Wall clock time and date at job start Tue Mar 31 2020 11:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47368 * 2 1 4 4 C 1.52998 * 109.46736 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46841 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47037 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47187 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46917 * 54.99763 * 7 6 5 9 9 F 1.39897 * 109.47033 * 294.99876 * 7 6 5 10 10 C 1.50700 * 109.47290 * 174.99439 * 7 6 5 11 11 O 1.21286 * 119.99561 * 45.00615 * 10 7 6 12 12 N 1.34769 * 120.00383 * 224.99879 * 10 7 6 13 13 C 1.47024 * 125.64730 * 359.69730 * 12 10 7 14 14 C 1.54332 * 107.26835 * 178.84566 * 13 12 10 15 15 C 1.55160 * 103.01981 * 338.14160 * 14 13 12 16 16 H 1.08995 * 111.03937 * 277.21662 * 15 14 13 17 17 N 1.46504 * 111.00707 * 153.37709 * 15 14 13 18 18 C 1.46498 * 119.99990 * 307.80839 * 17 15 14 19 19 C 1.36937 * 120.00043 * 127.79953 * 17 15 14 20 20 H 1.08004 * 119.99360 * 23.26846 * 19 17 15 21 21 C 1.38811 * 120.00027 * 203.26363 * 19 17 15 22 22 N 1.31612 * 120.00285 * 13.82641 * 21 19 17 23 23 Si 1.86803 * 119.99620 * 193.82198 * 21 19 17 24 24 H 1.48495 * 109.47155 * 60.00671 * 23 21 19 25 25 H 1.48507 * 109.46670 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47412 * 300.00075 * 23 21 19 27 27 C 1.47429 * 125.65195 * 180.02562 * 12 10 7 28 28 H 1.09008 * 109.46847 * 59.99855 * 1 2 3 29 29 H 1.09000 * 109.47626 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46894 * 300.00557 * 1 2 3 31 31 H 1.09003 * 109.46894 * 239.99443 * 2 1 3 32 32 H 1.08998 * 109.46769 * 120.00090 * 2 1 3 33 33 H 1.08998 * 109.46722 * 60.00108 * 3 2 1 34 34 H 1.08998 * 109.47250 * 299.99796 * 3 2 1 35 35 H 1.08998 * 109.47322 * 60.00603 * 4 3 2 36 36 H 1.08997 * 109.47696 * 299.99831 * 4 3 2 37 37 H 1.08998 * 109.47071 * 299.99878 * 5 4 3 38 38 H 1.08997 * 109.47018 * 59.99631 * 5 4 3 39 39 H 1.09007 * 109.47445 * 299.99649 * 6 5 4 40 40 H 1.08997 * 109.47749 * 59.99796 * 6 5 4 41 41 H 1.08998 * 109.88316 * 298.39469 * 13 12 10 42 42 H 1.09000 * 109.88215 * 59.55833 * 13 12 10 43 43 H 1.08995 * 110.85587 * 219.67500 * 14 13 12 44 44 H 1.09005 * 110.67079 * 96.51981 * 14 13 12 45 45 H 1.09000 * 109.47405 * 95.15815 * 18 17 15 46 46 H 1.08996 * 109.47385 * 215.15586 * 18 17 15 47 47 H 1.08997 * 109.47135 * 335.15664 * 18 17 15 48 48 H 0.96999 * 120.00477 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.36613 * 322.93367 * 27 12 10 50 50 H 1.08996 * 110.36580 * 85.25753 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 6 4.0802 2.8848 0.0013 6 6 5.6101 2.8847 0.0013 7 6 6.1202 4.3272 0.0013 8 1 5.6856 4.8663 0.8431 9 9 5.7502 4.9526 -1.1941 10 6 7.6221 4.3289 0.1253 11 8 8.2866 3.5656 -0.5433 12 7 8.2269 5.1786 0.9788 13 6 7.5465 6.1565 1.8403 14 6 8.6353 6.8813 2.6595 15 6 9.8237 5.8845 2.6202 16 1 9.7126 5.1129 3.3821 17 7 11.1019 6.5850 2.7688 18 6 11.4203 7.7203 1.8995 19 6 11.9988 6.1786 3.7205 20 1 11.9663 5.1663 4.0957 21 6 12.9496 7.0675 4.2026 22 7 12.8287 8.3556 3.9610 23 14 14.4008 6.4355 5.1947 24 1 15.1863 5.4824 4.3704 25 1 15.2645 7.5770 5.5904 26 1 13.9050 5.7451 6.4124 27 6 9.6808 5.2862 1.1983 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8891 36 1 3.9330 0.9286 0.8908 37 1 3.7173 3.3989 -0.8887 38 1 3.7164 3.3984 0.8912 39 1 5.9735 2.3705 0.8911 40 1 5.9735 2.3713 -0.8888 41 1 7.0014 6.8745 1.2275 42 1 6.8594 5.6432 2.5130 43 1 8.3042 7.0463 3.6847 44 1 8.9079 7.8251 2.1871 45 1 11.1526 8.6495 2.4025 46 1 12.4878 7.7210 1.6792 47 1 10.8576 7.6352 0.9699 48 1 13.4933 8.9768 4.2976 49 1 10.1452 4.3011 1.1528 50 1 10.1277 5.9517 0.4598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193478142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:21 Heat of formation + Delta-G solvation = -89.645414 kcal Electronic energy + Delta-G solvation = -26409.583387 eV Core-core repulsion = 22578.870361 eV Total energy + Delta-G solvation = -3830.713027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.95608 -39.81035 -37.59398 -36.89814 -34.89666 -34.24567 -31.83126 -30.73607 -29.83554 -28.32507 -26.74379 -26.07915 -24.16011 -22.82555 -22.36544 -21.35698 -21.23213 -19.40905 -19.25894 -17.62564 -17.10604 -16.72712 -16.14529 -16.05351 -15.45533 -15.28885 -14.60775 -14.55386 -14.23317 -13.95290 -13.54432 -13.50392 -13.42795 -13.26754 -12.92308 -12.71390 -12.56265 -12.53754 -12.16583 -12.02705 -11.95738 -11.70144 -11.47698 -11.32128 -11.21131 -11.02228 -10.97119 -10.83621 -10.78490 -10.72409 -10.55982 -10.54119 -10.32429 -9.93824 -9.93394 -9.63179 -8.64594 -8.47872 -6.85831 -5.80891 -3.28877 2.47913 2.91389 3.35209 3.41050 3.42437 4.15958 4.23653 4.42652 4.46541 4.50173 4.57722 4.70132 4.73135 4.92455 4.94703 5.01777 5.14259 5.20421 5.25287 5.29126 5.38043 5.43192 5.48252 5.50099 5.52603 5.57375 5.63316 5.68944 5.72412 5.78729 5.83399 5.84364 5.93634 5.94860 6.04974 6.08571 6.20744 6.30827 6.41165 6.55787 6.71251 6.80396 7.28548 7.57576 7.64618 7.73567 8.09077 8.30639 9.13780 9.76005 10.24548 11.23558 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.002139 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.649719 B =13089.855479 C =13476.835681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.085 3.915 8 H 0.099 0.901 9 F -0.192 7.192 10 C 0.503 3.497 11 O -0.529 6.529 12 N -0.605 5.605 13 C 0.096 3.904 14 C -0.150 4.150 15 C 0.174 3.826 16 H 0.079 0.921 17 N -0.584 5.584 18 C 0.158 3.842 19 C -0.263 4.263 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.904 5.904 23 Si 0.907 3.093 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.082 3.918 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.042 0.958 47 H 0.002 0.998 48 H 0.254 0.746 49 H 0.074 0.926 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.770 -9.671 -5.933 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.174 4.174 7 C 0.046 3.954 8 H 0.117 0.883 9 F -0.173 7.173 10 C 0.288 3.712 11 O -0.405 6.405 12 N -0.339 5.339 13 C -0.027 4.027 14 C -0.191 4.191 15 C 0.063 3.937 16 H 0.098 0.902 17 N -0.304 5.304 18 C 0.014 3.986 19 C -0.393 4.393 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.737 3.263 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 C -0.042 4.042 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.020 0.980 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.287 -9.933 -6.304 24.321 hybrid contribution 0.776 -0.008 0.496 0.922 sum -20.510 -9.941 -5.807 23.521 Atomic orbital electron populations 1.21784 0.95992 1.01514 1.01781 1.21547 0.95775 0.97046 1.02035 1.21626 0.95352 0.96706 1.02122 1.21589 0.95343 0.96392 1.02392 1.21602 0.93871 0.97543 1.02738 1.22063 0.96546 0.93672 1.05118 1.21621 0.92325 0.96028 0.85439 0.88347 1.92864 1.92051 1.83974 1.48372 1.20544 0.89901 0.80665 0.80077 1.90719 1.66143 1.39716 1.43958 1.48575 1.09407 1.35949 1.39934 1.22189 0.96479 0.91085 0.92966 1.23223 0.95776 1.00316 0.99739 1.21413 0.86028 0.93491 0.92767 0.90242 1.43804 1.13457 1.34993 1.38154 1.20821 0.98242 0.90192 0.89360 1.19166 1.09099 0.94924 1.16086 0.91275 1.25028 1.00393 0.94946 0.98887 1.70050 1.35385 1.00672 1.48663 0.86307 0.82461 0.77658 0.79921 1.20963 1.21585 1.20849 1.23126 0.78354 1.02006 1.00689 0.92791 0.92884 0.92783 0.92066 0.92054 0.91984 0.91972 0.91770 0.91814 0.91218 0.91609 0.89749 0.89451 0.91684 0.91537 0.90236 0.90343 0.94688 0.93945 0.97974 0.93554 0.90751 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.49 16 2 C -0.13 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.12 -0.78 5.21 -26.73 -0.14 -0.92 16 4 C -0.12 -0.86 5.21 -26.73 -0.14 -0.99 16 5 C -0.12 -0.95 5.13 -26.73 -0.14 -1.09 16 6 C -0.14 -1.37 4.69 -26.73 -0.13 -1.50 16 7 C 0.09 1.01 3.54 -27.88 -0.10 0.91 16 8 H 0.10 0.91 6.68 -51.93 -0.35 0.56 16 9 F -0.19 -2.60 16.74 2.25 0.04 -2.56 16 10 C 0.50 7.96 7.19 -10.99 -0.08 7.88 16 11 O -0.53 -10.29 16.86 5.55 0.09 -10.19 16 12 N -0.60 -9.47 3.33 -170.50 -0.57 -10.04 16 13 C 0.10 1.23 5.96 -3.06 -0.02 1.22 16 14 C -0.15 -2.39 6.50 -24.89 -0.16 -2.55 16 15 C 0.17 3.34 3.54 -65.77 -0.23 3.11 16 16 H 0.08 1.53 7.96 -51.93 -0.41 1.12 16 17 N -0.58 -13.91 2.96 -171.02 -0.51 -14.42 16 18 C 0.16 3.72 7.57 59.85 0.45 4.18 16 19 C -0.26 -6.97 9.60 -15.06 -0.14 -7.12 16 20 H 0.07 1.79 7.87 -52.48 -0.41 1.37 16 21 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 22 N -0.90 -25.49 10.77 55.49 0.60 -24.89 16 23 Si 0.91 21.34 29.58 -169.99 -5.03 16.31 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.08 1.50 6.47 -2.52 -0.02 1.49 16 28 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 45 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 46 H 0.04 1.09 7.38 -51.93 -0.38 0.70 16 47 H 0.00 0.04 6.38 -51.93 -0.33 -0.29 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 49 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 50 H 0.07 1.37 6.42 -51.93 -0.33 1.03 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -30.31 396.09 -9.37 -39.68 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -9.25 Total: -3.15 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.72 Total: 3.29 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.47 Total: -49.35 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.31 -9.37 -39.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193478142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.964 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds