Wall clock time and date at job start Tue Mar 31 2020 11:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47234 * 2 1 4 4 C 1.53001 * 109.47416 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47112 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46629 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46742 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47213 * 54.99778 * 7 6 5 9 9 F 1.39904 * 109.47056 * 294.99779 * 7 6 5 10 10 C 1.50698 * 109.46980 * 175.00247 * 7 6 5 11 11 O 1.21278 * 120.00331 * 44.99684 * 10 7 6 12 12 N 1.34777 * 119.99670 * 224.99766 * 10 7 6 13 13 C 1.47422 * 125.65000 * 359.96024 * 12 10 7 14 14 C 1.54917 * 104.83237 * 204.16293 * 13 12 10 15 15 C 1.55155 * 101.58189 * 322.99082 * 14 13 12 16 16 H 1.09006 * 110.86995 * 277.07139 * 15 14 13 17 17 N 1.46490 * 110.72364 * 153.86509 * 15 14 13 18 18 C 1.36935 * 120.00121 * 91.47139 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.47023 * 125.64727 * 179.97438 * 12 10 7 27 27 H 1.09004 * 109.88663 * 298.32197 * 26 12 10 28 28 C 1.52997 * 110.01351 * 59.41639 * 26 12 10 29 29 H 1.09001 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47386 * 299.99962 * 1 2 3 31 31 H 1.09004 * 109.47234 * 60.00212 * 1 2 3 32 32 H 1.09005 * 109.46990 * 240.00004 * 2 1 3 33 33 H 1.08998 * 109.47057 * 120.00224 * 2 1 3 34 34 H 1.09005 * 109.47128 * 60.00089 * 3 2 1 35 35 H 1.08998 * 109.47282 * 300.00087 * 3 2 1 36 36 H 1.09005 * 109.46665 * 60.00092 * 4 3 2 37 37 H 1.08998 * 109.47201 * 300.00424 * 4 3 2 38 38 H 1.08998 * 109.47008 * 60.00151 * 5 4 3 39 39 H 1.08998 * 109.47481 * 300.00310 * 5 4 3 40 40 H 1.08994 * 109.47250 * 60.00645 * 6 5 4 41 41 H 1.08997 * 109.47237 * 299.99437 * 6 5 4 42 42 H 1.09003 * 110.36401 * 322.99515 * 13 12 10 43 43 H 1.08999 * 110.37131 * 85.21682 * 13 12 10 44 44 H 1.08996 * 111.00481 * 204.91038 * 14 13 12 45 45 H 1.09004 * 111.00233 * 81.06185 * 14 13 12 46 46 H 0.97000 * 120.00577 * 271.47738 * 17 15 14 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 48 48 H 1.08997 * 109.47535 * 177.88374 * 28 26 12 49 49 H 1.09004 * 109.47139 * 297.88630 * 28 26 12 50 50 H 1.09007 * 109.46978 * 57.87917 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8849 0.0000 7 6 6.1199 4.3275 0.0000 8 1 5.6853 4.8665 0.8418 9 9 5.7499 4.9529 -1.1955 10 6 7.6218 4.3292 0.1238 11 8 8.2863 3.5660 -0.5446 12 7 8.2266 5.1791 0.9773 13 6 7.5439 6.1558 1.8453 14 6 8.6051 7.2500 2.1222 15 6 9.9015 6.4051 2.2352 16 1 10.0063 5.9866 3.2362 17 7 11.0757 7.2082 1.8856 18 6 11.7566 7.8862 2.8612 19 1 11.4282 7.8286 3.8884 20 6 12.8690 8.6477 2.5300 21 7 13.2690 8.7184 1.2779 22 14 13.7982 9.5721 3.8610 23 1 13.2216 10.9321 4.0136 24 1 13.6821 8.8380 5.1466 25 1 15.2295 9.6812 3.4807 26 6 9.6764 5.2857 1.1969 27 1 10.0639 4.3415 1.5796 28 6 10.3796 5.6433 -0.1140 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9336 0.9285 -0.8892 37 1 3.9330 0.9287 0.8908 38 1 3.7162 3.3993 0.8895 39 1 3.7169 3.3983 -0.8904 40 1 5.9733 2.3708 -0.8898 41 1 5.9733 2.3716 0.8902 42 1 6.6832 6.5836 1.3311 43 1 7.2322 5.6830 2.7766 44 1 8.3951 7.7703 3.0566 45 1 8.6678 7.9525 1.2911 46 1 11.3710 7.2598 0.9631 47 1 12.7866 8.2381 0.5869 48 1 11.4485 5.7570 0.0663 49 1 10.2164 4.8489 -0.8423 50 1 9.9747 6.5788 -0.5001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179934213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:32 Heat of formation + Delta-G solvation = -98.674301 kcal Electronic energy + Delta-G solvation = -26609.678505 eV Core-core repulsion = 22778.573956 eV Total energy + Delta-G solvation = -3831.104548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.99390 -40.10942 -37.75758 -36.93510 -34.56847 -34.28426 -31.98858 -30.93700 -30.60820 -28.84836 -26.90183 -25.24692 -24.02104 -23.23685 -22.47307 -21.39747 -21.29782 -19.88581 -18.92312 -17.81960 -17.46182 -16.80873 -16.12765 -16.04548 -15.50655 -15.22956 -15.13251 -14.60492 -14.26454 -14.05823 -13.79841 -13.62672 -13.49916 -13.16727 -13.02512 -12.78777 -12.71629 -12.47870 -12.20018 -12.04425 -11.93183 -11.84299 -11.73869 -11.42520 -11.33937 -11.24069 -11.05262 -10.92329 -10.82314 -10.78663 -10.68763 -10.38648 -10.25287 -10.05419 -9.61100 -9.26089 -8.99966 -8.60327 -7.14717 -6.18098 -3.19968 2.41967 2.82177 3.47792 3.52241 3.66477 4.09351 4.18314 4.40672 4.45680 4.53521 4.60267 4.66004 4.69396 4.86217 4.90497 4.97013 5.07444 5.14716 5.19913 5.23526 5.34377 5.37279 5.44009 5.45557 5.47510 5.53594 5.57501 5.59598 5.65090 5.68799 5.75053 5.80406 5.86019 5.90071 5.91316 6.01074 6.04255 6.04868 6.14020 6.37805 6.42413 6.53199 6.61975 6.81972 7.51076 7.73025 8.04150 8.67318 9.11924 9.98443 10.12305 11.29527 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.002112 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.044122 B =13256.306565 C =13543.333519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.135 4.135 7 C 0.085 3.915 8 H 0.098 0.902 9 F -0.191 7.191 10 C 0.505 3.495 11 O -0.524 6.524 12 N -0.602 5.602 13 C 0.092 3.908 14 C -0.153 4.153 15 C 0.180 3.820 16 H 0.068 0.932 17 N -0.727 5.727 18 C -0.338 4.338 19 H 0.067 0.933 20 C -0.042 4.042 21 N -0.940 5.940 22 Si 1.084 2.916 23 H -0.295 1.295 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.124 3.876 27 H 0.074 0.926 28 C -0.159 4.159 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.374 0.626 47 H 0.255 0.745 48 H 0.077 0.923 49 H 0.062 0.938 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.309 -13.242 -0.036 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.173 4.173 7 C 0.045 3.955 8 H 0.116 0.884 9 F -0.172 7.172 10 C 0.290 3.710 11 O -0.400 6.400 12 N -0.336 5.336 13 C -0.031 4.031 14 C -0.194 4.194 15 C 0.068 3.932 16 H 0.086 0.914 17 N -0.371 5.371 18 C -0.469 4.469 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.585 5.585 22 Si 0.914 3.086 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.213 1.213 26 C 0.021 3.979 27 H 0.092 0.908 28 C -0.218 4.218 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.211 0.789 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.698 -12.677 0.048 25.130 hybrid contribution -1.364 -0.804 -0.554 1.677 sum -23.062 -13.482 -0.506 26.718 Atomic orbital electron populations 1.21782 0.95970 1.01532 1.01795 1.21544 0.95797 0.97019 1.02026 1.21628 0.95324 0.96731 1.02141 1.21586 0.95377 0.96355 1.02371 1.21604 0.93842 0.97569 1.02761 1.22059 0.96584 0.93613 1.05073 1.21634 0.92288 0.96049 0.85506 0.88370 1.92876 1.92018 1.83956 1.48309 1.20545 0.89896 0.80592 0.79952 1.90706 1.65998 1.39604 1.43704 1.48686 1.08538 1.36277 1.40060 1.22499 0.96600 0.90315 0.93722 1.23549 0.96083 0.97181 1.02594 1.21116 0.87434 0.89374 0.95305 0.91357 1.42645 1.30158 1.56233 1.08078 1.20081 1.10511 1.26237 0.90045 0.91536 1.25813 0.96763 0.99996 1.01403 1.70862 1.42518 1.45080 1.00023 0.83181 0.76382 0.75546 0.73445 1.22261 1.22093 1.21345 1.21956 0.78646 0.99969 0.97360 0.90790 1.22009 1.01432 1.01599 0.96716 0.92868 0.92780 0.92776 0.92055 0.92073 0.91994 0.91946 0.91761 0.91846 0.91632 0.91179 0.89411 0.89827 0.91128 0.91120 0.90246 0.90731 0.78853 0.93340 0.90462 0.91892 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.75 5.93 -26.74 -0.16 -0.90 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.82 5.21 -26.73 -0.14 -0.96 16 5 C -0.12 -0.92 5.13 -26.73 -0.14 -1.06 16 6 C -0.14 -1.32 4.69 -26.73 -0.13 -1.44 16 7 C 0.08 0.99 3.42 -27.88 -0.10 0.89 16 8 H 0.10 0.88 6.49 -51.93 -0.34 0.55 16 9 F -0.19 -2.60 16.75 2.25 0.04 -2.56 16 10 C 0.50 7.76 6.97 -10.99 -0.08 7.68 16 11 O -0.52 -9.80 15.51 5.56 0.09 -9.71 16 12 N -0.60 -9.12 3.08 -163.01 -0.50 -9.62 16 13 C 0.09 1.15 6.26 -2.53 -0.02 1.13 16 14 C -0.15 -2.43 6.77 -24.58 -0.17 -2.60 16 15 C 0.18 3.40 3.49 -66.10 -0.23 3.17 16 16 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 17 N -0.73 -17.36 4.93 -51.65 -0.25 -17.61 16 18 C -0.34 -9.09 9.96 -15.06 -0.15 -9.24 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.33 16 20 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 21 N -0.94 -28.50 13.70 55.49 0.76 -27.74 16 22 Si 1.08 25.28 29.92 -169.99 -5.09 20.19 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.12 2.18 3.47 -66.95 -0.23 1.95 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 28 C -0.16 -3.00 7.93 37.16 0.29 -2.70 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 40 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.75 7.25 -51.93 -0.38 0.38 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.37 9.27 3.89 -40.82 -0.16 9.11 16 47 H 0.26 7.64 6.77 -40.82 -0.28 7.37 16 48 H 0.08 1.55 6.77 -51.93 -0.35 1.20 16 49 H 0.06 1.19 6.77 -51.93 -0.35 0.84 16 50 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 LS Contribution 395.09 15.07 5.95 5.95 Total: -1.00 -31.76 395.09 -9.17 -40.93 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -9.07 Total: 6.88 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.10 Total: -6.72 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.00 Total: -54.97 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.09 Total: 20.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.76 -9.17 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179934213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.743 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds