Wall clock time and date at job start Tue Mar 31 2020 11:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00181 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99989 * 3 2 1 5 5 H 1.48496 * 109.47166 * 30.00088 * 3 2 1 6 6 H 1.48499 * 109.47218 * 149.99919 * 3 2 1 7 7 C 1.38815 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00100 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00076 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00313 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47241 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46927 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46807 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46808 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46929 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47237 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99969 * 179.72043 * 16 15 14 18 18 O 1.21281 * 120.00220 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46779 * 300.00319 * 19 17 16 21 21 C 1.53006 * 109.46906 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.46730 * 59.99986 * 21 20 19 23 23 F 1.39895 * 109.47033 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.47376 * 300.00213 * 22 21 20 25 25 C 1.52992 * 109.47274 * 180.02562 * 19 17 16 26 26 H 0.97000 * 119.99486 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99881 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.47001 * 59.99782 * 10 9 7 29 29 H 1.08994 * 109.47269 * 300.00188 * 10 9 7 30 30 H 1.08996 * 109.46904 * 60.00699 * 11 10 9 31 31 H 1.08994 * 109.47339 * 300.00386 * 11 10 9 32 32 H 1.08996 * 109.46626 * 60.00690 * 12 11 10 33 33 H 1.08994 * 109.47559 * 300.00413 * 12 11 10 34 34 H 1.09000 * 109.46719 * 60.00443 * 13 12 11 35 35 H 1.08994 * 109.47402 * 300.00513 * 13 12 11 36 36 H 1.09000 * 109.47441 * 60.00491 * 14 13 12 37 37 H 1.09002 * 109.47087 * 299.99937 * 14 13 12 38 38 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 39 39 H 1.08998 * 109.47454 * 300.00107 * 15 14 13 40 40 H 0.97005 * 119.99811 * 0.02562 * 16 15 14 41 41 H 1.08998 * 109.46924 * 59.99727 * 19 17 16 42 42 H 1.08993 * 109.47257 * 299.99745 * 20 19 17 43 43 H 1.09001 * 109.47281 * 60.00049 * 20 19 17 44 44 H 1.09001 * 109.47159 * 300.00428 * 21 20 19 45 45 H 1.08991 * 109.47132 * 179.97438 * 21 20 19 46 46 H 1.09001 * 109.46939 * 60.00307 * 22 21 20 47 47 H 1.09010 * 109.46564 * 299.99834 * 24 22 21 48 48 H 1.09004 * 109.46974 * 180.02562 * 24 22 21 49 49 H 1.09004 * 109.47116 * 299.99649 * 25 19 17 50 50 H 1.08993 * 109.47352 * 59.99893 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1915 0.0000 12 6 6.3813 -3.5166 0.0006 13 6 7.8856 -3.2370 0.0000 14 6 8.6505 -4.5621 0.0000 15 6 10.1547 -4.2825 0.0000 16 7 10.8872 -5.5513 0.0006 17 6 12.2349 -5.5513 -0.0050 18 8 12.8414 -4.5011 -0.0100 19 6 12.9885 -6.8565 -0.0049 20 6 12.6239 -7.6557 1.2478 21 6 13.3885 -8.9811 1.2476 22 6 14.8928 -8.7020 1.2404 23 9 15.5919 -9.9137 1.2408 24 6 15.2573 -7.9026 -0.0122 25 6 14.4926 -6.5770 -0.0112 26 1 -0.4849 0.8401 -0.0004 27 1 3.8647 -0.3622 0.0004 28 1 3.8490 -3.0424 -0.8902 29 1 3.8484 -3.0428 0.8897 30 1 5.8796 -1.6200 0.8900 31 1 5.8797 -1.6199 -0.8899 32 1 6.1180 -4.0884 -0.8892 33 1 6.1178 -4.0878 0.8907 34 1 8.1491 -2.6649 0.8896 35 1 8.1487 -2.6660 -0.8903 36 1 8.3869 -5.1338 -0.8898 37 1 8.3875 -5.1334 0.8902 38 1 10.4182 -3.7110 0.8900 39 1 10.4181 -3.7110 -0.8899 40 1 10.4022 -6.3914 0.0006 41 1 12.7214 -7.4302 -0.8924 42 1 12.8909 -7.0821 2.1353 43 1 11.5523 -7.8549 1.2527 44 1 13.1211 -9.5546 0.3600 45 1 13.1291 -9.5503 2.1401 46 1 15.1601 -8.1285 2.1280 47 1 14.9899 -8.4763 -0.8998 48 1 16.3291 -7.7042 -0.0175 49 1 14.7526 -6.0074 -0.9035 50 1 14.7593 -6.0035 0.8765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179482334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:21 Heat of formation + Delta-G solvation = -126.632622 kcal Electronic energy + Delta-G solvation = -24957.618847 eV Core-core repulsion = 21125.301935 eV Total energy + Delta-G solvation = -3832.316912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.12262 -40.61323 -37.98502 -36.88938 -35.58180 -34.10601 -32.16638 -31.49347 -31.17719 -30.15264 -27.25551 -24.59711 -23.60013 -23.28086 -22.07246 -21.40060 -20.93545 -20.86126 -20.22016 -17.67116 -17.44588 -16.79545 -16.61160 -16.35484 -16.11253 -15.57695 -15.35111 -14.74325 -14.59261 -14.48588 -14.29503 -13.92123 -13.75549 -13.36294 -13.27180 -13.02166 -12.93879 -12.71149 -12.45566 -12.31810 -12.16135 -11.88237 -11.79713 -11.65431 -11.59479 -11.48282 -11.03634 -11.02464 -10.87962 -10.80579 -10.68144 -10.40785 -10.38786 -10.13109 -10.02788 -9.57418 -9.46852 -8.87522 -7.20857 -5.75609 -3.10682 2.21909 2.73040 3.38547 3.41596 3.46074 3.80849 3.84625 3.93638 4.22291 4.34670 4.39453 4.44759 4.54149 4.60618 4.63050 4.65975 4.74012 4.77775 4.85936 5.03018 5.12615 5.19244 5.23126 5.28942 5.31212 5.38755 5.44054 5.46981 5.47998 5.53393 5.56799 5.59062 5.62623 5.74512 5.78322 5.84463 6.00097 6.03564 6.10882 6.20067 6.22927 6.36698 6.78473 6.82632 7.06113 7.80773 8.01438 8.43867 9.23454 9.96082 10.16423 11.42971 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.042693 B = 0.001421 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.689021 B =19698.653033 C =20168.222260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.116 3.884 16 N -0.730 5.730 17 C 0.515 3.485 18 O -0.538 6.538 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.144 4.144 22 C 0.088 3.912 23 F -0.215 7.215 24 C -0.145 4.145 25 C -0.097 4.097 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.800 -20.065 1.127 38.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.169 4.169 15 C -0.007 4.007 16 N -0.382 5.382 17 C 0.301 3.699 18 O -0.414 6.414 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.181 4.181 22 C 0.052 3.948 23 F -0.196 7.196 24 C -0.183 4.183 25 C -0.135 4.135 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.235 0.765 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 33.009 -19.401 1.130 38.304 hybrid contribution 0.201 0.760 -0.027 0.787 sum 33.210 -18.640 1.103 38.099 Atomic orbital electron populations 1.69711 1.05104 1.25795 1.57754 1.24684 0.95267 0.97244 1.02101 0.86516 0.79195 0.84876 0.77778 1.21078 1.21705 1.20349 1.19094 0.80763 0.94754 1.42843 0.89271 1.42746 1.04067 1.02414 1.91178 1.20634 0.88912 0.89166 0.98389 1.21782 0.96265 0.96962 1.01859 1.21491 0.93489 0.98000 1.02161 1.21519 0.95283 0.96087 1.02575 1.21823 0.92922 0.99303 1.02811 1.21455 0.91201 0.85489 1.02563 1.46090 1.06435 1.10014 1.75648 1.20602 0.82289 0.91220 0.75770 1.90725 1.68150 1.33540 1.49034 1.21431 0.96683 0.94331 1.00751 1.21481 1.00696 0.95246 0.97213 1.22118 0.93777 0.98092 1.04147 1.21648 0.91307 0.81715 1.00140 1.92819 1.80911 1.47954 1.97933 1.22165 1.01609 0.96690 0.97845 1.21292 0.91643 0.96211 1.04364 0.93091 0.80719 0.95716 0.95764 0.92151 0.92130 0.91899 0.91897 0.91667 0.91665 0.91229 0.91232 0.91385 0.91388 0.76533 0.88130 0.90748 0.90475 0.90340 0.90184 0.89800 0.90557 0.90262 0.90243 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.81 13.97 55.49 0.78 -29.03 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.46 27.74 -169.99 -4.71 17.75 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 N -0.76 -18.62 5.41 -59.91 -0.32 -18.94 16 10 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 11 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 12 C -0.11 -1.25 5.22 -26.72 -0.14 -1.39 16 13 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 14 C -0.13 -0.89 5.33 -26.73 -0.14 -1.03 16 15 C 0.12 0.89 5.67 -4.04 -0.02 0.86 16 16 N -0.73 -4.58 5.45 -60.29 -0.33 -4.91 16 17 C 0.52 4.10 7.15 -10.98 -0.08 4.02 16 18 O -0.54 -6.62 15.98 5.56 0.09 -6.53 16 19 C -0.11 -0.53 2.53 -91.77 -0.23 -0.76 16 20 C -0.11 -0.37 5.10 -26.73 -0.14 -0.51 16 21 C -0.14 -0.51 5.66 -26.73 -0.15 -0.66 16 22 C 0.09 0.42 3.87 -26.73 -0.10 0.32 16 23 F -0.22 -1.62 17.08 2.25 0.04 -1.58 16 24 C -0.15 -0.64 5.66 -26.71 -0.15 -0.79 16 25 C -0.10 -0.52 4.49 -26.71 -0.12 -0.64 16 26 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 27 H 0.36 8.58 5.53 -40.82 -0.23 8.36 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 1.44 7.90 -40.82 -0.32 1.11 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.17 7.57 -51.93 -0.39 -0.22 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 50 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -34.93 398.08 -9.71 -44.64 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -9.41 Total: 0.72 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.84 Total: -8.12 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.12 Total: -52.88 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: 0.09 Total: -6.53 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.93 -9.71 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179482334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.990 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds