Wall clock time and date at job start Tue Mar 31 2020 11:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 11 11 C 1.53003 * 109.46915 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47301 * 60.00084 * 11 10 9 13 13 N 1.46896 * 109.47256 * 180.02562 * 12 11 10 14 14 C 1.46846 * 111.00013 * 176.04779 * 13 12 11 15 15 C 1.53039 * 109.52333 * 174.15893 * 14 13 12 16 16 C 1.53116 * 109.28049 * 59.17410 * 15 14 13 17 17 C 1.53122 * 109.16285 * 302.34510 * 16 15 14 18 18 H 1.08994 * 109.50886 * 297.67567 * 17 16 15 19 19 C 1.50701 * 109.50547 * 177.58908 * 17 16 15 20 20 C 1.38228 * 119.61898 * 324.73880 * 19 17 16 21 21 C 1.38635 * 119.15700 * 179.75173 * 20 19 17 22 22 C 1.38668 * 118.41974 * 0.50208 * 21 20 19 23 23 C 1.38180 * 119.16649 * 359.73564 * 22 21 20 24 24 N 1.31852 * 119.61367 * 144.99967 * 19 17 16 25 25 C 1.46847 * 111.00205 * 51.83050 * 13 12 11 26 26 C 1.53005 * 109.46653 * 299.99854 * 12 11 10 27 27 C 1.52994 * 109.46916 * 60.00417 * 26 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09003 * 109.47532 * 300.00309 * 10 9 7 31 31 H 1.09001 * 109.47094 * 60.00208 * 10 9 7 32 32 H 1.09000 * 109.46939 * 299.99421 * 11 10 9 33 33 H 1.09004 * 109.47038 * 180.02562 * 11 10 9 34 34 H 1.08994 * 109.46974 * 59.99825 * 12 11 10 35 35 H 1.08998 * 109.46017 * 294.17028 * 14 13 12 36 36 H 1.08996 * 109.46321 * 54.14251 * 14 13 12 37 37 H 1.08997 * 109.50442 * 179.11783 * 15 14 13 38 38 H 1.09002 * 109.49923 * 299.19564 * 15 14 13 39 39 H 1.09001 * 109.52567 * 62.25319 * 16 15 14 40 40 H 1.08995 * 109.52488 * 182.37996 * 16 15 14 41 41 H 1.07996 * 120.42156 * 359.97150 * 20 19 17 42 42 H 1.07997 * 120.78687 * 180.21245 * 21 20 19 43 43 H 1.08001 * 120.41816 * 179.71251 * 22 21 20 44 44 H 1.08004 * 119.62050 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.46428 * 305.85756 * 25 13 12 46 46 H 1.08997 * 109.46044 * 65.83094 * 25 13 12 47 47 H 1.08994 * 109.47407 * 299.99706 * 26 12 11 48 48 H 1.09001 * 109.46679 * 179.97438 * 26 12 11 49 49 H 1.09004 * 109.46806 * 179.97438 * 27 26 12 50 50 H 1.09000 * 109.47828 * 59.99866 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 0.3713 -2.5857 1.2434 11 6 -0.3933 -3.9110 1.2378 12 6 0.6012 -5.0736 1.2330 13 7 -0.1329 -6.3460 1.2270 14 6 0.7888 -7.4849 1.1278 15 6 0.0047 -8.7913 1.2705 16 6 -1.0533 -8.8692 0.1665 17 6 -1.9707 -7.6470 0.2623 18 1 -2.4904 -7.6561 1.2203 19 6 -2.9787 -7.6854 -0.8574 20 6 -2.6092 -8.1842 -2.0924 21 6 -3.5456 -8.2198 -3.1141 22 6 -4.8212 -7.7406 -2.8572 23 6 -5.1163 -7.2520 -1.5988 24 7 -4.2014 -7.2380 -0.6489 25 6 -1.1293 -6.3736 0.1486 26 6 1.4809 -4.9870 -0.0159 27 6 2.2455 -3.6618 -0.0101 28 1 -0.4850 0.8401 -0.0004 29 1 0.6244 -2.5529 -0.8956 30 1 0.9978 -2.5319 2.1338 31 1 -0.3370 -1.7572 1.2471 32 1 -1.0200 -3.9651 0.3476 33 1 -1.0204 -3.9725 2.1273 34 1 1.2277 -5.0194 2.1232 35 1 1.2878 -7.4648 0.1589 36 1 1.5334 -7.4196 1.9211 37 1 0.6868 -9.6368 1.1812 38 1 -0.4828 -8.8184 2.2451 39 1 -0.5636 -8.8816 -0.8072 40 1 -1.6421 -9.7782 0.2896 41 1 -1.6049 -8.5448 -2.2584 42 1 -3.2864 -8.6072 -4.0883 43 1 -5.5746 -7.7488 -3.6310 44 1 -6.1074 -6.8766 -1.3908 45 1 -1.7777 -5.5014 0.2308 46 1 -0.6213 -6.3589 -0.8156 47 1 0.8543 -5.0412 -0.9061 48 1 2.1897 -5.8150 -0.0191 49 1 2.8725 -3.6003 -0.8997 50 1 2.8721 -3.6076 0.8801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:41 Heat of formation + Delta-G solvation = 15.731082 kcal Electronic energy + Delta-G solvation = -26974.258012 eV Core-core repulsion = 23578.883678 eV Total energy + Delta-G solvation = -3395.374334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63160 -39.34153 -36.87505 -34.01886 -32.74738 -32.35016 -31.57008 -29.89564 -29.26562 -28.25232 -25.02304 -24.29683 -23.80465 -23.24622 -22.08763 -21.18633 -20.34391 -19.45866 -18.30327 -17.10936 -16.33132 -16.27556 -15.94737 -15.29171 -14.90308 -14.60781 -14.41751 -14.01542 -13.91274 -13.74168 -13.50463 -13.25332 -13.07749 -12.84592 -12.58750 -12.42807 -12.11033 -11.84662 -11.55512 -11.38481 -11.14243 -10.97451 -10.84176 -10.74774 -10.61185 -10.55359 -10.35334 -10.22502 -10.02943 -9.97067 -9.63957 -9.47363 -9.31594 -9.04556 -8.83739 -8.68427 -8.24662 -7.85713 -5.92966 -3.99215 0.99279 1.17269 3.34353 3.39172 3.41627 3.66351 3.97365 4.32623 4.47919 4.57469 4.71161 4.83253 4.93308 4.97542 4.98673 5.03303 5.26772 5.35912 5.41918 5.45984 5.51070 5.55254 5.56314 5.63788 5.72481 5.77210 5.83071 5.90881 5.94610 6.04247 6.05794 6.10790 6.16405 6.24577 6.33179 6.35422 6.46813 6.56532 6.58737 6.62370 6.76230 6.83705 6.94829 7.14904 7.31929 7.42701 7.47715 7.59622 7.80664 7.93548 8.07647 8.22539 8.52852 9.04731 9.65118 11.12476 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.003418 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.830705 B = 8191.094473 C = 9361.128168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.107 4.107 11 C -0.111 4.111 12 C 0.091 3.909 13 N -0.532 5.532 14 C 0.051 3.949 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.036 4.036 18 H 0.097 0.903 19 C 0.144 3.856 20 C -0.171 4.171 21 C -0.075 4.075 22 C -0.183 4.183 23 C 0.101 3.899 24 N -0.479 5.479 25 C 0.064 3.936 26 C -0.146 4.146 27 C -0.104 4.104 28 H 0.259 0.741 29 H 0.022 0.978 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.155 0.845 45 H 0.087 0.913 46 H 0.034 0.966 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.043 0.957 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 -19.939 -2.712 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.149 4.149 12 C -0.017 4.017 13 N -0.255 5.255 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.056 4.056 18 H 0.115 0.885 19 C 0.005 3.995 20 C -0.190 4.190 21 C -0.101 4.101 22 C -0.203 4.203 23 C -0.056 4.056 24 N -0.188 5.188 25 C -0.064 4.064 26 C -0.185 4.185 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.763 -19.527 -1.432 20.715 hybrid contribution 1.064 0.698 -1.815 2.217 sum -5.699 -18.829 -3.247 19.939 Atomic orbital electron populations 1.69873 1.05820 1.26347 1.50848 1.24962 0.94819 0.98918 0.95245 0.86725 0.79651 0.83463 0.78524 1.20429 1.21349 1.20336 1.21202 0.92785 0.90846 1.50368 0.92957 1.18635 0.92567 0.91400 0.94261 1.21598 0.99556 0.94786 0.98634 1.21762 0.97309 0.95256 1.00549 1.21786 0.94591 0.87848 0.97444 1.62207 1.15529 1.02645 1.45093 1.22097 0.94717 0.90539 1.00392 1.21572 0.97487 0.96834 0.99332 1.21700 0.97040 0.97078 0.99316 1.20135 0.93096 0.95705 0.96648 0.88474 1.21246 0.91678 0.92630 0.93907 1.22028 1.00935 1.02097 0.93969 1.21581 0.93164 0.96232 0.99123 1.22119 0.97787 1.01535 0.98817 1.22776 0.98539 0.95203 0.89043 1.67533 1.01669 1.14784 1.34802 1.22087 0.94361 0.97094 0.92880 1.22200 0.98850 0.98782 0.98624 1.21558 0.98562 0.94143 0.99923 0.93061 0.96026 0.94792 0.88975 0.92861 0.93074 0.90386 0.94624 0.90924 0.91636 0.91034 0.91904 0.91847 0.84779 0.85012 0.84983 0.82801 0.89503 0.94794 0.92852 0.93573 0.93792 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.33 55.43 0.63 -25.02 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 10 C -0.11 -2.53 4.98 -26.73 -0.13 -2.67 16 11 C -0.11 -2.19 4.70 -26.73 -0.13 -2.32 16 12 C 0.09 1.56 2.37 -67.71 -0.16 1.40 16 13 N -0.53 -7.89 4.71 -226.70 -1.07 -8.96 16 14 C 0.05 0.63 4.77 -3.83 -0.02 0.61 16 15 C -0.11 -1.16 6.09 -26.65 -0.16 -1.32 16 16 C -0.11 -1.15 4.78 -26.61 -0.13 -1.28 16 17 C -0.04 -0.45 2.67 -91.68 -0.24 -0.70 16 18 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 19 C 0.14 1.83 5.79 -82.59 -0.48 1.35 16 20 C -0.17 -1.85 9.18 -39.44 -0.36 -2.21 16 21 C -0.07 -0.71 10.18 -39.28 -0.40 -1.11 16 22 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 23 C 0.10 1.12 11.18 -17.55 -0.20 0.92 16 24 N -0.48 -6.55 10.27 -9.47 -0.10 -6.65 16 25 C 0.06 0.94 3.93 -3.83 -0.02 0.93 16 26 C -0.15 -2.57 4.48 -26.73 -0.12 -2.69 16 27 C -0.10 -2.17 5.14 -26.74 -0.14 -2.31 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 2.46 6.08 -51.93 -0.32 2.15 16 32 H 0.05 1.09 6.19 -51.93 -0.32 0.77 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.04 0.45 6.59 -51.93 -0.34 0.11 16 36 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.13 1.24 6.27 -52.49 -0.33 0.91 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.09 1.47 5.84 -51.93 -0.30 1.17 16 46 H 0.03 0.52 6.81 -51.93 -0.35 0.16 16 47 H 0.05 0.98 6.75 -51.93 -0.35 0.63 16 48 H 0.05 0.73 6.48 -51.93 -0.34 0.39 16 49 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -29.59 370.64 -12.08 -41.67 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.44 Total: 2.25 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -3.66 Total: -25.34 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.54 Total: -40.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.59 -12.08 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.398 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds