Wall clock time and date at job start Tue Mar 31 2020 11:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46897 * 239.99596 * 3 2 1 5 5 H 1.48495 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46904 * 120.00308 * 3 2 1 7 7 C 1.38811 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46851 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46632 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 14 18 18 O 1.21278 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99944 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.46980 * 60.00059 * 19 17 16 21 21 C 1.52996 * 109.46946 * 299.99948 * 19 17 16 22 22 C 1.53005 * 109.47245 * 179.97438 * 21 19 17 23 23 C 1.53000 * 109.46632 * 59.99973 * 22 21 19 24 24 C 1.52996 * 109.47518 * 300.00318 * 23 22 21 25 25 H 1.09000 * 109.47380 * 180.02562 * 24 23 22 26 26 F 1.39900 * 109.46755 * 299.99747 * 24 23 22 27 27 C 1.52997 * 109.47084 * 180.02562 * 19 17 16 28 28 H 0.97004 * 119.99817 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00167 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47271 * 60.00541 * 10 9 7 31 31 H 1.09002 * 109.47391 * 300.00323 * 10 9 7 32 32 H 1.09001 * 109.46630 * 60.00157 * 11 10 9 33 33 H 1.08992 * 109.47290 * 300.00402 * 11 10 9 34 34 H 1.08992 * 109.46876 * 60.00481 * 12 11 10 35 35 H 1.09001 * 109.46735 * 300.00028 * 12 11 10 36 36 H 1.09001 * 109.46741 * 60.00169 * 13 12 11 37 37 H 1.09002 * 109.47398 * 300.00272 * 13 12 11 38 38 H 1.09001 * 109.46652 * 60.00345 * 14 13 12 39 39 H 1.08992 * 109.47514 * 300.00434 * 14 13 12 40 40 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 41 41 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 42 42 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 43 43 H 1.09001 * 109.47372 * 299.99872 * 21 19 17 44 44 H 1.09004 * 109.47108 * 60.00127 * 21 19 17 45 45 H 1.09001 * 109.46962 * 300.00283 * 22 21 19 46 46 H 1.08992 * 109.47457 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.46968 * 180.02562 * 23 22 21 48 48 H 1.09001 * 109.47194 * 60.00452 * 23 22 21 49 49 H 1.09002 * 109.47045 * 299.99967 * 27 19 17 50 50 H 1.09001 * 109.47375 * 60.00042 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8198 0.0012 12 6 1.8287 -6.1448 0.0018 13 6 0.8343 -7.3077 0.0018 14 6 1.5993 -8.6327 0.0018 15 6 0.6050 -9.7956 0.0012 16 7 1.3375 -11.0643 0.0018 17 6 0.6635 -12.2315 0.0009 18 8 -0.5493 -12.2315 0.0000 19 6 1.4170 -13.5367 0.0021 20 1 2.0423 -13.5943 0.8930 21 6 2.2984 -13.6178 -1.2458 22 6 3.0639 -14.9426 -1.2443 23 6 2.0700 -16.1058 -1.2454 24 6 1.1885 -16.0246 0.0024 25 1 0.4807 -16.8536 0.0019 26 9 1.9912 -16.0982 1.1459 27 6 0.4227 -14.6995 0.0000 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6845 -3.7146 0.8906 31 1 2.6847 -3.7146 -0.8894 32 1 0.4367 -4.7621 -0.8886 33 1 0.4373 -4.7618 0.8913 34 1 2.4552 -6.2021 0.8918 35 1 2.4553 -6.2029 -0.8882 36 1 0.2080 -7.2501 -0.8884 37 1 0.2073 -7.2497 0.8916 38 1 2.2259 -8.6904 0.8919 39 1 2.2260 -8.6905 -0.8880 40 1 -0.0221 -9.7380 0.8909 41 1 -0.0213 -9.7377 -0.8891 42 1 2.3075 -11.0644 0.0029 43 1 1.6731 -13.5601 -2.1368 44 1 3.0068 -12.7893 -1.2448 45 1 3.6893 -14.9998 -0.3534 46 1 3.6922 -15.0002 -2.1331 47 1 2.6153 -17.0496 -1.2439 48 1 1.4447 -16.0485 -2.1364 49 1 -0.2056 -14.6419 0.8889 50 1 -0.2023 -14.6417 -0.8911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178464191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:17 Heat of formation + Delta-G solvation = -128.762705 kcal Electronic energy + Delta-G solvation = -25097.060097 eV Core-core repulsion = 21264.650817 eV Total energy + Delta-G solvation = -3832.409280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.11390 -40.44558 -37.73476 -36.77110 -35.42152 -33.97342 -32.18281 -31.53452 -30.95958 -29.84019 -27.02405 -24.69814 -23.62319 -23.21653 -22.21307 -21.35686 -20.68276 -20.64640 -20.00393 -17.87157 -16.96818 -16.73063 -16.27088 -15.97160 -15.95154 -15.62426 -15.41245 -15.01739 -14.64410 -14.42108 -14.06551 -13.65177 -13.48120 -13.40386 -13.21559 -12.95334 -12.78153 -12.75251 -12.50082 -12.34642 -12.10075 -11.74105 -11.65301 -11.38512 -11.36391 -11.18314 -10.96867 -10.90952 -10.72213 -10.71792 -10.66179 -10.43613 -10.25526 -10.06567 -9.92544 -9.62365 -9.39087 -8.83057 -6.87850 -5.72899 -3.01378 2.29892 2.79946 3.46167 3.49960 3.51563 3.88213 3.95400 4.08039 4.24661 4.41668 4.46256 4.53209 4.63390 4.66873 4.71124 4.74474 4.77692 4.90693 4.97602 4.98620 5.22851 5.31175 5.36003 5.37910 5.39575 5.41895 5.50283 5.56471 5.56703 5.64146 5.65435 5.70032 5.73875 5.80488 5.94481 5.96273 6.11670 6.13851 6.34367 6.34994 6.42571 6.49445 6.92743 6.96805 7.13574 7.72295 7.87971 8.46467 9.56965 10.16712 10.51272 11.50140 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.046214 B = 0.001392 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.728121 B =20109.937913 C =20402.500841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.130 4.130 15 C 0.116 3.884 16 N -0.729 5.729 17 C 0.516 3.484 18 O -0.540 6.540 19 C -0.108 4.108 20 H 0.103 0.897 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.148 4.148 24 C 0.091 3.909 25 H 0.086 0.914 26 F -0.213 7.213 27 C -0.126 4.126 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -36.916 -2.266 37.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.168 4.168 15 C -0.007 4.007 16 N -0.381 5.381 17 C 0.302 3.698 18 O -0.416 6.416 19 C -0.129 4.129 20 H 0.121 0.879 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.186 4.186 24 C 0.055 3.945 25 H 0.104 0.896 26 F -0.194 7.194 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.235 0.765 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.493 -36.770 -2.239 37.112 hybrid contribution 0.664 1.027 0.090 1.226 sum 5.157 -35.744 -2.149 36.178 Atomic orbital electron populations 1.69657 1.05121 1.25708 1.57865 1.24751 0.95541 0.97702 1.03132 0.86249 0.78499 0.83513 0.77827 1.21292 1.21660 1.21281 1.19218 0.91021 0.84314 1.42603 0.91275 1.42387 1.05901 1.00146 1.89479 1.20658 0.93655 0.85723 0.97514 1.21732 0.98891 0.93844 1.01998 1.21498 0.97862 0.93874 1.01883 1.21519 0.98428 0.92860 1.02629 1.21826 0.98236 0.94047 1.02728 1.21460 0.94949 0.81713 1.02576 1.46074 1.10456 1.05975 1.75606 1.20584 0.88098 0.85384 0.75685 1.90716 1.14009 1.87717 1.49204 1.21310 0.97923 0.92419 1.01263 0.87903 1.21569 0.98242 0.98425 0.96757 1.21502 0.97764 0.93377 1.03069 1.22166 0.98761 0.99937 0.97720 1.21615 0.91560 0.98976 0.82373 0.89576 1.92802 1.76000 1.97616 1.52970 1.21950 0.97416 0.91811 1.05190 0.93499 0.78333 0.96603 0.96606 0.92093 0.92089 0.92099 0.92116 0.91643 0.91627 0.91285 0.91302 0.91377 0.91366 0.76536 0.91050 0.90999 0.91000 0.90910 0.90605 0.89931 0.89944 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.74 -19.47 5.60 -59.90 -0.34 -19.80 16 10 C 0.15 3.17 6.26 -4.04 -0.03 3.14 16 11 C -0.13 -2.07 5.33 -26.72 -0.14 -2.21 16 12 C -0.11 -1.38 5.21 -26.73 -0.14 -1.52 16 13 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 14 C -0.13 -1.02 5.33 -26.73 -0.14 -1.16 16 15 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 16 N -0.73 -5.40 5.45 -60.29 -0.33 -5.72 16 17 C 0.52 4.72 7.15 -10.98 -0.08 4.64 16 18 O -0.54 -7.16 15.98 5.56 0.09 -7.07 16 19 C -0.11 -0.68 2.40 -91.77 -0.22 -0.90 16 20 H 0.10 0.61 7.80 -51.93 -0.41 0.21 16 21 C -0.11 -0.51 5.10 -26.73 -0.14 -0.64 16 22 C -0.12 -0.48 5.80 -26.73 -0.16 -0.63 16 23 C -0.15 -0.58 5.72 -26.73 -0.15 -0.73 16 24 C 0.09 0.48 4.13 -26.71 -0.11 0.37 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 F -0.21 -1.63 16.04 2.25 0.04 -1.60 16 27 C -0.13 -0.81 4.29 -26.71 -0.11 -0.93 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.40 1.91 7.89 -40.82 -0.32 1.59 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.25 7.56 -51.93 -0.39 -0.14 16 45 H 0.07 0.33 7.80 -51.93 -0.41 -0.08 16 46 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 50 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -34.21 399.59 -10.06 -44.27 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -9.41 Total: 2.92 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.83 Total: -8.57 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.06 Total: -53.74 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.21 -10.06 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178464191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.495 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds