Wall clock time and date at job start Tue Mar 31 2020 10:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42909 * 109.46802 * 2 1 4 4 C 1.42893 * 113.99757 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46997 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47000 * 65.00256 * 5 4 3 7 7 C 1.42899 * 113.99681 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47647 * 330.00135 * 7 6 5 9 9 C 1.53006 * 109.46995 * 90.00420 * 7 6 5 10 10 C 1.50704 * 109.46987 * 209.99725 * 7 6 5 11 11 O 1.21283 * 119.99911 * 343.53108 * 10 7 6 12 12 N 1.34774 * 119.99915 * 163.52040 * 10 7 6 13 13 C 1.47424 * 125.64650 * 4.86475 * 12 10 7 14 14 C 1.54914 * 104.82923 * 155.83182 * 13 12 10 15 15 C 1.55157 * 101.58273 * 37.00853 * 14 13 12 16 16 H 1.08998 * 110.72003 * 205.95318 * 15 14 13 17 17 N 1.46499 * 110.71999 * 82.85987 * 15 14 13 18 18 C 1.36936 * 120.00133 * 152.47499 * 17 15 14 19 19 H 1.08005 * 119.99877 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00192 * 179.72276 * 18 17 15 21 21 N 1.31619 * 119.99962 * 0.27945 * 20 18 17 22 22 Si 1.86802 * 120.00077 * 180.27862 * 20 18 17 23 23 H 1.48496 * 109.47095 * 89.99964 * 22 20 18 24 24 H 1.48497 * 109.46942 * 210.00071 * 22 20 18 25 25 H 1.48498 * 109.47051 * 330.00119 * 22 20 18 26 26 C 1.47024 * 125.64635 * 184.81633 * 12 10 7 27 27 H 1.08998 * 109.88145 * 300.51321 * 26 12 10 28 28 C 1.52992 * 109.88081 * 61.68481 * 26 12 10 29 29 H 1.08997 * 109.47161 * 60.00394 * 1 2 3 30 30 H 1.09004 * 109.46380 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47405 * 299.99481 * 1 2 3 32 32 H 1.08997 * 109.47405 * 240.00519 * 2 1 3 33 33 H 1.08997 * 109.47161 * 119.99606 * 2 1 3 34 34 H 1.09005 * 109.46889 * 60.00466 * 4 3 2 35 35 H 1.08999 * 109.47584 * 300.00450 * 4 3 2 36 36 H 1.09006 * 109.46808 * 305.00357 * 5 4 3 37 37 H 1.08998 * 109.47212 * 185.00573 * 5 4 3 38 38 H 1.09001 * 109.47141 * 65.58590 * 9 7 6 39 39 H 1.08998 * 109.46731 * 185.59197 * 9 7 6 40 40 H 1.08999 * 109.47059 * 305.59172 * 9 7 6 41 41 H 1.08995 * 110.37180 * 36.99574 * 13 12 10 42 42 H 1.09003 * 110.36496 * 274.66641 * 13 12 10 43 43 H 1.08992 * 111.00468 * 278.93330 * 14 13 12 44 44 H 1.09006 * 110.99997 * 155.08052 * 14 13 12 45 45 H 0.97001 * 120.00278 * 332.47737 * 17 15 14 46 46 H 0.97001 * 119.99736 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.47320 * 176.72807 * 28 26 12 48 48 H 1.09002 * 109.46988 * 296.72831 * 28 26 12 49 49 H 1.08996 * 109.47650 * 56.73078 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 8 3.3975 3.5452 1.2223 7 6 3.7192 4.9337 1.3253 8 1 4.6315 5.1379 0.7650 9 6 2.5712 5.7670 0.7520 10 6 3.9276 5.2949 2.7735 11 8 3.5308 4.5527 3.6468 12 7 4.5551 6.4426 3.0981 13 6 4.9963 7.4793 2.1473 14 6 5.0624 8.7818 2.9833 15 6 5.5861 8.2521 4.3444 16 1 5.2730 8.9054 5.1587 17 7 7.0448 8.1179 4.3217 18 6 7.7601 8.2226 5.4847 19 1 7.2489 8.4037 6.4187 20 6 9.1417 8.0898 5.4641 21 7 9.7647 7.8686 4.3259 22 14 10.1168 8.2249 7.0516 23 1 10.2454 6.8807 7.6695 24 1 11.4681 8.7661 6.7580 25 1 9.4120 9.1353 7.9895 26 6 4.9123 6.8685 4.4592 27 1 4.0139 6.9435 5.0719 28 6 5.8865 5.8652 5.0796 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8339 0.9766 -0.8892 35 1 3.8333 0.9768 0.8907 36 1 3.3497 3.4418 -0.8407 37 1 4.9081 3.0257 -0.0880 38 1 1.6842 5.6390 1.3724 39 1 2.8570 6.8188 0.7391 40 1 2.3547 5.4369 -0.2640 41 1 4.2736 7.5842 1.3381 42 1 5.9807 7.2341 1.7485 43 1 4.0735 9.2270 3.0918 44 1 5.7632 9.4923 2.5448 45 1 7.5039 7.9550 3.4829 46 1 10.7302 7.7762 4.3115 47 1 6.1918 6.2169 6.0651 48 1 5.3977 4.8956 5.1751 49 1 6.7642 5.7682 4.4405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180207758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:13 Heat of formation + Delta-G solvation = -109.722265 kcal Electronic energy + Delta-G solvation = -27408.168487 eV Core-core repulsion = 23564.212073 eV Total energy + Delta-G solvation = -3843.956414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08152 -38.65926 -37.81197 -36.77065 -34.04990 -32.58377 -31.72068 -30.99604 -30.51363 -29.05989 -28.56757 -25.29349 -24.49334 -23.35680 -23.01130 -22.71498 -21.92726 -19.93368 -18.53228 -17.48242 -17.24511 -17.05821 -16.67461 -16.06857 -15.73410 -15.13329 -15.04263 -14.59183 -14.34416 -13.99515 -13.70625 -13.56256 -13.52707 -13.10313 -12.97464 -12.72978 -12.68232 -12.47821 -12.33120 -12.07396 -11.74069 -11.64698 -11.44223 -11.42103 -11.26750 -11.00937 -10.88848 -10.86602 -10.59017 -10.47769 -10.14677 -10.05716 -9.88706 -9.80765 -9.67460 -9.18471 -8.95490 -8.18792 -7.05076 -5.83543 -3.12561 2.85976 3.03536 3.40790 3.44633 3.46758 3.47438 3.86684 4.53755 4.60343 4.76630 4.80746 4.89338 4.92938 4.96283 5.00361 5.05031 5.10801 5.15431 5.23086 5.26757 5.35662 5.42330 5.50279 5.53214 5.60902 5.65241 5.67708 5.72424 5.76879 5.86293 5.87848 6.07533 6.11829 6.24588 6.29401 6.45038 6.57592 6.67492 6.85507 6.93298 7.02252 7.15592 7.36874 7.65361 7.94115 8.34013 8.55472 9.46307 9.99944 10.35259 11.38595 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.002710 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.203087 B =10330.414947 C =10790.638265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.060 3.940 6 O -0.348 6.348 7 C 0.074 3.926 8 H 0.080 0.920 9 C -0.169 4.169 10 C 0.528 3.472 11 O -0.525 6.525 12 N -0.604 5.604 13 C 0.096 3.904 14 C -0.144 4.144 15 C 0.170 3.830 16 H 0.074 0.926 17 N -0.709 5.709 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.110 3.890 27 H 0.059 0.941 28 C -0.133 4.133 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.066 0.934 48 H 0.037 0.963 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.613 -8.030 -13.073 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.013 3.987 8 H 0.098 0.902 9 C -0.226 4.226 10 C 0.315 3.685 11 O -0.401 6.401 12 N -0.340 5.340 13 C -0.027 4.027 14 C -0.183 4.183 15 C 0.058 3.942 16 H 0.092 0.908 17 N -0.348 5.348 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.005 3.995 27 H 0.078 0.922 28 C -0.191 4.191 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.983 -8.417 -12.289 21.128 hybrid contribution 1.192 -0.192 0.252 1.234 sum -13.791 -8.608 -12.038 20.229 Atomic orbital electron populations 1.21732 0.93776 1.02063 1.03248 1.22452 0.95703 0.83988 0.99886 1.87970 1.20534 1.26088 1.95376 1.22489 0.82178 0.95490 1.00916 1.22631 0.98404 0.92699 0.87908 1.88115 1.80086 1.20975 1.37472 1.21877 0.98703 0.83611 0.94526 0.90173 1.22241 0.98869 0.99753 1.01752 1.19864 0.77996 0.80529 0.90151 1.90684 1.49348 1.49743 1.50319 1.48561 1.57247 1.18742 1.09432 1.22433 0.99636 0.88192 0.92439 1.23126 1.01545 0.96011 0.97618 1.21251 0.86088 0.91744 0.95131 0.90776 1.42329 0.99003 1.85143 1.08327 1.19191 0.89025 1.41417 0.87259 0.91037 1.24718 0.96570 1.02536 0.96793 1.69650 1.08302 1.55859 1.24068 0.86222 0.79607 0.77673 0.82887 1.21702 1.21845 1.20715 1.22725 0.97149 0.98074 0.81563 0.92247 1.21772 0.98744 0.96774 1.01849 0.91985 0.91248 0.91630 0.93679 0.93334 0.91848 0.92181 0.92338 0.91554 0.91188 0.90797 0.91341 0.91286 0.91196 0.90971 0.89474 0.78111 0.93488 0.91534 0.94400 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.63 10.31 -40.08 -0.41 -5.05 16 4 C 0.07 0.69 6.32 37.16 0.23 0.92 16 5 C 0.06 0.67 6.13 37.16 0.23 0.90 16 6 O -0.35 -5.35 9.54 -59.36 -0.57 -5.92 16 7 C 0.07 1.04 2.49 -27.88 -0.07 0.97 16 8 H 0.08 0.96 7.54 -51.93 -0.39 0.57 16 9 C -0.17 -1.89 9.39 37.16 0.35 -1.54 16 10 C 0.53 9.44 6.89 -10.98 -0.08 9.37 16 11 O -0.53 -11.58 15.84 -13.79 -0.22 -11.80 16 12 N -0.60 -10.18 3.06 -163.02 -0.50 -10.68 16 13 C 0.10 1.32 6.41 -2.53 -0.02 1.31 16 14 C -0.14 -2.06 6.68 -24.58 -0.16 -2.22 16 15 C 0.17 3.13 3.52 -66.10 -0.23 2.90 16 16 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 17 N -0.71 -16.15 3.86 -51.65 -0.20 -16.35 16 18 C -0.24 -6.14 8.41 -15.06 -0.13 -6.27 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.11 2.06 3.41 -66.95 -0.23 1.84 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 C -0.13 -2.83 8.03 37.15 0.30 -2.53 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.56 7.78 -51.93 -0.40 0.16 16 37 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.70 5.76 -51.93 -0.30 0.41 16 40 H 0.07 0.65 7.78 -51.93 -0.40 0.24 16 41 H 0.07 0.74 5.43 -51.93 -0.28 0.46 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.38 9.38 7.84 -40.82 -0.32 9.06 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.07 1.46 7.33 -51.93 -0.38 1.07 16 48 H 0.04 0.82 7.10 -51.93 -0.37 0.45 16 49 H 0.07 1.61 7.43 -51.93 -0.39 1.23 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -32.84 390.62 -8.27 -41.12 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.69 Total: 6.90 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 0.73 Total: 5.21 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.03 Total: -53.12 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -1.20 Total: -22.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.84 -8.27 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180207758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.607 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds