Wall clock time and date at job start Tue Mar 31 2020 11:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47244 * 2 1 4 4 C 1.52999 * 109.47259 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47365 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47365 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47192 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46881 * 305.00019 * 7 6 5 9 9 F 1.39903 * 109.46974 * 64.99831 * 7 6 5 10 10 C 1.50695 * 109.46857 * 185.00111 * 7 6 5 11 11 O 1.21282 * 120.00337 * 314.99554 * 10 7 6 12 12 N 1.34776 * 120.00343 * 135.00310 * 10 7 6 13 13 C 1.47429 * 125.64194 * 0.03716 * 12 10 7 14 14 C 1.54909 * 104.82954 * 204.09530 * 13 12 10 15 15 C 1.55160 * 101.58268 * 322.98938 * 14 13 12 16 16 H 1.08995 * 110.87392 * 277.06960 * 15 14 13 17 17 N 1.46497 * 110.72089 * 153.86602 * 15 14 13 18 18 C 1.46502 * 120.00125 * 306.47960 * 17 15 14 19 19 C 1.36940 * 120.00104 * 126.75415 * 17 15 14 20 20 H 1.07996 * 119.99758 * 23.08453 * 19 17 15 21 21 C 1.38809 * 119.99706 * 203.08457 * 19 17 15 22 22 N 1.31614 * 120.00579 * 14.17005 * 21 19 17 23 23 Si 1.86806 * 119.99601 * 194.16244 * 21 19 17 24 24 H 1.48499 * 109.47008 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47017 * 120.00187 * 23 21 19 26 26 H 1.48496 * 109.47321 * 239.99959 * 23 21 19 27 27 C 1.47017 * 125.65610 * 179.97438 * 12 10 7 28 28 H 1.08995 * 109.47092 * 299.99534 * 1 2 3 29 29 H 1.09001 * 109.46815 * 59.99635 * 1 2 3 30 30 H 1.08998 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46885 * 240.00184 * 2 1 3 32 32 H 1.09001 * 109.46815 * 120.00365 * 2 1 3 33 33 H 1.09007 * 109.46777 * 59.99863 * 3 2 1 34 34 H 1.09003 * 109.47310 * 300.00439 * 3 2 1 35 35 H 1.08998 * 109.46971 * 59.99732 * 4 3 2 36 36 H 1.09001 * 109.46861 * 300.00402 * 4 3 2 37 37 H 1.09003 * 109.47321 * 59.99351 * 5 4 3 38 38 H 1.09003 * 109.46979 * 300.00366 * 5 4 3 39 39 H 1.08995 * 109.47031 * 60.00153 * 6 5 4 40 40 H 1.09001 * 109.46920 * 299.99508 * 6 5 4 41 41 H 1.09004 * 110.36823 * 322.93189 * 13 12 10 42 42 H 1.09004 * 110.36780 * 85.15117 * 13 12 10 43 43 H 1.09011 * 111.00339 * 204.91835 * 14 13 12 44 44 H 1.09000 * 111.00482 * 81.06480 * 14 13 12 45 45 H 1.09005 * 109.47066 * 95.17391 * 18 17 15 46 46 H 1.08991 * 109.47178 * 215.17694 * 18 17 15 47 47 H 1.08995 * 109.46867 * 335.17884 * 18 17 15 48 48 H 0.96998 * 120.00150 * 180.02562 * 22 21 19 49 49 H 1.09008 * 109.88000 * 59.55647 * 27 12 10 50 50 H 1.08999 * 110.01104 * 298.46561 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 6 6.1201 4.3274 0.0013 8 1 5.6855 4.8664 -0.8405 9 9 5.7500 4.9529 1.1967 10 6 7.6220 4.3291 -0.1226 11 8 8.2865 3.5659 0.5459 12 7 8.2269 5.1789 -0.9761 13 6 7.5441 6.1557 -1.8440 14 6 8.5329 6.4101 -3.0090 15 6 9.8985 6.3675 -2.2735 16 1 10.1222 7.3301 -1.8138 17 7 10.9696 5.9722 -3.1915 18 6 10.8457 4.7402 -3.9745 19 6 12.0890 6.7514 -3.3135 20 1 12.3713 7.4200 -2.5138 21 6 12.8609 6.6818 -4.4651 22 7 12.3849 6.0933 -5.5419 23 14 14.5752 7.4236 -4.4867 24 1 14.8724 8.0217 -3.1604 25 1 15.5701 6.3622 -4.7848 26 1 14.6460 8.4761 -5.5319 27 6 9.6767 5.2862 -1.1950 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9338 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 3.7163 3.3985 0.8912 38 1 3.7171 3.3990 -0.8887 39 1 5.9734 2.3715 -0.8889 40 1 5.9734 2.3707 0.8911 41 1 6.6107 5.7393 -2.2228 42 1 7.3527 7.0795 -1.2981 43 1 8.3624 7.3879 -3.4598 44 1 8.4672 5.6199 -3.7569 45 1 10.4454 4.9753 -4.9608 46 1 11.8267 4.2775 -4.0814 47 1 10.1727 4.0514 -3.4640 48 1 12.9245 6.0444 -6.3465 49 1 10.0710 4.3309 -1.5414 50 1 10.1730 5.5783 -0.2695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193478146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:27 Heat of formation + Delta-G solvation = -88.650195 kcal Electronic energy + Delta-G solvation = -26501.378294 eV Core-core repulsion = 22670.708423 eV Total energy + Delta-G solvation = -3830.669871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.95033 -39.81009 -37.59440 -36.88561 -34.88320 -34.23384 -31.82022 -30.72745 -29.83582 -28.32867 -26.73576 -26.07101 -24.14815 -22.81093 -22.40472 -21.34278 -21.23140 -19.41394 -19.21197 -17.64294 -17.12459 -16.74994 -16.16155 -15.90112 -15.66842 -15.12891 -14.69864 -14.46909 -14.21560 -13.97414 -13.64544 -13.52207 -13.41898 -13.21971 -12.87499 -12.67058 -12.60759 -12.42331 -12.21118 -11.97875 -11.83742 -11.68639 -11.49864 -11.31667 -11.19795 -11.01658 -10.99902 -10.83572 -10.77059 -10.72533 -10.65309 -10.53582 -10.28250 -9.93390 -9.91120 -9.62771 -8.63369 -8.47229 -6.86652 -5.81488 -3.28901 2.49956 2.92306 3.33877 3.41937 3.43798 4.17022 4.24331 4.42337 4.45177 4.51082 4.58689 4.71505 4.74252 4.92062 4.94851 5.02595 5.15284 5.19700 5.24886 5.30510 5.39348 5.47418 5.48793 5.50036 5.52857 5.58733 5.64497 5.67917 5.73855 5.80188 5.83263 5.85646 5.92588 5.96295 6.06345 6.10002 6.22853 6.30513 6.43666 6.56079 6.71805 6.79884 7.28071 7.57255 7.64679 7.74068 8.10773 8.30353 9.13530 9.75960 10.24504 11.23428 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.026751 B = 0.002181 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.454055 B =12837.380058 C =13269.277132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.084 3.916 8 H 0.099 0.901 9 F -0.192 7.192 10 C 0.502 3.498 11 O -0.529 6.529 12 N -0.604 5.604 13 C 0.093 3.907 14 C -0.149 4.149 15 C 0.173 3.827 16 H 0.081 0.919 17 N -0.585 5.585 18 C 0.159 3.841 19 C -0.262 4.262 20 H 0.071 0.929 21 C 0.006 3.994 22 N -0.903 5.903 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.084 3.916 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.034 0.966 46 H 0.041 0.959 47 H 0.001 0.999 48 H 0.253 0.747 49 H 0.074 0.926 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.247 -6.350 8.234 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.174 4.174 7 C 0.045 3.955 8 H 0.117 0.883 9 F -0.173 7.173 10 C 0.287 3.713 11 O -0.405 6.405 12 N -0.337 5.337 13 C -0.030 4.030 14 C -0.189 4.189 15 C 0.062 3.938 16 H 0.099 0.901 17 N -0.306 5.306 18 C 0.015 3.985 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.217 1.217 27 C -0.040 4.040 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.020 0.980 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.796 -6.822 8.478 23.471 hybrid contribution 0.914 0.463 -0.146 1.035 sum -19.882 -6.360 8.332 22.475 Atomic orbital electron populations 1.21782 0.95995 1.01513 1.01772 1.21549 0.95769 0.97046 1.02044 1.21627 0.95350 0.96708 1.02109 1.21588 0.95341 0.96393 1.02410 1.21599 0.93864 0.97551 1.02710 1.22066 0.96547 0.93682 1.05134 1.21639 0.92353 0.96056 0.85448 0.88280 1.92863 1.92059 1.83976 1.48380 1.20547 0.89899 0.80698 0.80154 1.90718 1.66111 1.39557 1.44145 1.48603 1.09243 1.36085 1.39811 1.22506 0.96428 0.91963 0.92061 1.23369 0.96081 1.02911 0.96582 1.21311 0.87822 0.94933 0.89699 0.90117 1.43870 1.16852 1.23377 1.46459 1.20794 0.98471 0.85535 0.93748 1.19258 1.00312 1.20057 0.99507 0.91148 1.25024 0.99545 0.99932 0.94832 1.70074 1.35910 1.47427 1.01352 0.86173 0.84323 0.78411 0.77539 1.20211 1.21544 1.21676 1.22900 0.78410 1.02387 1.00332 0.92801 0.92780 0.92886 0.92039 0.92070 0.91993 0.91976 0.91789 0.91779 0.91225 0.91625 0.89745 0.89455 0.91182 0.91105 0.90051 0.90408 0.94747 0.94007 0.98030 0.93676 0.90803 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.80 5.21 -26.73 -0.14 -0.94 16 4 C -0.12 -0.89 5.21 -26.74 -0.14 -1.02 16 5 C -0.12 -0.97 5.13 -26.74 -0.14 -1.11 16 6 C -0.14 -1.41 4.69 -26.73 -0.13 -1.54 16 7 C 0.08 1.01 3.54 -27.88 -0.10 0.91 16 8 H 0.10 0.93 6.11 -51.93 -0.32 0.61 16 9 F -0.19 -2.58 16.75 2.25 0.04 -2.54 16 10 C 0.50 8.02 7.19 -10.99 -0.08 7.94 16 11 O -0.53 -10.41 16.93 5.56 0.09 -10.31 16 12 N -0.60 -9.49 3.33 -170.52 -0.57 -10.06 16 13 C 0.09 1.19 6.56 -2.53 -0.02 1.17 16 14 C -0.15 -2.35 6.62 -24.58 -0.16 -2.52 16 15 C 0.17 3.31 3.44 -66.10 -0.23 3.08 16 16 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 17 N -0.59 -13.95 2.93 -171.40 -0.50 -14.45 16 18 C 0.16 3.76 7.46 59.85 0.45 4.21 16 19 C -0.26 -6.93 9.59 -15.06 -0.14 -7.07 16 20 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 21 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 22 N -0.90 -25.54 10.80 55.49 0.60 -24.94 16 23 Si 0.91 21.35 29.58 -169.99 -5.03 16.32 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.08 1.53 6.39 -3.07 -0.02 1.51 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 41 H 0.07 0.70 6.73 -51.93 -0.35 0.35 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 44 H 0.08 1.33 7.07 -51.93 -0.37 0.96 16 45 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 46 H 0.04 1.08 7.38 -51.93 -0.38 0.69 16 47 H 0.00 0.03 6.59 -51.93 -0.34 -0.32 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 1.50 6.48 -51.92 -0.34 1.16 16 50 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -30.54 395.38 -9.32 -39.85 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -9.19 Total: -3.06 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.72 Total: 3.23 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.47 Total: -49.45 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.54 -9.32 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193478146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.796 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds