Wall clock time and date at job start Tue Mar 31 2020 11:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47234 * 2 1 4 4 C 1.53001 * 109.47416 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47112 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46629 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46742 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47213 * 54.99778 * 7 6 5 9 9 F 1.39904 * 109.47056 * 294.99779 * 7 6 5 10 10 C 1.50698 * 109.46980 * 175.00247 * 7 6 5 11 11 O 1.21278 * 120.00331 * 44.99684 * 10 7 6 12 12 N 1.34777 * 119.99670 * 224.99766 * 10 7 6 13 13 C 1.47422 * 125.65000 * 359.96024 * 12 10 7 14 14 C 1.54917 * 104.83237 * 204.16293 * 13 12 10 15 15 C 1.55155 * 101.58189 * 322.99082 * 14 13 12 16 16 H 1.09006 * 110.86995 * 277.07139 * 15 14 13 17 17 N 1.46490 * 110.72364 * 153.86509 * 15 14 13 18 18 C 1.36935 * 120.00121 * 91.47139 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.47023 * 125.64727 * 179.97438 * 12 10 7 27 27 H 1.09004 * 109.88663 * 298.32197 * 26 12 10 28 28 C 1.52997 * 110.01351 * 59.41639 * 26 12 10 29 29 H 1.09001 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47386 * 299.99962 * 1 2 3 31 31 H 1.09004 * 109.47234 * 60.00212 * 1 2 3 32 32 H 1.09005 * 109.46990 * 240.00004 * 2 1 3 33 33 H 1.08998 * 109.47057 * 120.00224 * 2 1 3 34 34 H 1.09005 * 109.47128 * 60.00089 * 3 2 1 35 35 H 1.08998 * 109.47282 * 300.00087 * 3 2 1 36 36 H 1.09005 * 109.46665 * 60.00092 * 4 3 2 37 37 H 1.08998 * 109.47201 * 300.00424 * 4 3 2 38 38 H 1.08998 * 109.47008 * 60.00151 * 5 4 3 39 39 H 1.08998 * 109.47481 * 300.00310 * 5 4 3 40 40 H 1.08994 * 109.47250 * 60.00645 * 6 5 4 41 41 H 1.08997 * 109.47237 * 299.99437 * 6 5 4 42 42 H 1.09003 * 110.36401 * 322.99515 * 13 12 10 43 43 H 1.08999 * 110.37131 * 85.21682 * 13 12 10 44 44 H 1.08996 * 111.00481 * 204.91038 * 14 13 12 45 45 H 1.09004 * 111.00233 * 81.06185 * 14 13 12 46 46 H 0.97000 * 120.00577 * 271.47738 * 17 15 14 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 48 48 H 1.08997 * 109.47535 * 177.88374 * 28 26 12 49 49 H 1.09004 * 109.47139 * 297.88630 * 28 26 12 50 50 H 1.09007 * 109.46978 * 57.87917 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8849 0.0000 7 6 6.1199 4.3275 0.0000 8 1 5.6853 4.8665 0.8418 9 9 5.7499 4.9529 -1.1955 10 6 7.6218 4.3292 0.1238 11 8 8.2863 3.5660 -0.5446 12 7 8.2266 5.1791 0.9773 13 6 7.5439 6.1558 1.8453 14 6 8.6051 7.2500 2.1222 15 6 9.9015 6.4051 2.2352 16 1 10.0063 5.9866 3.2362 17 7 11.0757 7.2082 1.8856 18 6 11.7566 7.8862 2.8612 19 1 11.4282 7.8286 3.8884 20 6 12.8690 8.6477 2.5300 21 7 13.2690 8.7184 1.2779 22 14 13.7982 9.5721 3.8610 23 1 13.2216 10.9321 4.0136 24 1 13.6821 8.8380 5.1466 25 1 15.2295 9.6812 3.4807 26 6 9.6764 5.2857 1.1969 27 1 10.0639 4.3415 1.5796 28 6 10.3796 5.6433 -0.1140 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9336 0.9285 -0.8892 37 1 3.9330 0.9287 0.8908 38 1 3.7162 3.3993 0.8895 39 1 3.7169 3.3983 -0.8904 40 1 5.9733 2.3708 -0.8898 41 1 5.9733 2.3716 0.8902 42 1 6.6832 6.5836 1.3311 43 1 7.2322 5.6830 2.7766 44 1 8.3951 7.7703 3.0566 45 1 8.6678 7.9525 1.2911 46 1 11.3710 7.2598 0.9631 47 1 12.7866 8.2381 0.5869 48 1 11.4485 5.7570 0.0663 49 1 10.2164 4.8489 -0.8423 50 1 9.9747 6.5788 -0.5001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179934213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:31 Heat of formation + Delta-G solvation = -115.817897 kcal Electronic energy + Delta-G solvation = -26610.421907 eV Core-core repulsion = 22778.573956 eV Total energy + Delta-G solvation = -3831.847951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.99896 -41.40514 -39.11486 -37.51984 -36.31853 -34.95104 -33.60865 -32.29767 -31.52412 -30.37383 -27.71813 -26.75213 -25.52962 -24.57319 -23.51106 -22.00739 -21.86433 -21.19551 -20.21376 -19.56569 -18.80856 -17.80936 -17.18525 -16.95415 -16.83600 -16.59180 -16.31700 -15.66431 -15.35776 -15.17359 -15.08678 -14.74458 -14.50337 -14.23896 -14.09078 -13.98603 -13.80264 -13.47388 -13.42213 -13.27973 -13.08961 -12.90715 -12.64950 -12.64614 -12.46127 -12.30464 -12.06592 -11.99196 -11.84544 -11.79326 -11.70164 -11.59294 -11.40731 -11.32745 -11.27315 -10.92935 -10.80358 -9.86523 -9.14109 -8.38093 -5.33624 1.21993 1.59987 1.64461 1.71061 1.84597 2.72680 3.05993 3.37377 3.39520 3.55067 3.61088 3.66512 3.78019 3.78631 3.98636 4.03904 4.08068 4.17289 4.22266 4.25894 4.33227 4.39867 4.43208 4.48484 4.58658 4.62489 4.64678 4.71508 4.79459 4.89779 4.90142 4.94259 4.95945 5.04454 5.09321 5.12674 5.14509 5.16304 5.24711 5.27739 5.36664 5.39930 5.49648 5.54488 5.62411 6.31358 6.48915 6.82885 7.07445 7.97606 8.09475 9.13030 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.002112 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.044122 B =13256.306565 C =13543.333519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.131 4.131 7 C 0.090 3.910 8 H 0.138 0.862 9 F -0.202 7.202 10 C 0.498 3.502 11 O -0.566 6.566 12 N -0.601 5.601 13 C 0.097 3.903 14 C -0.145 4.145 15 C 0.171 3.829 16 H 0.073 0.927 17 N -0.744 5.744 18 C -0.328 4.328 19 H 0.075 0.925 20 C -0.106 4.106 21 N -0.978 5.978 22 Si 1.131 2.869 23 H -0.285 1.285 24 H -0.270 1.270 25 H -0.299 1.299 26 C 0.130 3.870 27 H 0.070 0.930 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.366 0.634 47 H 0.242 0.758 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.017 -13.413 2.105 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.169 4.169 7 C 0.051 3.949 8 H 0.155 0.845 9 F -0.183 7.183 10 C 0.286 3.714 11 O -0.444 6.444 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.186 4.186 15 C 0.061 3.939 16 H 0.091 0.909 17 N -0.387 5.387 18 C -0.459 4.459 19 H 0.093 0.907 20 C -0.297 4.297 21 N -0.626 5.626 22 Si 0.956 3.044 23 H -0.212 1.212 24 H -0.195 1.195 25 H -0.225 1.225 26 C 0.026 3.974 27 H 0.088 0.912 28 C -0.205 4.205 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.201 0.799 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.490 -12.870 2.220 27.755 hybrid contribution -0.564 -0.829 -1.234 1.590 sum -25.054 -13.699 0.986 28.571 Atomic orbital electron populations 1.21783 0.95581 1.01807 1.01922 1.21552 0.96166 0.96878 1.01921 1.21600 0.94727 0.96902 1.02315 1.21567 0.95856 0.95916 1.02216 1.21570 0.92039 0.98113 1.03376 1.22057 0.98021 0.92270 1.04587 1.21830 0.89244 0.97691 0.86125 0.84483 1.92859 1.91788 1.84262 1.49391 1.21344 0.91547 0.79648 0.78899 1.90690 1.67335 1.41265 1.45141 1.48737 1.07396 1.36779 1.40513 1.22705 0.95845 0.88673 0.95212 1.23357 0.95241 0.97450 1.02521 1.21343 0.87148 0.89751 0.95643 0.90906 1.42835 1.31749 1.56912 1.07237 1.20449 1.09826 1.24736 0.90889 0.90712 1.27193 0.98493 1.01680 1.02328 1.70978 1.43675 1.47014 1.00919 0.82576 0.74504 0.75175 0.72152 1.21184 1.19488 1.22543 1.21683 0.80598 0.99194 0.95957 0.91207 1.21845 1.00310 1.00822 0.97548 0.92570 0.92474 0.92822 0.92450 0.91933 0.91352 0.92199 0.92618 0.91386 0.89709 0.91810 0.91521 0.88839 0.88163 0.87398 0.88863 0.92906 0.79866 0.94786 0.92503 0.92446 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.31 5.93 30.59 0.18 -1.13 16 3 C -0.12 -1.23 5.21 30.59 0.16 -1.07 16 4 C -0.12 -1.39 5.21 30.59 0.16 -1.24 16 5 C -0.11 -1.44 5.13 30.59 0.16 -1.28 16 6 C -0.13 -2.28 4.69 30.60 0.14 -2.13 16 7 C 0.09 1.84 3.42 29.85 0.10 1.94 16 8 H 0.14 1.75 6.49 -2.39 -0.02 1.74 16 9 F -0.20 -5.09 16.75 44.97 0.75 -4.34 16 10 C 0.50 14.51 6.97 87.66 0.61 15.12 16 11 O -0.57 -21.14 15.51 -3.02 -0.05 -21.18 16 12 N -0.60 -16.95 3.08 -788.04 -2.43 -19.38 16 13 C 0.10 2.03 6.26 86.86 0.54 2.58 16 14 C -0.14 -4.27 6.77 31.99 0.22 -4.06 16 15 C 0.17 6.30 3.49 46.18 0.16 6.46 16 16 H 0.07 2.62 8.09 -2.38 -0.02 2.61 16 17 N -0.74 -35.87 4.93 -317.34 -1.56 -37.44 16 18 C -0.33 -17.57 9.96 84.03 0.84 -16.74 16 19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.11 -6.02 5.50 84.86 0.47 -5.55 16 21 N -0.98 -60.91 13.70 21.65 0.30 -60.61 16 22 Si 1.13 50.80 29.92 68.60 2.05 52.85 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 26 C 0.13 4.52 3.47 45.34 0.16 4.68 16 27 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 28 C -0.15 -5.72 7.93 71.98 0.57 -5.15 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.91 7.93 -2.39 -0.02 0.89 16 40 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.10 1.60 7.25 -2.39 -0.02 1.59 16 43 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.37 18.81 3.89 -92.71 -0.36 18.45 16 47 H 0.24 15.13 6.77 -92.71 -0.63 14.50 16 48 H 0.06 2.42 6.77 -2.39 -0.02 2.40 16 49 H 0.06 2.27 6.77 -2.38 -0.02 2.25 16 50 H 0.05 1.87 8.03 -2.38 -0.02 1.85 16 Total: -1.00 -70.85 395.09 4.92 -65.93 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.68 Total: 32.46 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.18 Total: -8.28 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -3.70 Total: -117.43 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.75 Total: -4.34 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -70.85 4.92 -65.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179934213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.889 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds