Wall clock time and date at job start Tue Mar 31 2020 11:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46897 * 239.99596 * 3 2 1 5 5 H 1.48495 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46904 * 120.00308 * 3 2 1 7 7 C 1.38811 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46851 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46632 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 14 18 18 O 1.21278 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99944 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.46980 * 60.00059 * 19 17 16 21 21 C 1.52996 * 109.46946 * 299.99948 * 19 17 16 22 22 C 1.53005 * 109.47245 * 179.97438 * 21 19 17 23 23 C 1.53000 * 109.46632 * 59.99973 * 22 21 19 24 24 C 1.52996 * 109.47518 * 300.00318 * 23 22 21 25 25 H 1.09000 * 109.47380 * 180.02562 * 24 23 22 26 26 F 1.39900 * 109.46755 * 299.99747 * 24 23 22 27 27 C 1.52997 * 109.47084 * 180.02562 * 19 17 16 28 28 H 0.97004 * 119.99817 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00167 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47271 * 60.00541 * 10 9 7 31 31 H 1.09002 * 109.47391 * 300.00323 * 10 9 7 32 32 H 1.09001 * 109.46630 * 60.00157 * 11 10 9 33 33 H 1.08992 * 109.47290 * 300.00402 * 11 10 9 34 34 H 1.08992 * 109.46876 * 60.00481 * 12 11 10 35 35 H 1.09001 * 109.46735 * 300.00028 * 12 11 10 36 36 H 1.09001 * 109.46741 * 60.00169 * 13 12 11 37 37 H 1.09002 * 109.47398 * 300.00272 * 13 12 11 38 38 H 1.09001 * 109.46652 * 60.00345 * 14 13 12 39 39 H 1.08992 * 109.47514 * 300.00434 * 14 13 12 40 40 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 41 41 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 42 42 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 43 43 H 1.09001 * 109.47372 * 299.99872 * 21 19 17 44 44 H 1.09004 * 109.47108 * 60.00127 * 21 19 17 45 45 H 1.09001 * 109.46962 * 300.00283 * 22 21 19 46 46 H 1.08992 * 109.47457 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.46968 * 180.02562 * 23 22 21 48 48 H 1.09001 * 109.47194 * 60.00452 * 23 22 21 49 49 H 1.09002 * 109.47045 * 299.99967 * 27 19 17 50 50 H 1.09001 * 109.47375 * 60.00042 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8198 0.0012 12 6 1.8287 -6.1448 0.0018 13 6 0.8343 -7.3077 0.0018 14 6 1.5993 -8.6327 0.0018 15 6 0.6050 -9.7956 0.0012 16 7 1.3375 -11.0643 0.0018 17 6 0.6635 -12.2315 0.0009 18 8 -0.5493 -12.2315 0.0000 19 6 1.4170 -13.5367 0.0021 20 1 2.0423 -13.5943 0.8930 21 6 2.2984 -13.6178 -1.2458 22 6 3.0639 -14.9426 -1.2443 23 6 2.0700 -16.1058 -1.2454 24 6 1.1885 -16.0246 0.0024 25 1 0.4807 -16.8536 0.0019 26 9 1.9912 -16.0982 1.1459 27 6 0.4227 -14.6995 0.0000 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6845 -3.7146 0.8906 31 1 2.6847 -3.7146 -0.8894 32 1 0.4367 -4.7621 -0.8886 33 1 0.4373 -4.7618 0.8913 34 1 2.4552 -6.2021 0.8918 35 1 2.4553 -6.2029 -0.8882 36 1 0.2080 -7.2501 -0.8884 37 1 0.2073 -7.2497 0.8916 38 1 2.2259 -8.6904 0.8919 39 1 2.2260 -8.6905 -0.8880 40 1 -0.0221 -9.7380 0.8909 41 1 -0.0213 -9.7377 -0.8891 42 1 2.3075 -11.0644 0.0029 43 1 1.6731 -13.5601 -2.1368 44 1 3.0068 -12.7893 -1.2448 45 1 3.6893 -14.9998 -0.3534 46 1 3.6922 -15.0002 -2.1331 47 1 2.6153 -17.0496 -1.2439 48 1 1.4447 -16.0485 -2.1364 49 1 -0.2056 -14.6419 0.8889 50 1 -0.2023 -14.6417 -0.8911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178464191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:16 Heat of formation + Delta-G solvation = -149.612373 kcal Electronic energy + Delta-G solvation = -25097.964207 eV Core-core repulsion = 21264.650817 eV Total energy + Delta-G solvation = -3833.313389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.62191 -41.12857 -38.27352 -37.79737 -36.74109 -35.32576 -33.56717 -32.31612 -31.58605 -31.05696 -28.29830 -25.97716 -24.69282 -23.69975 -23.36400 -22.21919 -22.01301 -21.30461 -20.52517 -19.12328 -18.43110 -17.34724 -17.06413 -16.73207 -16.56592 -16.40895 -16.25422 -16.04380 -15.66981 -15.38372 -15.23996 -15.22115 -14.65692 -14.35683 -13.92792 -13.87984 -13.61723 -13.43285 -13.28731 -13.07561 -12.94055 -12.91904 -12.63098 -12.51509 -12.40073 -12.20982 -12.11485 -12.01225 -11.81496 -11.80393 -11.76077 -11.47323 -11.40829 -11.35043 -11.03999 -10.92821 -10.69513 -10.11476 -9.01947 -7.96468 -5.26273 1.46512 1.50460 1.56805 1.58720 2.16062 2.55729 3.36765 3.43041 3.54094 3.66058 3.72358 3.84856 3.95186 4.00701 4.02126 4.07665 4.23843 4.24534 4.28790 4.31090 4.35306 4.39629 4.51145 4.58835 4.63229 4.64065 4.77950 4.85553 4.95258 4.97381 4.98542 5.04582 5.06183 5.07079 5.09121 5.15061 5.20389 5.26487 5.28427 5.35020 5.43363 5.46211 5.47769 5.53201 5.56089 6.25945 6.52523 7.22083 7.31348 8.08564 8.31463 9.27099 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.046214 B = 0.001392 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.728121 B =20109.937913 C =20402.500841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.076 0.924 9 N -0.751 5.751 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.119 3.881 16 N -0.717 5.717 17 C 0.513 3.487 18 O -0.587 6.587 19 C -0.101 4.101 20 H 0.108 0.892 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.147 4.147 24 C 0.089 3.911 25 H 0.100 0.900 26 F -0.227 7.227 27 C -0.126 4.126 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.416 0.584 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.063 0.937 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -37.937 -2.819 38.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.022 3.978 11 C -0.155 4.155 12 C -0.141 4.141 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.005 4.005 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.467 6.467 19 C -0.123 4.123 20 H 0.126 0.874 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.184 4.184 24 C 0.053 3.947 25 H 0.118 0.882 26 F -0.208 7.208 27 C -0.164 4.164 28 H 0.061 0.939 29 H 0.204 0.796 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.253 0.747 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.810 -37.822 -2.792 38.532 hybrid contribution -0.038 1.306 0.273 1.334 sum 6.772 -36.517 -2.519 37.225 Atomic orbital electron populations 1.69827 1.06740 1.26256 1.59341 1.25650 0.96478 1.01360 1.03468 0.85143 0.77179 0.78730 0.78299 1.20207 1.21969 1.20229 1.19669 0.91605 0.85543 1.41667 0.90595 1.42662 1.05681 1.01553 1.89506 1.20881 0.94427 0.85058 0.97465 1.21644 0.98095 0.94423 1.01348 1.21415 0.97916 0.92037 1.02751 1.21453 0.98087 0.93276 1.02360 1.21687 0.97727 0.92036 1.04017 1.21334 0.95138 0.82631 1.01357 1.45973 1.11237 1.05191 1.74509 1.21117 0.87669 0.86560 0.74637 1.90694 1.16135 1.88399 1.51505 1.21306 0.97781 0.90602 1.02574 0.87364 1.21577 0.98100 0.99522 0.95380 1.21505 0.97703 0.92839 1.03491 1.22186 0.98724 1.00380 0.97150 1.21756 0.91888 0.98556 0.82474 0.88245 1.92773 1.76415 1.97631 1.53974 1.21923 0.97469 0.92856 1.04137 0.93936 0.79599 0.96311 0.96241 0.92736 0.92822 0.91276 0.91157 0.91941 0.92094 0.90094 0.89838 0.92859 0.92533 0.74703 0.91338 0.89536 0.91460 0.89550 0.89822 0.88919 0.91842 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.75 -40.04 5.60 -343.44 -1.92 -41.96 16 10 C 0.15 6.06 6.26 86.38 0.54 6.60 16 11 C -0.12 -3.74 5.33 30.60 0.16 -3.58 16 12 C -0.10 -2.31 5.21 30.60 0.16 -2.15 16 13 C -0.11 -2.10 5.21 30.59 0.16 -1.94 16 14 C -0.12 -1.55 5.33 30.59 0.16 -1.39 16 15 C 0.12 1.95 5.67 86.38 0.49 2.44 16 16 N -0.72 -9.66 5.45 -463.05 -2.52 -12.19 16 17 C 0.51 9.20 7.15 87.66 0.63 9.83 16 18 O -0.59 -16.03 15.98 -3.02 -0.05 -16.08 16 19 C -0.10 -1.19 2.40 -11.54 -0.03 -1.22 16 20 H 0.11 1.17 7.80 -2.39 -0.02 1.16 16 21 C -0.11 -0.77 5.10 30.59 0.16 -0.61 16 22 C -0.12 -0.68 5.80 30.60 0.18 -0.50 16 23 C -0.15 -0.87 5.72 30.59 0.17 -0.69 16 24 C 0.09 0.85 4.13 30.61 0.13 0.98 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 F -0.23 -3.30 16.04 44.97 0.72 -2.57 16 27 C -0.13 -1.61 4.29 30.61 0.13 -1.48 16 28 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 29 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.42 2.97 7.89 -92.71 -0.73 2.24 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.09 0.37 7.56 -2.38 -0.02 0.35 16 45 H 0.07 0.47 7.80 -2.39 -0.02 0.46 16 46 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 50 H 0.09 1.14 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -74.10 399.59 2.34 -71.75 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.54 Total: 24.50 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.35 Total: -11.63 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.16 Total: -114.73 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.05 Total: -16.08 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.72 Total: -2.57 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.10 2.34 -71.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178464191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.861 kcal (2) G-P(sol) polarization free energy of solvation -74.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds