Wall clock time and date at job start Tue Mar 31 2020 10:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48505 * 109.47252 * 269.99689 * 3 2 1 5 5 H 1.48501 * 109.47396 * 30.00287 * 3 2 1 6 6 H 1.48506 * 109.47006 * 150.00132 * 3 2 1 7 7 C 1.38809 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00168 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99767 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46759 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47067 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47224 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99619 * 90.00069 * 13 12 11 15 15 C 1.52997 * 109.47212 * 89.99960 * 14 13 12 16 16 C 1.54267 * 110.03373 * 292.90986 * 15 14 13 17 17 C 1.54968 * 104.16137 * 217.13581 * 16 15 14 18 18 C 1.54884 * 102.77441 * 37.88396 * 17 16 15 19 19 C 1.53874 * 110.03593 * 175.68906 * 15 14 13 20 20 C 1.34774 * 120.00119 * 269.99893 * 13 12 11 21 21 O 1.21270 * 120.00172 * 0.02562 * 20 13 12 22 22 C 1.50706 * 119.99638 * 180.02562 * 20 13 12 23 23 C 1.53002 * 109.46771 * 180.02562 * 22 20 13 24 24 C 1.53002 * 109.46815 * 179.97438 * 23 22 20 25 25 F 1.39903 * 109.46794 * 179.97438 * 24 23 22 26 26 H 0.96999 * 120.00350 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00082 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46636 * 60.00467 * 10 9 7 29 29 H 1.08993 * 109.47788 * 300.00207 * 10 9 7 30 30 H 1.09002 * 109.47165 * 60.00791 * 11 10 9 31 31 H 1.08997 * 109.47215 * 300.00087 * 11 10 9 32 32 H 1.09006 * 109.46834 * 59.99650 * 12 11 10 33 33 H 1.09003 * 109.46788 * 300.00337 * 12 11 10 34 34 H 1.09002 * 109.47068 * 210.00020 * 14 13 12 35 35 H 1.09001 * 109.47372 * 330.00108 * 14 13 12 36 36 H 1.09004 * 110.01939 * 54.29375 * 15 14 13 37 37 H 1.09001 * 110.48609 * 335.77840 * 16 15 14 38 38 H 1.08999 * 110.49311 * 98.42344 * 16 15 14 39 39 H 1.08997 * 110.72048 * 279.57487 * 17 16 15 40 40 H 1.08993 * 110.92252 * 156.29196 * 17 16 15 41 41 H 1.09009 * 110.48779 * 203.40596 * 18 17 16 42 42 H 1.09001 * 110.59973 * 80.82109 * 18 17 16 43 43 H 1.09003 * 110.03243 * 238.56963 * 19 15 14 44 44 H 1.08996 * 110.02723 * 359.95243 * 19 15 14 45 45 H 1.09004 * 109.46731 * 300.00166 * 22 20 13 46 46 H 1.08993 * 109.47109 * 60.00140 * 22 20 13 47 47 H 1.08996 * 109.47121 * 299.99656 * 23 22 20 48 48 H 1.08996 * 109.46958 * 60.00229 * 23 22 20 49 49 H 1.08996 * 109.47058 * 299.99772 * 24 23 22 50 50 H 1.09002 * 109.47076 * 59.99698 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 6 1.8289 -6.1447 -0.0037 13 7 0.8769 -7.2582 -0.0034 14 6 0.4004 -7.8148 -1.2721 15 6 1.3310 -8.9458 -1.7144 16 6 2.7194 -8.3778 -2.0742 17 6 3.1737 -9.2274 -3.2880 18 6 1.8574 -9.4239 -4.0804 19 6 0.7832 -9.6111 -2.9892 20 6 0.4396 -7.7706 1.1638 21 8 0.8337 -7.3097 2.2140 22 6 -0.5393 -8.9165 1.1640 23 6 -0.8707 -9.3039 2.6066 24 6 -1.8650 -10.4668 2.6067 25 9 -2.1675 -10.8215 3.9258 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0023 28 1 2.6847 -3.7152 0.8873 29 1 2.6848 -3.7138 -0.8927 30 1 0.4370 -4.7614 -0.8929 31 1 0.4376 -4.7625 0.8871 32 1 2.4557 -6.2028 0.8863 33 1 2.4556 -6.2021 -0.8937 34 1 -0.6090 -8.2048 -1.1415 35 1 0.3924 -7.0330 -2.0317 36 1 1.4248 -9.6846 -0.9184 37 1 2.6411 -7.3268 -2.3524 38 1 3.4104 -8.5022 -1.2405 39 1 3.5735 -10.1866 -2.9593 40 1 3.9083 -8.6891 -3.8868 41 1 1.9201 -10.3114 -4.7102 42 1 1.6383 -8.5434 -4.6843 43 1 0.6119 -10.6730 -2.8121 44 1 -0.1460 -9.1287 -3.2922 45 1 -1.4521 -8.6146 0.6503 46 1 -0.0988 -9.7708 0.6500 47 1 0.0419 -9.6057 3.1205 48 1 -1.3114 -8.4495 3.1201 49 1 -2.7775 -10.1647 2.0929 50 1 -1.4247 -11.3214 2.0929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177384606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:39 Heat of formation + Delta-G solvation = -110.449294 kcal Electronic energy + Delta-G solvation = -26709.488190 eV Core-core repulsion = 22877.873039 eV Total energy + Delta-G solvation = -3831.615151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.84467 -40.35265 -38.46318 -36.10550 -34.79267 -34.27785 -32.31939 -30.47188 -29.41981 -28.97935 -27.61359 -25.46759 -24.63977 -23.02005 -21.91845 -21.11813 -20.73473 -20.14204 -19.09350 -17.24933 -17.03048 -16.80925 -16.64985 -15.96277 -15.68724 -15.46592 -15.06433 -14.94963 -14.51775 -14.35632 -14.12246 -13.67961 -13.63441 -13.42089 -13.16939 -12.93105 -12.49041 -12.25740 -12.05610 -12.00029 -11.75743 -11.49524 -11.38726 -11.31517 -11.28841 -11.14029 -10.96739 -10.92990 -10.86897 -10.80631 -10.70749 -10.69058 -10.32393 -10.06205 -9.79346 -9.67040 -8.83737 -8.64889 -6.88352 -5.72912 -3.01530 2.58816 2.88348 3.45918 3.50774 3.52997 4.09280 4.25811 4.32759 4.38732 4.44036 4.46090 4.62847 4.68778 4.77866 4.86729 4.91185 5.01290 5.12110 5.14173 5.19288 5.23117 5.30803 5.37295 5.38732 5.43196 5.46618 5.56176 5.60215 5.61222 5.65899 5.68478 5.72799 5.82391 5.91479 5.96018 5.97684 6.04100 6.10295 6.11687 6.32882 6.41508 6.56624 6.89010 6.91592 7.34446 7.73026 8.15353 8.46080 9.56858 10.15582 10.50207 11.50211 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.003041 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.822572 B = 9204.765062 C =11549.292057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.116 3.884 13 N -0.608 5.608 14 C 0.112 3.888 15 C -0.111 4.111 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.118 4.118 20 C 0.511 3.489 21 O -0.533 6.533 22 C -0.138 4.138 23 C -0.140 4.140 24 C 0.063 3.937 25 F -0.218 7.218 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -27.415 -6.264 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.177 4.177 12 C -0.007 4.007 13 N -0.340 5.340 14 C -0.011 4.011 15 C -0.130 4.130 16 C -0.158 4.158 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.157 4.157 20 C 0.299 3.701 21 O -0.409 6.409 22 C -0.178 4.178 23 C -0.178 4.178 24 C 0.008 3.992 25 F -0.200 7.200 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.471 -27.044 -5.650 27.632 hybrid contribution 0.086 0.965 -0.118 0.976 sum -0.385 -26.079 -5.768 26.712 Atomic orbital electron populations 1.69666 1.05128 1.25598 1.57951 1.24751 0.95544 0.97715 1.03139 0.86173 0.78671 0.83801 0.77470 1.21746 1.21759 1.20736 1.19250 0.91047 0.84193 1.42448 0.91171 1.42354 1.05875 1.00027 1.89477 1.20533 0.93404 0.85487 0.97711 1.22052 0.99516 0.93850 1.02307 1.21582 0.91105 0.84779 1.03202 1.47979 1.45847 1.34558 1.05608 1.21813 0.97079 0.96246 0.85961 1.22266 0.95814 0.97216 0.97731 1.22525 0.95672 0.99800 0.97790 1.22514 0.97216 0.99893 0.96734 1.22355 0.94876 1.01601 0.97447 1.22149 0.98769 1.00402 0.94341 1.20522 0.82042 0.84003 0.83512 1.90742 1.57829 1.61444 1.30911 1.21603 0.99763 0.97846 0.98604 1.21929 1.00545 0.98884 0.96481 1.21997 0.99747 0.98246 0.79251 1.92776 1.94734 1.93424 1.39020 0.93551 0.78340 0.96269 0.96486 0.92103 0.91644 0.89923 0.90281 0.90359 0.89699 0.90914 0.90919 0.91660 0.91786 0.91563 0.91897 0.91454 0.91748 0.91405 0.88607 0.88766 0.89979 0.89772 0.90732 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.50 5.60 -59.91 -0.34 -19.83 16 10 C 0.16 3.29 6.26 -4.04 -0.03 3.26 16 11 C -0.14 -2.35 5.65 -26.73 -0.15 -2.50 16 12 C 0.12 1.55 5.09 -4.04 -0.02 1.53 16 13 N -0.61 -6.76 2.39 -173.68 -0.41 -7.17 16 14 C 0.11 0.88 4.36 -4.04 -0.02 0.86 16 15 C -0.11 -0.74 3.14 -89.50 -0.28 -1.02 16 16 C -0.12 -0.94 5.23 -25.03 -0.13 -1.07 16 17 C -0.13 -0.86 6.91 -24.70 -0.17 -1.03 16 18 C -0.13 -0.77 6.83 -25.08 -0.17 -0.94 16 19 C -0.12 -0.66 6.46 -25.61 -0.17 -0.83 16 20 C 0.51 6.33 7.67 -10.98 -0.08 6.24 16 21 O -0.53 -9.08 15.56 5.57 0.09 -8.99 16 22 C -0.14 -1.08 4.25 -27.88 -0.12 -1.20 16 23 C -0.14 -1.26 4.96 -26.73 -0.13 -1.39 16 24 C 0.06 0.44 7.55 37.16 0.28 0.72 16 25 F -0.22 -2.31 17.36 2.25 0.04 -2.27 16 26 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.38 10.70 7.67 -40.82 -0.31 10.38 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.08 0.92 5.65 -51.93 -0.29 0.62 16 34 H 0.08 0.47 6.44 -51.93 -0.33 0.13 16 35 H 0.08 0.70 7.95 -51.93 -0.41 0.29 16 36 H 0.07 0.49 7.35 -51.93 -0.38 0.11 16 37 H 0.07 0.63 6.22 -51.93 -0.32 0.31 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 45 H 0.10 0.58 7.40 -51.93 -0.38 0.20 16 46 H 0.09 0.52 7.30 -51.93 -0.38 0.14 16 47 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 48 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -34.62 395.82 -9.46 -44.07 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -9.07 Total: 3.64 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.44 Total: -5.00 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.03 Total: -55.32 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.62 -9.46 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177384606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.374 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds