Wall clock time and date at job start Tue Mar 31 2020 10:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48505 * 109.47252 * 269.99689 * 3 2 1 5 5 H 1.48501 * 109.47396 * 30.00287 * 3 2 1 6 6 H 1.48506 * 109.47006 * 150.00132 * 3 2 1 7 7 C 1.38809 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00168 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99767 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46759 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47067 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47224 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99619 * 90.00069 * 13 12 11 15 15 C 1.52997 * 109.47212 * 89.99960 * 14 13 12 16 16 C 1.54267 * 110.03373 * 292.90986 * 15 14 13 17 17 C 1.54968 * 104.16137 * 217.13581 * 16 15 14 18 18 C 1.54884 * 102.77441 * 37.88396 * 17 16 15 19 19 C 1.53874 * 110.03593 * 175.68906 * 15 14 13 20 20 C 1.34774 * 120.00119 * 269.99893 * 13 12 11 21 21 O 1.21270 * 120.00172 * 0.02562 * 20 13 12 22 22 C 1.50706 * 119.99638 * 180.02562 * 20 13 12 23 23 C 1.53002 * 109.46771 * 180.02562 * 22 20 13 24 24 C 1.53002 * 109.46815 * 179.97438 * 23 22 20 25 25 F 1.39903 * 109.46794 * 179.97438 * 24 23 22 26 26 H 0.96999 * 120.00350 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00082 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46636 * 60.00467 * 10 9 7 29 29 H 1.08993 * 109.47788 * 300.00207 * 10 9 7 30 30 H 1.09002 * 109.47165 * 60.00791 * 11 10 9 31 31 H 1.08997 * 109.47215 * 300.00087 * 11 10 9 32 32 H 1.09006 * 109.46834 * 59.99650 * 12 11 10 33 33 H 1.09003 * 109.46788 * 300.00337 * 12 11 10 34 34 H 1.09002 * 109.47068 * 210.00020 * 14 13 12 35 35 H 1.09001 * 109.47372 * 330.00108 * 14 13 12 36 36 H 1.09004 * 110.01939 * 54.29375 * 15 14 13 37 37 H 1.09001 * 110.48609 * 335.77840 * 16 15 14 38 38 H 1.08999 * 110.49311 * 98.42344 * 16 15 14 39 39 H 1.08997 * 110.72048 * 279.57487 * 17 16 15 40 40 H 1.08993 * 110.92252 * 156.29196 * 17 16 15 41 41 H 1.09009 * 110.48779 * 203.40596 * 18 17 16 42 42 H 1.09001 * 110.59973 * 80.82109 * 18 17 16 43 43 H 1.09003 * 110.03243 * 238.56963 * 19 15 14 44 44 H 1.08996 * 110.02723 * 359.95243 * 19 15 14 45 45 H 1.09004 * 109.46731 * 300.00166 * 22 20 13 46 46 H 1.08993 * 109.47109 * 60.00140 * 22 20 13 47 47 H 1.08996 * 109.47121 * 299.99656 * 23 22 20 48 48 H 1.08996 * 109.46958 * 60.00229 * 23 22 20 49 49 H 1.08996 * 109.47058 * 299.99772 * 24 23 22 50 50 H 1.09002 * 109.47076 * 59.99698 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 6 1.8289 -6.1447 -0.0037 13 7 0.8769 -7.2582 -0.0034 14 6 0.4004 -7.8148 -1.2721 15 6 1.3310 -8.9458 -1.7144 16 6 2.7194 -8.3778 -2.0742 17 6 3.1737 -9.2274 -3.2880 18 6 1.8574 -9.4239 -4.0804 19 6 0.7832 -9.6111 -2.9892 20 6 0.4396 -7.7706 1.1638 21 8 0.8337 -7.3097 2.2140 22 6 -0.5393 -8.9165 1.1640 23 6 -0.8707 -9.3039 2.6066 24 6 -1.8650 -10.4668 2.6067 25 9 -2.1675 -10.8215 3.9258 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0023 28 1 2.6847 -3.7152 0.8873 29 1 2.6848 -3.7138 -0.8927 30 1 0.4370 -4.7614 -0.8929 31 1 0.4376 -4.7625 0.8871 32 1 2.4557 -6.2028 0.8863 33 1 2.4556 -6.2021 -0.8937 34 1 -0.6090 -8.2048 -1.1415 35 1 0.3924 -7.0330 -2.0317 36 1 1.4248 -9.6846 -0.9184 37 1 2.6411 -7.3268 -2.3524 38 1 3.4104 -8.5022 -1.2405 39 1 3.5735 -10.1866 -2.9593 40 1 3.9083 -8.6891 -3.8868 41 1 1.9201 -10.3114 -4.7102 42 1 1.6383 -8.5434 -4.6843 43 1 0.6119 -10.6730 -2.8121 44 1 -0.1460 -9.1287 -3.2922 45 1 -1.4521 -8.6146 0.6503 46 1 -0.0988 -9.7708 0.6500 47 1 0.0419 -9.6057 3.1205 48 1 -1.3114 -8.4495 3.1201 49 1 -2.7775 -10.1647 2.0929 50 1 -1.4247 -11.3214 2.0929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177384606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:38 Heat of formation + Delta-G solvation = -130.778460 kcal Electronic energy + Delta-G solvation = -26710.369729 eV Core-core repulsion = 22877.873039 eV Total energy + Delta-G solvation = -3832.496689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.53420 -41.25785 -39.12272 -37.47906 -36.24118 -35.09643 -34.03159 -31.91823 -30.43156 -29.51091 -28.56454 -26.77973 -25.57748 -24.57488 -22.95338 -22.36449 -21.48076 -20.69408 -19.95137 -19.16885 -18.10036 -17.60690 -17.39374 -16.68874 -16.59095 -16.42312 -16.14328 -16.04679 -15.67830 -15.45506 -15.38005 -15.08461 -14.69548 -14.38419 -14.25379 -13.98684 -13.55957 -13.45367 -13.13110 -12.85218 -12.80660 -12.75750 -12.46400 -12.41365 -12.17724 -12.09541 -11.97837 -11.90651 -11.86424 -11.82209 -11.74709 -11.63907 -11.53372 -11.39129 -11.19901 -10.97165 -10.80360 -9.62885 -9.05524 -7.98527 -5.28796 1.45034 1.47834 1.56396 1.64968 1.99430 2.54007 3.34732 3.39978 3.71915 3.75331 3.76690 3.84125 3.87680 3.91247 4.00447 4.16273 4.23797 4.28857 4.31751 4.39795 4.44250 4.52459 4.59095 4.60709 4.63557 4.68328 4.70066 4.76519 4.81367 4.86204 4.91295 4.95189 4.99138 5.02632 5.11041 5.16561 5.26456 5.27345 5.28725 5.33911 5.40473 5.45328 5.49539 5.56788 5.66650 6.23470 6.44837 7.21499 7.29045 8.03630 8.27684 9.25288 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.003041 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.822572 B = 9204.765062 C =11549.292057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.748 5.748 10 C 0.155 3.845 11 C -0.120 4.120 12 C 0.126 3.874 13 N -0.603 5.603 14 C 0.107 3.893 15 C -0.103 4.103 16 C -0.126 4.126 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.113 4.113 20 C 0.501 3.499 21 O -0.591 6.591 22 C -0.126 4.126 23 C -0.139 4.139 24 C 0.061 3.939 25 F -0.241 7.241 26 H 0.252 0.748 27 H 0.372 0.628 28 H 0.011 0.989 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.098 0.902 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 -29.314 -8.136 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.391 5.391 10 C 0.028 3.972 11 C -0.159 4.159 12 C 0.003 3.997 13 N -0.334 5.334 14 C -0.015 4.015 15 C -0.123 4.123 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.151 4.151 20 C 0.291 3.709 21 O -0.472 6.472 22 C -0.166 4.166 23 C -0.177 4.177 24 C 0.007 3.993 25 F -0.223 7.223 26 H 0.061 0.939 27 H 0.204 0.796 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.142 0.858 46 H 0.148 0.852 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.117 0.883 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.685 -28.995 -7.561 29.972 hybrid contribution 0.210 1.523 0.444 1.600 sum -0.475 -27.472 -7.117 28.383 Atomic orbital electron populations 1.69829 1.06722 1.26236 1.59334 1.25649 0.96499 1.01345 1.03415 0.85075 0.77602 0.79013 0.77670 1.20867 1.22041 1.19492 1.19672 0.91572 0.85365 1.41621 0.90587 1.42596 1.05615 1.01373 1.89525 1.20688 0.94034 0.84792 0.97656 1.21852 0.98520 0.94349 1.01177 1.21311 0.91142 0.84035 1.03229 1.48041 1.44994 1.33482 1.06889 1.22118 0.98751 0.96573 0.84044 1.22205 0.94672 0.96782 0.98612 1.22535 0.96487 0.99463 0.97840 1.22510 0.97694 0.99769 0.96365 1.22369 0.94564 1.01776 0.97676 1.22131 0.98705 1.01209 0.93057 1.21438 0.82039 0.84619 0.82764 1.90721 1.59976 1.63464 1.33027 1.21635 0.99656 0.96964 0.98314 1.21867 1.00128 0.98764 0.96969 1.22216 1.00377 0.98401 0.78301 1.92730 1.94896 1.93570 1.41078 0.93877 0.79606 0.97125 0.95016 0.91356 0.94432 0.92002 0.88129 0.87468 0.89909 0.90299 0.92033 0.92871 0.91383 0.92087 0.91064 0.91998 0.90313 0.90436 0.85785 0.85231 0.91997 0.92726 0.88334 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.25 13.06 21.65 0.28 -60.96 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -40.57 5.60 -343.45 -1.92 -42.49 16 10 C 0.16 6.60 6.26 86.38 0.54 7.14 16 11 C -0.12 -4.14 5.65 30.60 0.17 -3.97 16 12 C 0.13 3.39 5.09 86.38 0.44 3.83 16 13 N -0.60 -12.72 2.39 -821.79 -1.96 -14.68 16 14 C 0.11 1.35 4.36 86.38 0.38 1.73 16 15 C -0.10 -1.07 3.14 -10.07 -0.03 -1.10 16 16 C -0.13 -1.77 5.23 31.70 0.17 -1.60 16 17 C -0.13 -1.50 6.91 31.91 0.22 -1.28 16 18 C -0.13 -1.22 6.83 31.67 0.22 -1.01 16 19 C -0.11 -0.83 6.46 31.32 0.20 -0.63 16 20 C 0.50 12.10 7.67 87.66 0.67 12.77 16 21 O -0.59 -21.05 15.56 -3.00 -0.05 -21.09 16 22 C -0.13 -1.64 4.25 29.85 0.13 -1.51 16 23 C -0.14 -2.38 4.96 30.60 0.15 -2.23 16 24 C 0.06 0.71 7.55 71.98 0.54 1.25 16 25 F -0.24 -4.87 17.36 44.97 0.78 -4.09 16 26 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.37 21.40 7.67 -92.71 -0.71 20.69 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.94 7.42 -2.38 -0.02 1.92 16 33 H 0.10 2.26 5.65 -2.39 -0.01 2.25 16 34 H 0.11 0.79 6.44 -2.39 -0.02 0.77 16 35 H 0.08 1.14 7.95 -2.39 -0.02 1.13 16 36 H 0.08 0.77 7.35 -2.38 -0.02 0.75 16 37 H 0.06 0.99 6.22 -2.39 -0.01 0.98 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.08 0.46 7.67 -2.39 -0.02 0.44 16 45 H 0.12 0.97 7.40 -2.38 -0.02 0.96 16 46 H 0.13 0.82 7.30 -2.39 -0.02 0.80 16 47 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 48 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 49 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -78.13 395.82 4.46 -73.67 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.19 Total: 24.87 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.10 Total: -4.55 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -3.60 Total: -118.13 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -78.13 4.46 -73.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177384606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.107 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds