Wall clock time and date at job start Tue Mar 31 2020 11:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 11 11 C 1.53003 * 109.46915 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47301 * 60.00084 * 11 10 9 13 13 N 1.46896 * 109.47256 * 180.02562 * 12 11 10 14 14 C 1.46846 * 111.00013 * 176.04779 * 13 12 11 15 15 C 1.53039 * 109.52333 * 174.15893 * 14 13 12 16 16 C 1.53116 * 109.28049 * 59.17410 * 15 14 13 17 17 C 1.53122 * 109.16285 * 302.34510 * 16 15 14 18 18 H 1.08994 * 109.50886 * 297.67567 * 17 16 15 19 19 C 1.50701 * 109.50547 * 177.58908 * 17 16 15 20 20 C 1.38228 * 119.61898 * 324.73880 * 19 17 16 21 21 C 1.38635 * 119.15700 * 179.75173 * 20 19 17 22 22 C 1.38668 * 118.41974 * 0.50208 * 21 20 19 23 23 C 1.38180 * 119.16649 * 359.73564 * 22 21 20 24 24 N 1.31852 * 119.61367 * 144.99967 * 19 17 16 25 25 C 1.46847 * 111.00205 * 51.83050 * 13 12 11 26 26 C 1.53005 * 109.46653 * 299.99854 * 12 11 10 27 27 C 1.52994 * 109.46916 * 60.00417 * 26 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09003 * 109.47532 * 300.00309 * 10 9 7 31 31 H 1.09001 * 109.47094 * 60.00208 * 10 9 7 32 32 H 1.09000 * 109.46939 * 299.99421 * 11 10 9 33 33 H 1.09004 * 109.47038 * 180.02562 * 11 10 9 34 34 H 1.08994 * 109.46974 * 59.99825 * 12 11 10 35 35 H 1.08998 * 109.46017 * 294.17028 * 14 13 12 36 36 H 1.08996 * 109.46321 * 54.14251 * 14 13 12 37 37 H 1.08997 * 109.50442 * 179.11783 * 15 14 13 38 38 H 1.09002 * 109.49923 * 299.19564 * 15 14 13 39 39 H 1.09001 * 109.52567 * 62.25319 * 16 15 14 40 40 H 1.08995 * 109.52488 * 182.37996 * 16 15 14 41 41 H 1.07996 * 120.42156 * 359.97150 * 20 19 17 42 42 H 1.07997 * 120.78687 * 180.21245 * 21 20 19 43 43 H 1.08001 * 120.41816 * 179.71251 * 22 21 20 44 44 H 1.08004 * 119.62050 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.46428 * 305.85756 * 25 13 12 46 46 H 1.08997 * 109.46044 * 65.83094 * 25 13 12 47 47 H 1.08994 * 109.47407 * 299.99706 * 26 12 11 48 48 H 1.09001 * 109.46679 * 179.97438 * 26 12 11 49 49 H 1.09004 * 109.46806 * 179.97438 * 27 26 12 50 50 H 1.09000 * 109.47828 * 59.99866 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 0.3713 -2.5857 1.2434 11 6 -0.3933 -3.9110 1.2378 12 6 0.6012 -5.0736 1.2330 13 7 -0.1329 -6.3460 1.2270 14 6 0.7888 -7.4849 1.1278 15 6 0.0047 -8.7913 1.2705 16 6 -1.0533 -8.8692 0.1665 17 6 -1.9707 -7.6470 0.2623 18 1 -2.4904 -7.6561 1.2203 19 6 -2.9787 -7.6854 -0.8574 20 6 -2.6092 -8.1842 -2.0924 21 6 -3.5456 -8.2198 -3.1141 22 6 -4.8212 -7.7406 -2.8572 23 6 -5.1163 -7.2520 -1.5988 24 7 -4.2014 -7.2380 -0.6489 25 6 -1.1293 -6.3736 0.1486 26 6 1.4809 -4.9870 -0.0159 27 6 2.2455 -3.6618 -0.0101 28 1 -0.4850 0.8401 -0.0004 29 1 0.6244 -2.5529 -0.8956 30 1 0.9978 -2.5319 2.1338 31 1 -0.3370 -1.7572 1.2471 32 1 -1.0200 -3.9651 0.3476 33 1 -1.0204 -3.9725 2.1273 34 1 1.2277 -5.0194 2.1232 35 1 1.2878 -7.4648 0.1589 36 1 1.5334 -7.4196 1.9211 37 1 0.6868 -9.6368 1.1812 38 1 -0.4828 -8.8184 2.2451 39 1 -0.5636 -8.8816 -0.8072 40 1 -1.6421 -9.7782 0.2896 41 1 -1.6049 -8.5448 -2.2584 42 1 -3.2864 -8.6072 -4.0883 43 1 -5.5746 -7.7488 -3.6310 44 1 -6.1074 -6.8766 -1.3908 45 1 -1.7777 -5.5014 0.2308 46 1 -0.6213 -6.3589 -0.8156 47 1 0.8543 -5.0412 -0.9061 48 1 2.1897 -5.8150 -0.0191 49 1 2.8725 -3.6003 -0.8997 50 1 2.8721 -3.6076 0.8801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:40 Heat of formation + Delta-G solvation = -0.069289 kcal Electronic energy + Delta-G solvation = -26974.943168 eV Core-core repulsion = 23578.883678 eV Total energy + Delta-G solvation = -3396.059490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56162 -40.53255 -38.28874 -35.49470 -33.99934 -33.43081 -32.83488 -31.47886 -30.36509 -29.81611 -26.68886 -25.25987 -25.00404 -24.33390 -23.45292 -22.39525 -21.77751 -20.79950 -19.76227 -18.39684 -17.94235 -17.16220 -17.05808 -16.60954 -16.13531 -16.03353 -15.52844 -15.16082 -15.10930 -14.99564 -14.68523 -14.57661 -14.40600 -14.02318 -13.93868 -13.71405 -13.37335 -13.26119 -12.90733 -12.86410 -12.62534 -12.56469 -12.37349 -12.29508 -12.07492 -11.90995 -11.67003 -11.60363 -11.36691 -11.29621 -11.05744 -10.79114 -10.72234 -10.60584 -10.35830 -10.31535 -9.86964 -9.10155 -8.07190 -6.21988 0.18560 0.39457 1.40389 1.41735 1.49400 2.43167 2.77308 2.98945 3.18885 3.37886 3.72224 3.88965 3.91316 4.00122 4.06995 4.13193 4.15423 4.22207 4.27792 4.34974 4.36771 4.39380 4.52544 4.62377 4.65709 4.69481 4.74461 4.78497 4.84720 4.86735 4.93851 4.96625 5.00460 5.01944 5.04815 5.15188 5.17220 5.27497 5.27917 5.30214 5.35538 5.38897 5.44260 5.50755 5.62530 5.68417 5.82422 6.02014 6.13441 6.21364 6.31680 6.41285 6.91003 7.10729 7.46234 8.96474 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.003418 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.830705 B = 8191.094473 C = 9361.128168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.048 3.952 10 C -0.098 4.098 11 C -0.099 4.099 12 C 0.100 3.900 13 N -0.534 5.534 14 C 0.047 3.953 15 C -0.108 4.108 16 C -0.107 4.107 17 C -0.028 4.028 18 H 0.078 0.922 19 C 0.119 3.881 20 C -0.176 4.176 21 C -0.078 4.078 22 C -0.177 4.177 23 C 0.081 3.919 24 N -0.518 5.518 25 C 0.072 3.928 26 C -0.133 4.133 27 C -0.097 4.097 28 H 0.259 0.741 29 H -0.016 1.016 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.171 0.829 45 H 0.054 0.946 46 H 0.029 0.971 47 H 0.043 0.957 48 H 0.076 0.924 49 H 0.042 0.958 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -22.146 -3.490 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.008 4.008 13 N -0.257 5.257 14 C -0.081 4.081 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.048 4.048 18 H 0.097 0.903 19 C -0.019 4.019 20 C -0.196 4.196 21 C -0.103 4.103 22 C -0.197 4.197 23 C -0.075 4.075 24 N -0.227 5.227 25 C -0.056 4.056 26 C -0.172 4.172 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.003 0.997 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.168 0.832 42 H 0.181 0.819 43 H 0.181 0.819 44 H 0.188 0.812 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.061 0.939 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.750 -21.754 -2.208 22.609 hybrid contribution 0.673 1.407 -1.621 2.249 sum -5.077 -20.347 -3.828 21.317 Atomic orbital electron populations 1.70036 1.07242 1.27028 1.51420 1.25763 0.95633 1.02413 0.94883 0.85703 0.78445 0.79207 0.78858 1.19696 1.21048 1.19511 1.21613 0.93027 0.92368 1.50452 0.92995 1.18595 0.92989 0.92477 0.93018 1.21375 0.98732 0.95690 0.97872 1.21571 0.97428 0.94713 1.00008 1.21568 0.93713 0.88123 0.97398 1.62190 1.15885 1.02365 1.45257 1.22251 0.94687 0.90285 1.00841 1.21563 0.97616 0.96372 0.99046 1.21683 0.96690 0.96164 0.99955 1.20017 0.93130 0.95608 0.96003 0.90329 1.21337 0.91646 0.94071 0.94864 1.22246 1.02056 1.01731 0.93531 1.22020 0.92826 0.95445 1.00051 1.22487 0.98605 0.99910 0.98682 1.23202 0.98961 0.95713 0.89659 1.67468 1.02702 1.16040 1.36538 1.21944 0.94004 0.97219 0.92453 1.22087 0.98931 0.97818 0.98407 1.21422 0.97776 0.94232 1.00061 0.93181 0.99739 0.95105 0.92632 0.94255 0.92800 0.89972 0.94284 0.90134 0.88903 0.91459 0.90819 0.90542 0.83214 0.81912 0.81905 0.81178 0.92799 0.95319 0.93811 0.90517 0.93871 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.81 11.33 21.45 0.24 -54.57 16 2 C 0.01 0.65 5.31 84.66 0.45 1.10 16 3 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.54 -30.41 8.56 25.60 0.22 -30.19 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.05 2.46 2.10 -11.54 -0.02 2.44 16 10 C -0.10 -4.84 4.98 30.59 0.15 -4.69 16 11 C -0.10 -4.08 4.70 30.59 0.14 -3.94 16 12 C 0.10 3.40 2.37 44.92 0.11 3.51 16 13 N -0.53 -15.44 4.71 -871.13 -4.10 -19.55 16 14 C 0.05 1.04 4.77 86.33 0.41 1.45 16 15 C -0.11 -1.88 6.09 30.65 0.19 -1.70 16 16 C -0.11 -1.93 4.78 30.67 0.15 -1.78 16 17 C -0.03 -0.69 2.67 -11.48 -0.03 -0.72 16 18 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 19 C 0.12 3.01 5.79 42.55 0.25 3.25 16 20 C -0.18 -3.55 9.18 22.36 0.21 -3.34 16 21 C -0.08 -1.28 10.18 22.47 0.23 -1.05 16 22 C -0.18 -2.96 10.11 22.36 0.23 -2.73 16 23 C 0.08 1.76 11.18 84.67 0.95 2.71 16 24 N -0.52 -14.48 10.27 -183.88 -1.89 -16.36 16 25 C 0.07 2.15 3.93 86.33 0.34 2.49 16 26 C -0.13 -4.59 4.48 30.59 0.14 -4.45 16 27 C -0.10 -4.04 5.14 30.59 0.16 -3.88 16 28 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 3.14 6.08 -2.39 -0.01 3.13 16 32 H 0.04 1.71 6.19 -2.39 -0.01 1.70 16 33 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.04 0.86 6.59 -2.39 -0.02 0.84 16 36 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.19 6.38 -2.39 -0.02 1.17 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.15 2.41 6.27 -2.91 -0.02 2.39 16 42 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 45 H 0.05 1.94 5.84 -2.39 -0.01 1.92 16 46 H 0.03 0.87 6.81 -2.39 -0.02 0.86 16 47 H 0.04 1.59 6.75 -2.39 -0.02 1.58 16 48 H 0.08 2.21 6.48 -2.39 -0.02 2.19 16 49 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 50 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -67.06 370.64 1.43 -65.63 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.90 Total: 19.75 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 4.25 Total: -41.53 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -5.75 Total: -90.48 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.06 1.43 -65.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.563 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds