Wall clock time and date at job start Tue Mar 31 2020 11:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46886 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.46977 * 304.99148 * 7 6 5 9 9 F 1.39892 * 109.47256 * 64.99893 * 7 6 5 10 10 C 1.50703 * 109.46801 * 184.99548 * 7 6 5 11 11 O 1.21277 * 120.00423 * 314.99705 * 10 7 6 12 12 N 1.34783 * 119.99934 * 134.99790 * 10 7 6 13 13 C 1.47419 * 125.64779 * 359.69471 * 12 10 7 14 14 C 1.55124 * 104.72366 * 155.81801 * 13 12 10 15 15 C 1.55155 * 101.48842 * 37.29265 * 14 13 12 16 16 H 1.08999 * 110.72081 * 205.97517 * 15 14 13 17 17 N 1.46497 * 110.71779 * 82.69808 * 15 14 13 18 18 C 1.36934 * 120.00166 * 91.48304 * 17 15 14 19 19 H 1.07998 * 119.99876 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00351 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99412 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47482 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47242 * 119.99589 * 22 20 18 25 25 H 1.48493 * 109.47405 * 239.99565 * 22 20 18 26 26 C 1.47014 * 125.64911 * 179.97438 * 12 10 7 27 27 H 1.09003 * 109.88599 * 300.44087 * 26 12 10 28 28 C 1.52999 * 109.88574 * 61.60553 * 26 12 10 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 31 31 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 34 34 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 35 35 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 36 36 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 37 37 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 38 38 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 39 39 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 40 40 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 41 41 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 42 42 H 1.09003 * 110.36698 * 274.74798 * 13 12 10 43 43 H 1.08999 * 110.36829 * 37.06311 * 13 12 10 44 44 H 1.09010 * 111.19205 * 279.18517 * 14 13 12 45 45 H 1.09001 * 110.90864 * 155.27500 * 14 13 12 46 46 H 0.97002 * 119.99976 * 271.47177 * 17 15 14 47 47 H 0.96998 * 119.99338 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.47234 * 58.54386 * 28 26 12 49 49 H 1.08996 * 109.47889 * 178.54333 * 28 26 12 50 50 H 1.08999 * 109.47307 * 298.54848 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8849 0.0013 7 6 6.1200 4.3274 0.0026 8 1 5.6855 4.8670 -0.8388 9 9 5.7499 4.9518 1.1985 10 6 7.6219 4.3292 -0.1211 11 8 8.2864 3.5655 0.5467 12 7 8.2268 5.1797 -0.9740 13 6 7.5438 6.1522 -1.8464 14 6 8.6051 7.2501 -2.1196 15 6 9.9017 6.4054 -2.2321 16 1 10.7752 7.0032 -1.9721 17 7 10.0386 5.8429 -3.5779 18 6 10.7275 6.5309 -4.5407 19 1 11.1695 7.4885 -4.3082 20 6 10.8568 5.9982 -5.8161 21 7 10.3176 4.8314 -6.0996 22 14 11.7959 6.9371 -7.1297 23 1 12.3011 8.2124 -6.5609 24 1 12.9414 6.1176 -7.6004 25 1 10.8925 7.2274 -8.2719 26 6 9.6766 5.2872 -1.1926 27 1 10.1745 5.5444 -0.2577 28 6 10.2219 3.9618 -1.7283 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9562 -0.8899 36 1 3.9337 0.9284 -0.8891 37 1 3.9329 0.9287 0.8909 38 1 3.7171 3.3990 -0.8887 39 1 3.7163 3.3985 0.8912 40 1 5.9733 2.3707 0.8911 41 1 5.9734 2.3713 -0.8889 42 1 7.2381 5.6765 -2.7783 43 1 6.6802 6.5785 -1.3361 44 1 8.6676 7.9532 -1.2889 45 1 8.3952 7.7700 -3.0543 46 1 9.6414 4.9829 -3.7868 47 1 10.4083 4.4589 -6.9906 48 1 9.7141 3.7098 -2.6594 49 1 11.2920 4.0568 -1.9124 50 1 10.0478 3.1744 -0.9950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179934214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:35 Heat of formation + Delta-G solvation = -100.564100 kcal Electronic energy + Delta-G solvation = -26871.420622 eV Core-core repulsion = 23040.234125 eV Total energy + Delta-G solvation = -3831.186496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.89829 -39.96710 -37.62019 -36.81925 -34.20458 -34.04201 -31.83249 -30.92222 -30.49617 -28.95070 -26.80571 -25.29758 -23.89236 -23.45825 -22.18244 -21.28105 -21.17394 -19.76142 -18.74949 -17.69510 -17.17566 -16.64439 -16.29807 -15.98763 -15.36787 -15.02488 -14.60116 -14.46030 -14.15783 -13.93524 -13.76633 -13.41008 -13.30970 -13.27321 -12.90902 -12.73900 -12.63286 -12.32836 -12.20074 -11.95112 -11.77184 -11.62508 -11.37587 -11.26731 -11.14669 -11.05080 -10.99387 -10.93944 -10.82807 -10.70547 -10.69400 -10.63208 -10.27145 -10.06937 -9.68093 -9.46875 -9.01739 -8.43565 -7.08662 -5.87163 -3.16823 2.56753 2.98452 3.37169 3.43544 3.45484 4.23645 4.32066 4.50218 4.54129 4.58312 4.64811 4.77559 4.80661 4.98371 5.02273 5.08582 5.18564 5.25713 5.34704 5.38463 5.45602 5.52177 5.55577 5.57258 5.58859 5.64670 5.68594 5.71511 5.76710 5.79565 5.85899 5.91079 5.92998 6.01285 6.03576 6.12993 6.16558 6.27570 6.36610 6.45772 6.56003 6.65029 6.79118 6.96023 7.62404 7.67024 8.18259 8.31114 9.42960 9.97281 10.32400 11.35082 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.002608 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.796558 B =10733.471055 C =11696.447272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.135 4.135 7 C 0.084 3.916 8 H 0.099 0.901 9 F -0.193 7.193 10 C 0.505 3.495 11 O -0.529 6.529 12 N -0.600 5.600 13 C 0.098 3.902 14 C -0.159 4.159 15 C 0.172 3.828 16 H 0.072 0.928 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.124 3.876 27 H 0.072 0.928 28 C -0.149 4.149 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.388 0.612 47 H 0.256 0.744 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.534 -3.602 12.062 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.173 4.173 7 C 0.045 3.955 8 H 0.117 0.883 9 F -0.174 7.174 10 C 0.291 3.709 11 O -0.405 6.405 12 N -0.333 5.333 13 C -0.024 4.024 14 C -0.200 4.200 15 C 0.059 3.941 16 H 0.090 0.910 17 N -0.355 5.355 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.020 3.980 27 H 0.090 0.910 28 C -0.207 4.207 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.224 0.776 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.098 -3.943 12.368 19.911 hybrid contribution 0.277 0.343 -0.904 1.006 sum -14.821 -3.599 11.464 19.079 Atomic orbital electron populations 1.21782 0.96022 1.01490 1.01767 1.21546 0.95745 0.97072 1.02045 1.21624 0.95387 0.96685 1.02098 1.21587 0.95311 0.96414 1.02402 1.21597 0.93921 0.97533 1.02682 1.22054 0.96520 0.93649 1.05117 1.21645 0.92478 0.96098 0.85325 0.88306 1.92853 1.92102 1.84044 1.48416 1.20486 0.89818 0.80584 0.80049 1.90691 1.66007 1.39333 1.44500 1.48745 1.08664 1.36408 1.39524 1.22472 0.95983 0.90165 0.93800 1.23561 0.97702 0.96776 1.01953 1.21201 0.95301 0.91384 0.86165 0.91014 1.42556 1.64271 1.23379 1.05304 1.19287 1.26365 1.01525 0.90299 0.90925 1.24755 1.01099 0.97096 0.97712 1.69670 1.49226 1.18042 1.20851 0.86114 0.79204 0.78885 0.81919 1.20509 1.21866 1.21877 1.22089 0.79256 0.97828 0.98778 0.90979 1.21922 1.01846 0.95893 1.01076 0.92899 0.92830 0.92760 0.92009 0.92096 0.92033 0.91954 0.91739 0.91826 0.91586 0.91304 0.89527 0.89652 0.90585 0.91565 0.91848 0.89219 0.77553 0.93445 0.91473 0.91322 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.88 5.93 -26.74 -0.16 -1.04 16 3 C -0.12 -0.89 5.21 -26.74 -0.14 -1.03 16 4 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 5 C -0.12 -1.08 5.13 -26.73 -0.14 -1.22 16 6 C -0.14 -1.52 4.69 -26.73 -0.13 -1.64 16 7 C 0.08 1.07 3.43 -27.88 -0.10 0.98 16 8 H 0.10 1.06 6.48 -51.93 -0.34 0.72 16 9 F -0.19 -2.70 16.75 2.25 0.04 -2.66 16 10 C 0.51 8.20 6.98 -10.98 -0.08 8.13 16 11 O -0.53 -10.17 15.64 5.56 0.09 -10.09 16 12 N -0.60 -9.63 3.06 -162.89 -0.50 -10.13 16 13 C 0.10 1.41 6.25 -2.42 -0.02 1.40 16 14 C -0.16 -2.47 6.78 -24.47 -0.17 -2.63 16 15 C 0.17 3.15 3.48 -66.10 -0.23 2.92 16 16 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 17 N -0.71 -16.32 4.54 -51.65 -0.23 -16.55 16 18 C -0.24 -6.28 9.96 -15.06 -0.15 -6.43 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 22 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.12 2.15 3.43 -66.96 -0.23 1.92 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 C -0.15 -2.79 8.51 37.16 0.32 -2.47 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 40 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 0.78 7.24 -51.93 -0.38 0.40 16 44 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.39 9.56 5.67 -40.82 -0.23 9.33 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.07 1.38 6.20 -51.93 -0.32 1.05 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.05 1.01 6.88 -51.93 -0.36 0.65 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -29.53 397.29 -9.18 -38.71 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -9.18 Total: 7.55 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.07 Total: -3.21 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.01 Total: -52.72 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.53 -9.18 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179934214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.858 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds