Wall clock time and date at job start Tue Mar 31 2020 11:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48501 * 109.46857 * 239.99736 * 3 2 1 5 5 H 1.48500 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47400 * 119.99417 * 3 2 1 7 7 C 1.37880 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46828 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46883 * 59.99724 * 10 9 7 12 12 C 1.52998 * 109.47016 * 60.00446 * 11 10 9 13 13 N 1.46901 * 109.46930 * 179.97438 * 12 11 10 14 14 C 1.47441 * 111.00331 * 63.78377 * 13 12 11 15 15 C 1.54313 * 107.23196 * 123.25790 * 14 13 12 16 16 C 1.55133 * 103.02132 * 22.28517 * 15 14 13 17 17 C 1.47847 * 110.99959 * 184.62765 * 13 12 11 18 18 H 1.08999 * 110.37356 * 332.46815 * 17 13 12 19 19 C 1.53004 * 110.37305 * 94.80426 * 17 13 12 20 20 C 1.50704 * 109.47214 * 295.00417 * 19 17 13 21 21 C 1.38224 * 119.62271 * 125.00162 * 20 19 17 22 22 C 1.38620 * 119.16462 * 179.97438 * 21 20 19 23 23 C 1.38681 * 118.41791 * 359.97438 * 22 21 20 24 24 C 1.38177 * 119.16586 * 359.97438 * 23 22 21 25 25 N 1.31859 * 119.61394 * 304.71990 * 20 19 17 26 26 C 1.52997 * 109.47044 * 299.99325 * 12 11 10 27 27 C 1.52997 * 109.47090 * 60.00348 * 26 12 11 28 28 H 0.96998 * 120.00541 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47391 * 60.00248 * 9 7 2 30 30 H 1.09000 * 109.46906 * 299.99977 * 10 9 7 31 31 H 1.08997 * 109.46820 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.47354 * 299.99626 * 11 10 9 33 33 H 1.09000 * 109.46514 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47203 * 59.99418 * 12 11 10 35 35 H 1.08996 * 109.88975 * 242.66515 * 14 13 12 36 36 H 1.09001 * 109.88377 * 3.85677 * 14 13 12 37 37 H 1.08998 * 110.70667 * 140.67059 * 15 14 13 38 38 H 1.09007 * 110.70642 * 263.72557 * 15 14 13 39 39 H 1.09005 * 110.99473 * 82.43797 * 16 15 14 40 40 H 1.09006 * 110.99440 * 206.21638 * 16 15 14 41 41 H 1.08999 * 109.46931 * 55.00036 * 19 17 13 42 42 H 1.08997 * 109.47287 * 174.99706 * 19 17 13 43 43 H 1.08002 * 120.41526 * 359.97438 * 21 20 19 44 44 H 1.07993 * 120.79587 * 180.02562 * 22 21 20 45 45 H 1.08001 * 120.41684 * 180.02562 * 23 22 21 46 46 H 1.07998 * 119.61998 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.47474 * 179.97438 * 26 12 11 48 48 H 1.08997 * 109.47647 * 300.00383 * 26 12 11 49 49 H 1.09004 * 109.47487 * 179.97438 * 27 26 12 50 50 H 1.09007 * 109.47300 * 59.99832 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 3.1249 -3.5810 1.2498 12 6 2.2453 -3.6621 2.4990 13 7 3.0900 -3.5848 3.6984 14 6 3.7752 -2.2818 3.7791 15 6 3.3925 -1.6471 5.1326 16 6 2.9693 -2.8717 5.9858 17 6 2.2862 -3.7708 4.9253 18 1 1.2588 -3.4473 4.7586 19 6 2.3198 -5.2352 5.3672 20 6 1.6428 -6.0896 4.3266 21 6 2.3224 -7.1581 3.7724 22 6 1.6904 -7.9380 2.8164 23 6 0.3924 -7.6129 2.4522 24 6 -0.2237 -6.5304 3.0504 25 7 0.4071 -5.8125 3.9593 26 6 1.2511 -2.4992 2.4991 27 6 0.3715 -2.5802 1.2499 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 2.8719 -3.6044 -0.8895 31 1 1.7002 -4.6060 0.0010 32 1 3.6700 -2.6371 1.2497 33 1 3.8329 -4.4097 1.2500 34 1 1.7003 -4.6060 2.4990 35 1 4.8544 -2.4267 3.7294 36 1 3.4471 -1.6391 2.9622 37 1 4.2505 -1.1444 5.5789 38 1 2.5611 -0.9526 5.0113 39 1 3.8396 -3.3675 6.4159 40 1 2.2641 -2.5804 6.7642 41 1 3.3550 -5.5560 5.4833 42 1 1.7982 -5.3397 6.3186 43 1 3.3329 -7.3825 4.0804 44 1 2.1965 -8.7793 2.3664 45 1 -0.1306 -8.1988 1.7109 46 1 -1.2346 -6.2709 2.7726 47 1 0.6241 -2.5572 3.3888 48 1 1.7960 -1.5552 2.4991 49 1 -0.3372 -1.7520 1.2501 50 1 -0.1736 -3.5242 1.2499 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:35 Heat of formation + Delta-G solvation = 11.218475 kcal Electronic energy + Delta-G solvation = -28503.890974 eV Core-core repulsion = 25108.320958 eV Total energy + Delta-G solvation = -3395.570015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53575 -40.41872 -38.28824 -34.68530 -34.12801 -33.09482 -32.60186 -31.31555 -30.52312 -29.01287 -26.83987 -26.56626 -24.32661 -23.59440 -23.36961 -22.42431 -21.70219 -20.65886 -19.88176 -17.86594 -17.67365 -17.31266 -16.84722 -16.75417 -16.32492 -16.21628 -15.59896 -15.07981 -14.88271 -14.77087 -14.68379 -14.37963 -14.06819 -13.90936 -13.59124 -13.55416 -13.13953 -12.98798 -12.81268 -12.69454 -12.59239 -12.58553 -12.41337 -12.12803 -12.03961 -11.93725 -11.76225 -11.72194 -11.41634 -11.35260 -10.94914 -10.75223 -10.63571 -10.47049 -10.33804 -10.17676 -9.69633 -9.00560 -8.04234 -6.14713 0.34700 0.52718 1.38533 1.38747 1.45823 2.43072 3.00110 3.11234 3.23397 3.52933 3.76527 3.80879 4.06253 4.10519 4.13727 4.14668 4.24124 4.33679 4.38933 4.49354 4.50302 4.56678 4.66011 4.68069 4.73019 4.79890 4.85430 4.88737 4.91388 4.96395 4.96938 4.99602 5.05270 5.11070 5.14747 5.17050 5.18233 5.33904 5.39276 5.39483 5.41229 5.48720 5.50418 5.64910 5.68093 5.71524 5.91488 5.96077 6.18606 6.28291 6.35345 6.44619 6.94345 7.23708 7.50732 9.00308 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.005432 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.392384 B = 5153.272454 C = 6252.431119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.502 4.502 8 H 0.052 0.948 9 C 0.043 3.957 10 C -0.098 4.098 11 C -0.088 4.088 12 C 0.102 3.898 13 N -0.512 5.512 14 C 0.032 3.968 15 C -0.139 4.139 16 C -0.112 4.112 17 C 0.071 3.929 18 H 0.043 0.957 19 C -0.048 4.048 20 C 0.128 3.872 21 C -0.171 4.171 22 C -0.077 4.077 23 C -0.184 4.184 24 C 0.080 3.920 25 N -0.510 5.510 26 C -0.106 4.106 27 C -0.091 4.091 28 H 0.256 0.744 29 H -0.015 1.015 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.028 0.972 48 H 0.047 0.953 49 H 0.051 0.949 50 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.399 -14.205 11.998 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.136 4.136 11 C -0.126 4.126 12 C -0.006 4.006 13 N -0.235 5.235 14 C -0.096 4.096 15 C -0.177 4.177 16 C -0.150 4.150 17 C -0.038 4.038 18 H 0.061 0.939 19 C -0.086 4.086 20 C -0.009 4.009 21 C -0.190 4.190 22 C -0.103 4.103 23 C -0.204 4.204 24 C -0.076 4.076 25 N -0.220 5.220 26 C -0.145 4.145 27 C -0.129 4.129 28 H 0.065 0.935 29 H 0.003 0.997 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.169 0.831 44 H 0.176 0.824 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.208 -13.786 12.344 19.519 hybrid contribution -0.549 1.311 -1.037 1.760 sum 5.658 -12.476 11.307 17.762 Atomic orbital electron populations 1.70020 1.07129 1.26639 1.52185 1.25620 0.95411 1.01808 0.95489 0.85908 0.78616 0.80140 0.78854 1.19737 1.21434 1.19623 1.21303 0.92536 0.91314 1.48901 0.92997 1.18645 0.93022 0.93203 0.92719 1.21419 0.97711 0.97213 0.97255 1.21336 0.97162 1.00710 0.93368 1.21589 0.92119 0.97093 0.89836 1.63788 1.27655 1.30421 1.01612 1.22873 0.99537 0.89868 0.97308 1.22736 1.01402 0.97975 0.95612 1.22709 1.01105 0.94603 0.96543 1.22570 0.96087 0.95221 0.89908 0.93904 1.20556 1.00831 0.91794 0.95459 1.21438 0.89852 0.93574 0.96070 1.22202 1.01945 0.96346 0.98536 1.21911 0.94326 0.99095 0.94972 1.22337 0.96828 0.99208 1.02031 1.22921 1.00305 0.91942 0.92464 1.67445 1.10501 1.29509 1.14517 1.21736 0.97577 0.99189 0.96006 1.21218 0.98205 0.97547 0.95958 0.93460 0.99680 0.93473 0.94172 0.92943 0.92309 0.91038 0.90097 0.94135 0.89180 0.93610 0.88637 0.90134 0.88117 0.89016 0.83091 0.82391 0.83029 0.82984 0.95307 0.93482 0.93007 0.96856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 11.32 21.45 0.24 -54.24 16 2 C 0.01 0.82 5.30 84.66 0.45 1.26 16 3 Si 0.94 44.36 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.50 -27.56 6.61 25.60 0.17 -27.39 16 8 H 0.05 2.81 6.71 -2.92 -0.02 2.79 16 9 C 0.04 2.20 2.59 -11.54 -0.03 2.17 16 10 C -0.10 -4.22 5.41 30.60 0.17 -4.06 16 11 C -0.09 -3.45 4.91 30.60 0.15 -3.30 16 12 C 0.10 3.84 2.03 44.91 0.09 3.93 16 13 N -0.51 -16.11 4.71 -835.66 -3.94 -20.05 16 14 C 0.03 1.01 5.59 86.64 0.48 1.49 16 15 C -0.14 -3.68 6.94 31.77 0.22 -3.46 16 16 C -0.11 -2.49 6.49 31.97 0.21 -2.28 16 17 C 0.07 1.96 2.24 45.38 0.10 2.06 16 18 H 0.04 1.48 5.61 -2.39 -0.01 1.47 16 19 C -0.05 -1.10 5.35 29.85 0.16 -0.94 16 20 C 0.13 3.36 4.37 42.55 0.19 3.55 16 21 C -0.17 -3.76 9.71 22.36 0.22 -3.55 16 22 C -0.08 -1.56 10.18 22.47 0.23 -1.33 16 23 C -0.18 -4.08 10.11 22.36 0.23 -3.85 16 24 C 0.08 2.19 11.03 84.67 0.93 3.13 16 25 N -0.51 -15.54 8.80 -183.88 -1.62 -17.16 16 26 C -0.11 -4.73 4.42 30.59 0.14 -4.60 16 27 C -0.09 -4.55 5.23 30.59 0.16 -4.39 16 28 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 2.23 5.21 -2.39 -0.01 2.22 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.74 5.04 -2.39 -0.01 2.73 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.04 1.59 4.76 -2.39 -0.01 1.58 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.10 1.71 8.06 -2.38 -0.02 1.69 16 40 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.10 1.89 7.87 -2.39 -0.02 1.88 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.15 2.57 7.95 -2.91 -0.02 2.55 16 44 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 45 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 47 H 0.03 1.28 6.22 -2.39 -0.01 1.26 16 48 H 0.05 2.32 5.20 -2.39 -0.01 2.31 16 49 H 0.05 2.97 6.07 -2.38 -0.01 2.95 16 50 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -64.76 366.81 1.88 -62.88 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.91 Total: 23.73 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 4.26 Total: -41.55 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -5.31 Total: -91.45 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.76 1.88 -62.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.100 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds