Wall clock time and date at job start Tue Mar 31 2020 11:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46886 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.46977 * 304.99148 * 7 6 5 9 9 F 1.39892 * 109.47256 * 64.99893 * 7 6 5 10 10 C 1.50703 * 109.46801 * 184.99548 * 7 6 5 11 11 O 1.21277 * 120.00423 * 314.99705 * 10 7 6 12 12 N 1.34783 * 119.99934 * 134.99790 * 10 7 6 13 13 C 1.47419 * 125.64779 * 359.69471 * 12 10 7 14 14 C 1.55124 * 104.72366 * 155.81801 * 13 12 10 15 15 C 1.55155 * 101.48842 * 37.29265 * 14 13 12 16 16 H 1.08999 * 110.72081 * 205.97517 * 15 14 13 17 17 N 1.46497 * 110.71779 * 82.69808 * 15 14 13 18 18 C 1.36934 * 120.00166 * 91.48304 * 17 15 14 19 19 H 1.07998 * 119.99876 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00351 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99412 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47482 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47242 * 119.99589 * 22 20 18 25 25 H 1.48493 * 109.47405 * 239.99565 * 22 20 18 26 26 C 1.47014 * 125.64911 * 179.97438 * 12 10 7 27 27 H 1.09003 * 109.88599 * 300.44087 * 26 12 10 28 28 C 1.52999 * 109.88574 * 61.60553 * 26 12 10 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 31 31 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 34 34 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 35 35 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 36 36 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 37 37 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 38 38 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 39 39 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 40 40 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 41 41 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 42 42 H 1.09003 * 110.36698 * 274.74798 * 13 12 10 43 43 H 1.08999 * 110.36829 * 37.06311 * 13 12 10 44 44 H 1.09010 * 111.19205 * 279.18517 * 14 13 12 45 45 H 1.09001 * 110.90864 * 155.27500 * 14 13 12 46 46 H 0.97002 * 119.99976 * 271.47177 * 17 15 14 47 47 H 0.96998 * 119.99338 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.47234 * 58.54386 * 28 26 12 49 49 H 1.08996 * 109.47889 * 178.54333 * 28 26 12 50 50 H 1.08999 * 109.47307 * 298.54848 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8849 0.0013 7 6 6.1200 4.3274 0.0026 8 1 5.6855 4.8670 -0.8388 9 9 5.7499 4.9518 1.1985 10 6 7.6219 4.3292 -0.1211 11 8 8.2864 3.5655 0.5467 12 7 8.2268 5.1797 -0.9740 13 6 7.5438 6.1522 -1.8464 14 6 8.6051 7.2501 -2.1196 15 6 9.9017 6.4054 -2.2321 16 1 10.7752 7.0032 -1.9721 17 7 10.0386 5.8429 -3.5779 18 6 10.7275 6.5309 -4.5407 19 1 11.1695 7.4885 -4.3082 20 6 10.8568 5.9982 -5.8161 21 7 10.3176 4.8314 -6.0996 22 14 11.7959 6.9371 -7.1297 23 1 12.3011 8.2124 -6.5609 24 1 12.9414 6.1176 -7.6004 25 1 10.8925 7.2274 -8.2719 26 6 9.6766 5.2872 -1.1926 27 1 10.1745 5.5444 -0.2577 28 6 10.2219 3.9618 -1.7283 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9562 -0.8899 36 1 3.9337 0.9284 -0.8891 37 1 3.9329 0.9287 0.8909 38 1 3.7171 3.3990 -0.8887 39 1 3.7163 3.3985 0.8912 40 1 5.9733 2.3707 0.8911 41 1 5.9734 2.3713 -0.8889 42 1 7.2381 5.6765 -2.7783 43 1 6.6802 6.5785 -1.3361 44 1 8.6676 7.9532 -1.2889 45 1 8.3952 7.7700 -3.0543 46 1 9.6414 4.9829 -3.7868 47 1 10.4083 4.4589 -6.9906 48 1 9.7141 3.7098 -2.6594 49 1 11.2920 4.0568 -1.9124 50 1 10.0478 3.1744 -0.9950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179934214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:34 Heat of formation + Delta-G solvation = -115.220021 kcal Electronic energy + Delta-G solvation = -26872.056150 eV Core-core repulsion = 23040.234125 eV Total energy + Delta-G solvation = -3831.822025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.96566 -41.30953 -39.00027 -37.51535 -35.80034 -34.93011 -33.46265 -32.31388 -31.49868 -30.46106 -27.68651 -26.79470 -25.52698 -24.61223 -23.30835 -22.00897 -21.84608 -21.12215 -20.05395 -19.42960 -18.53375 -17.71521 -17.62384 -16.74246 -16.60080 -16.26430 -16.12012 -15.72393 -15.29382 -15.13073 -14.76638 -14.75655 -14.54239 -14.25637 -14.10872 -13.91621 -13.75272 -13.41091 -13.35598 -13.08349 -12.98694 -12.88858 -12.65551 -12.56447 -12.42691 -12.30720 -12.27263 -12.03848 -11.99780 -11.79465 -11.65874 -11.59230 -11.46740 -11.39424 -11.32872 -10.93235 -10.74324 -9.76853 -8.99388 -7.91785 -5.19593 1.29291 1.50067 1.51769 1.60379 1.74177 2.58221 3.12159 3.38810 3.40881 3.58192 3.68851 3.79137 3.84420 3.92138 4.00919 4.08434 4.16996 4.24920 4.26429 4.33882 4.35560 4.42967 4.54040 4.58314 4.64198 4.67414 4.78818 4.79957 4.89748 4.91383 4.94918 4.95637 5.03658 5.09796 5.15368 5.19862 5.24003 5.27602 5.30107 5.33093 5.39822 5.41475 5.49527 5.54365 5.58569 6.29930 6.39381 6.89434 7.37678 8.10394 8.34407 9.31572 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.002608 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.796558 B =10733.471055 C =11696.447272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.132 4.132 7 C 0.090 3.910 8 H 0.128 0.872 9 F -0.197 7.197 10 C 0.499 3.501 11 O -0.565 6.565 12 N -0.600 5.600 13 C 0.099 3.901 14 C -0.147 4.147 15 C 0.163 3.837 16 H 0.075 0.925 17 N -0.723 5.723 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.301 1.301 25 H -0.297 1.297 26 C 0.128 3.872 27 H 0.080 0.920 28 C -0.137 4.137 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.377 0.623 47 H 0.249 0.751 48 H 0.045 0.955 49 H 0.059 0.941 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.895 -2.080 12.796 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.171 4.171 7 C 0.051 3.949 8 H 0.145 0.855 9 F -0.178 7.178 10 C 0.286 3.714 11 O -0.444 6.444 12 N -0.332 5.332 13 C -0.022 4.022 14 C -0.187 4.187 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.364 5.364 18 C -0.364 4.364 19 H 0.099 0.901 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.229 1.229 25 H -0.224 1.224 26 C 0.024 3.976 27 H 0.098 0.902 28 C -0.195 4.195 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.212 0.788 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.473 -2.367 13.143 21.206 hybrid contribution 0.732 -0.131 -1.025 1.266 sum -15.741 -2.498 12.118 20.022 Atomic orbital electron populations 1.21781 0.95461 1.01844 1.01949 1.21555 0.96265 0.96834 1.01903 1.21594 0.94582 0.96963 1.02336 1.21571 0.95995 0.95907 1.02142 1.21561 0.92014 0.98137 1.03316 1.22047 0.98109 0.92561 1.04344 1.21731 0.89816 0.97374 0.85930 0.85484 1.92848 1.91861 1.84167 1.48945 1.21184 0.91298 0.79692 0.79209 1.90673 1.67185 1.40642 1.45875 1.48803 1.08086 1.36732 1.39616 1.22565 0.96697 0.89304 0.93641 1.23414 0.95715 0.96963 1.02635 1.21406 0.97052 0.92041 0.84166 0.90678 1.42659 1.64075 1.23030 1.06625 1.19656 1.24746 1.01370 0.90633 0.90122 1.25466 1.03030 0.98146 0.99912 1.69817 1.51530 1.19791 1.20775 0.85147 0.77503 0.78123 0.79406 1.18899 1.22851 1.22409 1.21935 0.80588 0.96490 0.98614 0.90157 1.21760 1.01071 0.96832 0.99827 0.92511 0.92579 0.92639 0.92247 0.92195 0.91790 0.91669 0.91963 0.92210 0.90342 0.91188 0.90977 0.89854 0.91550 0.87827 0.89065 0.90169 0.78814 0.94242 0.93642 0.92186 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.64 5.93 30.59 0.18 -1.46 16 3 C -0.12 -1.55 5.21 30.59 0.16 -1.39 16 4 C -0.12 -1.80 5.21 30.59 0.16 -1.64 16 5 C -0.11 -1.82 5.13 30.59 0.16 -1.66 16 6 C -0.13 -2.81 4.69 30.59 0.14 -2.66 16 7 C 0.09 2.11 3.43 29.85 0.10 2.22 16 8 H 0.13 2.27 6.48 -2.39 -0.02 2.25 16 9 F -0.20 -5.04 16.75 44.97 0.75 -4.28 16 10 C 0.50 15.56 6.98 87.66 0.61 16.17 16 11 O -0.56 -21.58 15.64 -3.02 -0.05 -21.63 16 12 N -0.60 -18.23 3.06 -787.64 -2.41 -20.64 16 13 C 0.10 2.59 6.25 86.93 0.54 3.13 16 14 C -0.15 -4.16 6.78 32.06 0.22 -3.94 16 15 C 0.16 5.78 3.48 46.18 0.16 5.94 16 16 H 0.08 2.62 8.09 -2.39 -0.02 2.60 16 17 N -0.72 -32.92 4.54 -317.34 -1.44 -34.36 16 18 C -0.23 -11.85 9.96 84.04 0.84 -11.01 16 19 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.97 -56.77 13.06 21.65 0.28 -56.49 16 22 Si 0.97 44.28 29.55 68.60 2.03 46.30 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 26 C 0.13 4.32 3.43 45.34 0.16 4.47 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 28 C -0.14 -5.18 8.51 71.98 0.61 -4.57 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.13 7.93 -2.39 -0.02 1.11 16 40 H 0.07 1.74 8.05 -2.39 -0.02 1.72 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.10 1.98 7.24 -2.39 -0.02 1.96 16 44 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.38 18.86 5.67 -92.71 -0.53 18.34 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 48 H 0.04 1.91 6.20 -2.38 -0.01 1.90 16 49 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 50 H 0.05 1.92 6.88 -2.39 -0.02 1.90 16 Total: -1.00 -63.54 397.29 4.75 -58.79 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.37 Total: 33.22 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.22 Total: -0.91 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.57 Total: -111.50 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.75 Total: -4.28 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.54 4.75 -58.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179934214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.428 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds