Wall clock time and date at job start Tue Mar 31 2020 11:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 C 1.53005 * 109.46959 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47001 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46959 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47001 * 304.99709 * 7 6 5 9 9 F 1.39900 * 109.47107 * 64.99939 * 7 6 5 10 10 C 1.50701 * 109.46853 * 184.99596 * 7 6 5 11 11 O 1.21278 * 120.00180 * 315.00686 * 10 7 6 12 12 N 1.34780 * 119.99791 * 134.99690 * 10 7 6 13 13 C 1.47022 * 125.64721 * 0.02562 * 12 10 7 14 14 C 1.54325 * 107.27026 * 181.01931 * 13 12 10 15 15 C 1.55156 * 102.94051 * 22.19393 * 14 13 12 16 16 H 1.09013 * 111.00124 * 82.60990 * 15 14 13 17 17 N 1.46497 * 111.00756 * 206.41844 * 15 14 13 18 18 C 1.46506 * 119.99670 * 58.54957 * 17 15 14 19 19 C 1.36935 * 120.00452 * 238.54832 * 17 15 14 20 20 H 1.07993 * 120.00091 * 328.73815 * 19 17 15 21 21 C 1.38812 * 119.99857 * 148.73113 * 19 17 15 22 22 N 1.31619 * 120.00029 * 153.56278 * 21 19 17 23 23 Si 1.86807 * 120.00260 * 333.56377 * 21 19 17 24 24 H 1.48499 * 109.46845 * 94.77323 * 23 21 19 25 25 H 1.48496 * 109.46992 * 214.77038 * 23 21 19 26 26 H 1.48493 * 109.46756 * 334.77324 * 23 21 19 27 27 C 1.47425 * 125.64702 * 179.71962 * 12 10 7 28 28 H 1.08997 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46630 * 300.00364 * 1 2 3 30 30 H 1.08997 * 109.47223 * 59.99489 * 1 2 3 31 31 H 1.08998 * 109.46835 * 240.00091 * 2 1 3 32 32 H 1.08992 * 109.46922 * 119.99840 * 2 1 3 33 33 H 1.08998 * 109.47296 * 60.00373 * 3 2 1 34 34 H 1.09003 * 109.46938 * 300.00113 * 3 2 1 35 35 H 1.09003 * 109.46912 * 59.99434 * 4 3 2 36 36 H 1.09005 * 109.46402 * 299.99949 * 4 3 2 37 37 H 1.09003 * 109.46935 * 299.99762 * 5 4 3 38 38 H 1.08998 * 109.47258 * 59.99996 * 5 4 3 39 39 H 1.09001 * 109.46591 * 299.99485 * 6 5 4 40 40 H 1.08998 * 109.47118 * 59.99910 * 6 5 4 41 41 H 1.08991 * 109.88591 * 300.44038 * 13 12 10 42 42 H 1.08999 * 109.87827 * 61.60864 * 13 12 10 43 43 H 1.09002 * 110.71789 * 140.55542 * 14 13 12 44 44 H 1.08998 * 110.72246 * 263.65692 * 14 13 12 45 45 H 1.09003 * 109.46921 * 95.57556 * 18 17 15 46 46 H 1.08995 * 109.46966 * 215.57762 * 18 17 15 47 47 H 1.09006 * 109.47053 * 335.57735 * 18 17 15 48 48 H 0.97001 * 120.00599 * 180.02562 * 22 21 19 49 49 H 1.09004 * 110.36530 * 274.74879 * 27 12 10 50 50 H 1.09000 * 110.36611 * 37.07138 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6101 2.8850 -0.0013 7 6 6.1200 4.3276 -0.0013 8 1 5.6854 4.8665 -0.8431 9 9 5.7499 4.9530 1.1941 10 6 7.6220 4.3294 -0.1250 11 8 8.2864 3.5661 0.5434 12 7 8.2268 5.1791 -0.9787 13 6 7.5459 6.1529 -1.8446 14 6 8.6352 6.8816 -2.6595 15 6 9.8238 5.8851 -2.6197 16 1 9.7127 5.1138 -3.3820 17 7 11.1017 6.5858 -2.7682 18 6 11.4804 7.6292 -1.8119 19 6 11.9423 6.2657 -3.8007 20 1 11.9673 5.2562 -4.1835 21 6 12.7622 7.2388 -4.3554 22 7 13.8908 6.8943 -4.9385 23 14 12.2639 9.0374 -4.2744 24 1 12.8981 9.6739 -3.0921 25 1 12.7107 9.7309 -5.5091 26 1 10.7869 9.1369 -4.1575 27 6 9.6809 5.2904 -1.1941 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.7163 3.3985 -0.8913 38 1 3.7171 3.3991 0.8887 39 1 5.9733 2.3717 0.8890 40 1 5.9734 2.3708 -0.8910 41 1 6.8626 5.6359 -2.5182 42 1 6.9967 6.8705 -1.2350 43 1 8.3042 7.0463 -3.6849 44 1 8.9041 7.8258 -2.1860 45 1 12.1140 7.1986 -1.0364 46 1 12.0261 8.4170 -2.3311 47 1 10.5829 8.0480 -1.3568 48 1 14.4640 7.5743 -5.3258 49 1 10.1238 5.9587 -0.4556 50 1 10.1480 4.3068 -1.1453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193478148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:30 Heat of formation + Delta-G solvation = -80.792313 kcal Electronic energy + Delta-G solvation = -26493.445468 eV Core-core repulsion = 22663.116341 eV Total energy + Delta-G solvation = -3830.329127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.01401 -39.91944 -37.75246 -36.93099 -35.10609 -34.27635 -31.98074 -30.92494 -30.20280 -28.60447 -26.94103 -26.24955 -24.27025 -22.89450 -22.52315 -21.38102 -21.26033 -19.56322 -19.33994 -17.70843 -17.13227 -16.78091 -16.34844 -16.09760 -15.69166 -15.35726 -15.01027 -14.62975 -14.25254 -14.02650 -13.84788 -13.51390 -13.48678 -13.26091 -13.09226 -12.88265 -12.75089 -12.54100 -12.35250 -12.23092 -12.04688 -12.01084 -11.72827 -11.59342 -11.38748 -11.25272 -11.07502 -11.01408 -10.91000 -10.80758 -10.76448 -10.59841 -10.26258 -10.02896 -9.72386 -9.58395 -8.67809 -8.51194 -7.05958 -6.08795 -3.44066 2.40459 2.81973 3.25290 3.41225 3.44750 4.09835 4.18128 4.40769 4.44218 4.46752 4.54923 4.67181 4.68141 4.70589 4.91054 4.98144 5.03700 5.07072 5.13354 5.19682 5.25014 5.33310 5.36244 5.46173 5.48378 5.54470 5.55737 5.61511 5.61916 5.70584 5.76643 5.78114 5.81659 5.92514 6.01731 6.02752 6.06149 6.10490 6.20908 6.28472 6.34672 6.53168 6.63382 6.69986 7.47504 7.87917 8.01412 8.24515 8.84400 9.60777 9.96296 11.06490 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.028065 B = 0.002197 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.444382 B =12740.745221 C =12910.299214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.085 3.915 8 H 0.099 0.901 9 F -0.192 7.192 10 C 0.504 3.496 11 O -0.526 6.526 12 N -0.607 5.607 13 C 0.097 3.903 14 C -0.157 4.157 15 C 0.173 3.827 16 H 0.090 0.910 17 N -0.594 5.594 18 C 0.107 3.893 19 C -0.276 4.276 20 H 0.084 0.916 21 C 0.035 3.965 22 N -0.892 5.892 23 Si 0.882 3.118 24 H -0.286 1.286 25 H -0.303 1.303 26 H -0.271 1.271 27 C 0.086 3.914 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.023 0.977 46 H 0.041 0.959 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.401 -6.922 8.199 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.174 4.174 7 C 0.046 3.954 8 H 0.117 0.883 9 F -0.172 7.172 10 C 0.289 3.711 11 O -0.402 6.402 12 N -0.341 5.341 13 C -0.027 4.027 14 C -0.198 4.198 15 C 0.064 3.936 16 H 0.108 0.892 17 N -0.316 5.316 18 C -0.037 4.037 19 C -0.404 4.404 20 H 0.101 0.899 21 C -0.166 4.166 22 N -0.533 5.533 23 Si 0.713 3.287 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.197 1.197 27 C -0.037 4.037 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.888 -7.315 8.521 26.396 hybrid contribution -0.194 1.332 0.026 1.346 sum -24.081 -5.983 8.547 26.244 Atomic orbital electron populations 1.21783 0.95987 1.01531 1.01776 1.21548 0.95782 0.97028 1.02054 1.21629 0.95339 0.96728 1.02110 1.21590 0.95359 0.96357 1.02422 1.21601 0.93837 0.97586 1.02721 1.22070 0.96586 0.93591 1.05178 1.21621 0.92204 0.96121 0.85449 0.88331 1.92867 1.92038 1.83972 1.48365 1.20554 0.89943 0.80553 0.80014 1.90726 1.66121 1.39495 1.43861 1.48562 1.09219 1.36288 1.40006 1.22170 0.96379 0.91193 0.92925 1.23305 0.96185 1.00195 1.00078 1.21602 0.85097 0.93617 0.93322 0.89238 1.43981 1.16100 1.42328 1.29181 1.21368 0.97532 0.91961 0.92864 1.18788 1.15585 0.95424 1.10564 0.89878 1.25304 0.96072 0.97947 0.97238 1.69916 1.09399 1.34004 1.39953 0.86922 0.79491 0.86852 0.75451 1.21476 1.23099 1.19657 1.23021 0.78596 1.02332 0.99785 0.92866 0.92802 0.92777 0.92034 0.92057 0.91984 0.91990 0.91785 0.91755 0.91615 0.91230 0.89414 0.89690 0.91267 0.91634 0.89950 0.90642 0.95926 0.94107 0.94504 0.92566 0.91224 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.83 5.21 -26.73 -0.14 -0.97 16 5 C -0.12 -0.91 5.13 -26.73 -0.14 -1.05 16 6 C -0.14 -1.32 4.69 -26.73 -0.13 -1.44 16 7 C 0.09 0.97 3.54 -27.88 -0.10 0.87 16 8 H 0.10 0.85 6.68 -51.93 -0.35 0.50 16 9 F -0.19 -2.49 16.74 2.25 0.04 -2.45 16 10 C 0.50 7.62 7.19 -10.98 -0.08 7.54 16 11 O -0.53 -9.89 16.86 5.56 0.09 -9.80 16 12 N -0.61 -8.95 3.32 -170.38 -0.57 -9.52 16 13 C 0.10 1.15 5.95 -3.06 -0.02 1.13 16 14 C -0.16 -2.32 6.48 -24.90 -0.16 -2.48 16 15 C 0.17 3.14 3.55 -65.67 -0.23 2.91 16 16 H 0.09 1.65 7.96 -51.92 -0.41 1.24 16 17 N -0.59 -13.35 2.62 -170.89 -0.45 -13.80 16 18 C 0.11 2.25 8.36 59.85 0.50 2.75 16 19 C -0.28 -7.39 9.89 -15.06 -0.15 -7.54 16 20 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 21 C 0.04 0.99 5.29 -17.43 -0.09 0.90 16 22 N -0.89 -26.54 13.97 55.49 0.78 -25.76 16 23 Si 0.88 21.46 25.09 -169.99 -4.26 17.20 16 24 H -0.29 -6.83 6.61 56.52 0.37 -6.46 16 25 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 27 C 0.09 1.48 6.47 -2.41 -0.02 1.47 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 39 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.16 6.38 -51.93 -0.33 0.83 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.93 2.54 -51.93 -0.13 0.80 16 47 H 0.04 0.66 6.33 -51.93 -0.33 0.33 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.07 1.24 7.04 -51.93 -0.37 0.87 16 50 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -31.25 391.39 -8.23 -39.48 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -9.08 Total: -3.05 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.68 Total: 1.81 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.24 Total: -49.08 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.26 Total: 17.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.25 -8.23 -39.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193478148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.317 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds