Wall clock time and date at job start Tue Mar 31 2020 10:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47224 * 65.00060 * 5 4 3 7 7 C 1.42895 * 114.00294 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.47132 * 29.99860 * 7 6 5 9 9 C 1.53002 * 109.47499 * 270.00142 * 7 6 5 10 10 C 1.50699 * 109.47404 * 149.99977 * 7 6 5 11 11 O 1.21289 * 119.99598 * 4.99944 * 10 7 6 12 12 N 1.34772 * 120.00511 * 185.00433 * 10 7 6 13 13 C 1.47430 * 125.64640 * 359.69089 * 12 10 7 14 14 C 1.55124 * 104.72504 * 155.81934 * 13 12 10 15 15 C 1.55158 * 101.48629 * 37.29107 * 14 13 12 16 16 H 1.08993 * 110.72090 * 205.96811 * 15 14 13 17 17 N 1.46507 * 110.71817 * 82.69486 * 15 14 13 18 18 C 1.36939 * 119.99536 * 91.47512 * 17 15 14 19 19 H 1.08003 * 120.00291 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99690 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00305 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00008 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47181 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47013 * 120.00311 * 22 20 18 25 25 H 1.48495 * 109.47729 * 240.00262 * 22 20 18 26 26 C 1.47021 * 125.65104 * 179.97438 * 12 10 7 27 27 H 1.08994 * 109.88188 * 300.43969 * 26 12 10 28 28 C 1.53001 * 109.88110 * 61.44959 * 26 12 10 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 31 31 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 32 32 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 33 33 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 34 34 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 35 35 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 36 36 H 1.09004 * 109.47113 * 184.99738 * 5 4 3 37 37 H 1.08993 * 109.47646 * 305.00069 * 5 4 3 38 38 H 1.09000 * 109.46991 * 59.99676 * 9 7 6 39 39 H 1.08997 * 109.47091 * 180.02562 * 9 7 6 40 40 H 1.08998 * 109.46635 * 300.00205 * 9 7 6 41 41 H 1.09007 * 110.36351 * 274.74836 * 13 12 10 42 42 H 1.08997 * 110.36828 * 37.06737 * 13 12 10 43 43 H 1.09001 * 111.19022 * 279.18998 * 14 13 12 44 44 H 1.08998 * 110.91010 * 155.27158 * 14 13 12 45 45 H 0.96995 * 120.00196 * 271.47560 * 17 15 14 46 46 H 0.97002 * 120.00408 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.47234 * 58.54748 * 28 26 12 48 48 H 1.09004 * 109.46885 * 178.54507 * 28 26 12 49 49 H 1.08999 * 109.46892 * 298.54248 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 8 3.3973 3.5463 1.2204 7 6 3.7189 4.9349 1.3223 8 1 3.7318 5.3788 0.3268 9 6 5.0963 5.0933 1.9692 10 6 2.6835 5.6295 2.1687 11 8 1.8127 4.9841 2.7129 12 7 2.7250 6.9680 2.3210 13 6 3.7271 7.8699 1.7243 14 6 3.0237 9.2508 1.6560 15 6 2.2068 9.2470 2.9751 16 1 1.3330 9.8929 2.8895 17 7 3.0454 9.6542 4.1053 18 6 3.1116 10.9729 4.4685 19 1 2.5453 11.7126 3.9222 20 6 3.9057 11.3587 5.5397 21 7 4.5955 10.4572 6.2058 22 14 3.9955 13.1574 6.0357 23 1 3.1327 13.9630 5.1346 24 1 3.5254 13.3087 7.4362 25 1 5.3992 13.6304 5.9309 26 6 1.7821 7.7699 3.1142 27 1 0.7700 7.6374 2.7320 28 6 1.8435 7.3437 4.5824 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8332 0.9769 0.8908 35 1 3.8340 0.9766 -0.8891 36 1 4.9081 3.0256 -0.0892 37 1 3.3498 3.4411 -0.8424 38 1 5.8452 4.5909 1.3570 39 1 5.3413 6.1525 2.0473 40 1 5.0834 4.6494 2.9646 41 1 4.6133 7.9238 2.3569 42 1 3.9945 7.5309 0.7235 43 1 2.3659 9.3154 0.7893 44 1 3.7543 10.0597 1.6513 45 1 3.5537 8.9898 4.5962 46 1 5.1507 10.7268 6.9541 47 1 2.8596 7.4714 4.9556 48 1 1.1612 7.9595 5.1683 49 1 1.5534 6.2966 4.6692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180207759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:16 Heat of formation + Delta-G solvation = -107.912022 kcal Electronic energy + Delta-G solvation = -27390.647867 eV Core-core repulsion = 23546.769951 eV Total energy + Delta-G solvation = -3843.877916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14058 -38.68209 -37.81783 -36.78513 -34.04411 -32.63910 -31.76939 -30.89719 -30.59147 -29.09180 -28.57500 -25.26113 -24.49906 -23.54430 -22.99314 -22.76440 -21.91935 -19.86941 -18.50103 -17.61199 -17.33739 -16.95225 -16.61813 -16.11626 -15.65750 -15.43465 -15.07066 -14.67410 -14.39705 -13.83550 -13.72679 -13.51909 -13.29491 -13.13569 -13.06193 -12.75401 -12.58535 -12.37922 -12.24790 -12.11984 -11.82896 -11.65992 -11.54408 -11.30552 -11.25531 -11.07401 -10.98292 -10.89614 -10.77533 -10.60105 -10.19998 -10.01635 -9.94613 -9.79715 -9.62402 -9.16206 -8.97347 -8.25839 -7.03569 -5.82745 -3.12186 2.86442 2.95689 3.39767 3.44507 3.45984 3.48039 3.81791 4.53724 4.58505 4.74320 4.81099 4.84297 4.91122 5.00531 5.02727 5.06532 5.12141 5.13635 5.18784 5.28041 5.39969 5.45402 5.53897 5.58573 5.60238 5.60568 5.68069 5.70385 5.77124 5.86745 5.93296 5.99030 6.12376 6.14965 6.35892 6.44166 6.53667 6.64622 6.74621 6.85096 6.97986 7.05786 7.09816 7.66155 7.88326 8.35458 8.51275 9.47325 10.02670 10.37826 11.39491 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.002571 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.625896 B =10886.443481 C =11155.344732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.348 6.348 7 C 0.076 3.924 8 H 0.081 0.919 9 C -0.175 4.175 10 C 0.528 3.472 11 O -0.523 6.523 12 N -0.607 5.607 13 C 0.102 3.898 14 C -0.160 4.160 15 C 0.172 3.828 16 H 0.070 0.930 17 N -0.713 5.713 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.128 3.872 27 H 0.070 0.930 28 C -0.149 4.149 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.388 0.612 46 H 0.255 0.745 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -16.545 -15.767 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.010 4.010 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.015 3.985 8 H 0.099 0.901 9 C -0.232 4.232 10 C 0.315 3.685 11 O -0.398 6.398 12 N -0.343 5.343 13 C -0.020 4.020 14 C -0.201 4.201 15 C 0.060 3.940 16 H 0.088 0.912 17 N -0.355 5.355 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.025 3.975 27 H 0.088 0.912 28 C -0.207 4.207 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.168 -16.747 -15.277 22.698 hybrid contribution 0.813 0.698 0.193 1.089 sum -0.355 -16.049 -15.083 22.027 Atomic orbital electron populations 1.21736 0.93708 1.02023 1.03453 1.22448 0.95830 0.83934 0.99721 1.88025 1.20309 1.26052 1.95320 1.22470 0.82461 0.95398 1.00709 1.22614 0.98285 0.92875 0.87836 1.88114 1.80561 1.20677 1.37248 1.21834 0.93998 0.83609 0.99087 0.90099 1.22308 0.94747 1.03780 1.02405 1.19859 0.85773 0.80811 0.82100 1.90697 1.36902 1.64188 1.48005 1.48581 1.30589 1.05000 1.50164 1.22435 0.92248 0.90379 0.96969 1.23562 1.00810 0.95742 0.99984 1.21194 0.93897 0.90876 0.88058 0.91164 1.42560 1.53016 1.06774 1.33179 1.19285 1.22573 0.84621 1.10851 0.90974 1.24746 0.99871 0.97581 0.98501 1.69668 1.33028 1.32043 1.23048 0.86127 0.77214 0.84726 0.78133 1.20536 1.21894 1.21929 1.22007 0.92160 0.91454 0.91909 0.91227 1.21918 1.03247 1.00780 0.94779 0.91259 0.91492 0.91944 0.93748 0.93412 0.92339 0.91950 0.91672 0.92399 0.91602 0.90170 0.91030 0.90788 0.91922 0.91986 0.89410 0.77523 0.93481 0.91593 0.91537 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.38 -4.75 10.31 -40.08 -0.41 -5.16 16 4 C 0.07 0.64 6.32 37.16 0.23 0.88 16 5 C 0.06 0.63 6.13 37.16 0.23 0.85 16 6 O -0.35 -5.14 9.49 -59.70 -0.57 -5.71 16 7 C 0.08 1.03 2.48 -27.88 -0.07 0.96 16 8 H 0.08 0.90 7.27 -51.93 -0.38 0.52 16 9 C -0.17 -2.06 9.39 37.16 0.35 -1.71 16 10 C 0.53 9.24 7.03 -10.99 -0.08 9.16 16 11 O -0.52 -11.23 15.53 -14.31 -0.22 -11.46 16 12 N -0.61 -10.08 3.06 -162.88 -0.50 -10.58 16 13 C 0.10 1.49 5.31 -2.41 -0.01 1.47 16 14 C -0.16 -2.51 6.78 -24.47 -0.17 -2.67 16 15 C 0.17 3.23 3.48 -66.09 -0.23 3.00 16 16 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 17 N -0.71 -16.65 4.55 -51.65 -0.23 -16.88 16 18 C -0.24 -6.33 9.96 -15.06 -0.15 -6.48 16 19 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 22 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.13 2.31 3.42 -66.95 -0.23 2.08 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 C -0.15 -2.93 8.52 37.16 0.32 -2.61 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 37 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 39 H 0.08 0.93 5.55 -51.93 -0.29 0.64 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.16 7.17 -51.93 -0.37 0.78 16 42 H 0.06 0.72 7.33 -51.93 -0.38 0.34 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.39 9.79 5.69 -40.82 -0.23 9.55 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.07 1.42 6.21 -51.93 -0.32 1.09 16 48 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 49 H 0.05 1.10 6.87 -51.93 -0.36 0.74 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -33.01 389.99 -8.24 -41.24 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.61 Total: 7.98 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 0.73 Total: 4.41 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.01 Total: -53.85 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.20 Total: -22.33 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.01 -8.24 -41.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180207759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.669 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds