788 hybrid contribution -0.238 1.843 0.299 1.882 sum 16.882 -6.988 -15.301 23.832 Atomic orbital electron populations 1.70087 1.07229 1.26646 1.52384 1.25595 0.95267 1.01756 0.95685 0.85947 0.79505 0.81044 0.77726 1.20924 1.21488 1.18752 1.21412 0.93875 0.91733 1.46804 0.92620 1.18696 0.93688 0.93335 0.92468 1.21444 0.96914 0.97407 0.98097 1.21428 0.97319 1.01401 0.92828 1.21577 0.90118 0.97033 0.92104 1.62324 1.21847 1.37778 1.02479 1.22101 0.96416 1.00702 0.88240 1.21461 0.95907 0.97210 0.98072 1.20068 0.93195 0.99314 0.93086 1.21228 0.95159 0.93179 0.91751 1.22244 0.93963 1.00925 1.02233 1.22018 0.98874 0.96218 0.93056 1.22478 0.99933 0.98659 0.98635 1.23181 0.89069 0.96549 0.98643 1.67453 1.31733 1.19718 1.04202 1.21650 0.96986 1.03028 0.91902 1.22136 0.94619 0.90754 1.00323 1.21881 0.97631 0.99620 0.96880 1.21245 0.96825 0.97899 0.97111 0.93520 0.99065 0.92990 0.93470 0.91164 0.92583 0.90147 0.96044 0.89846 0.91550 0.90183 0.91994 0.83217 0.81959 0.81922 0.81141 0.89099 0.91432 0.96782 0.90231 0.93611 0.94035 0.94845 0.95039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 12.16 21.45 0.26 -54.45 16 2 C 0.01 0.82 5.20 84.65 0.44 1.26 16 3 Si 0.93 44.23 29.55 68.60 2.03 46.26 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.50 -26.72 6.63 25.60 0.17 -26.55 16 8 H 0.06 2.92 6.53 -2.91 -0.02 2.90 16 9 C 0.04 1.81 2.45 -11.54 -0.03 1.78 16 10 C -0.10 -3.98 5.42 30.59 0.17 -3.82 16 11 C -0.09 -3.22 4.62 30.59 0.14 -3.08 16 12 C 0.10 3.34 2.30 44.91 0.10 3.45 16 13 N -0.52 -15.10 4.68 -871.13 -4.08 -19.18 16 14 C 0.05 1.42 4.89 86.33 0.42 1.84 16 15 C -0.09 -2.03 5.36 30.65 0.16 -1.86 16 16 C -0.04 -0.91 2.57 -11.46 -0.03 -0.94 16 17 C 0.12 2.85 5.80 42.55 0.25 3.10 16 18 C -0.17 -3.11 9.18 22.36 0.21 -2.91 16 19 C -0.08 -1.04 10.18 22.47 0.23 -0.81 16 20 C -0.18 -2.37 10.11 22.36 0.23 -2.15 16 21 C 0.08 1.49 11.18 84.67 0.95 2.43 16 22 N -0.52 -12.90 10.27 -183.89 -1.89 -14.79 16 23 C -0.10 -2.30 4.86 30.65 0.15 -2.15 16 24 C 0.05 1.48 4.68 86.32 0.40 1.88 16 25 C -0.12 -4.89 4.29 30.59 0.13 -4.76 16 26 C -0.09 -4.29 5.30 30.59 0.16 -4.12 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H -0.01 -0.50 8.09 -2.39 -0.02 -0.52 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.15 4.59 -2.39 -0.01 2.14 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.02 0.65 6.63 -2.39 -0.02 0.63 16 35 H 0.08 2.04 8.12 -2.38 -0.02 2.02 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.15 2.23 6.25 -2.91 -0.02 2.21 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.09 1.83 6.37 -2.39 -0.02 1.81 16 44 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.01 0.49 6.71 -2.39 -0.02 0.47 16 46 H 0.08 2.46 5.90 -2.39 -0.01 2.45 16 47 H 0.05 2.10 5.70 -2.39 -0.01 2.08 16 48 H 0.04 1.58 6.54 -2.39 -0.02 1.57 16 49 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.03 1.68 6.90 -2.38 -0.02 1.67 16 Total: -1.00 -64.11 367.11 1.48 -62.63 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.91 Total: 16.94 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 4.25 Total: -37.41 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -5.71 Total: -88.42 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.11 1.48 -62.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.118 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds