Wall clock time and date at job start Tue Mar 31 2020 11:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 C 1.53005 * 109.46959 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47001 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46959 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47001 * 304.99709 * 7 6 5 9 9 F 1.39900 * 109.47107 * 64.99939 * 7 6 5 10 10 C 1.50701 * 109.46853 * 184.99596 * 7 6 5 11 11 O 1.21278 * 120.00180 * 315.00686 * 10 7 6 12 12 N 1.34780 * 119.99791 * 134.99690 * 10 7 6 13 13 C 1.47022 * 125.64721 * 0.02562 * 12 10 7 14 14 C 1.54325 * 107.27026 * 181.01931 * 13 12 10 15 15 C 1.55156 * 102.94051 * 22.19393 * 14 13 12 16 16 H 1.09013 * 111.00124 * 82.60990 * 15 14 13 17 17 N 1.46497 * 111.00756 * 206.41844 * 15 14 13 18 18 C 1.46506 * 119.99670 * 58.54957 * 17 15 14 19 19 C 1.36935 * 120.00452 * 238.54832 * 17 15 14 20 20 H 1.07993 * 120.00091 * 328.73815 * 19 17 15 21 21 C 1.38812 * 119.99857 * 148.73113 * 19 17 15 22 22 N 1.31619 * 120.00029 * 153.56278 * 21 19 17 23 23 Si 1.86807 * 120.00260 * 333.56377 * 21 19 17 24 24 H 1.48499 * 109.46845 * 94.77323 * 23 21 19 25 25 H 1.48496 * 109.46992 * 214.77038 * 23 21 19 26 26 H 1.48493 * 109.46756 * 334.77324 * 23 21 19 27 27 C 1.47425 * 125.64702 * 179.71962 * 12 10 7 28 28 H 1.08997 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46630 * 300.00364 * 1 2 3 30 30 H 1.08997 * 109.47223 * 59.99489 * 1 2 3 31 31 H 1.08998 * 109.46835 * 240.00091 * 2 1 3 32 32 H 1.08992 * 109.46922 * 119.99840 * 2 1 3 33 33 H 1.08998 * 109.47296 * 60.00373 * 3 2 1 34 34 H 1.09003 * 109.46938 * 300.00113 * 3 2 1 35 35 H 1.09003 * 109.46912 * 59.99434 * 4 3 2 36 36 H 1.09005 * 109.46402 * 299.99949 * 4 3 2 37 37 H 1.09003 * 109.46935 * 299.99762 * 5 4 3 38 38 H 1.08998 * 109.47258 * 59.99996 * 5 4 3 39 39 H 1.09001 * 109.46591 * 299.99485 * 6 5 4 40 40 H 1.08998 * 109.47118 * 59.99910 * 6 5 4 41 41 H 1.08991 * 109.88591 * 300.44038 * 13 12 10 42 42 H 1.08999 * 109.87827 * 61.60864 * 13 12 10 43 43 H 1.09002 * 110.71789 * 140.55542 * 14 13 12 44 44 H 1.08998 * 110.72246 * 263.65692 * 14 13 12 45 45 H 1.09003 * 109.46921 * 95.57556 * 18 17 15 46 46 H 1.08995 * 109.46966 * 215.57762 * 18 17 15 47 47 H 1.09006 * 109.47053 * 335.57735 * 18 17 15 48 48 H 0.97001 * 120.00599 * 180.02562 * 22 21 19 49 49 H 1.09004 * 110.36530 * 274.74879 * 27 12 10 50 50 H 1.09000 * 110.36611 * 37.07138 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6101 2.8850 -0.0013 7 6 6.1200 4.3276 -0.0013 8 1 5.6854 4.8665 -0.8431 9 9 5.7499 4.9530 1.1941 10 6 7.6220 4.3294 -0.1250 11 8 8.2864 3.5661 0.5434 12 7 8.2268 5.1791 -0.9787 13 6 7.5459 6.1529 -1.8446 14 6 8.6352 6.8816 -2.6595 15 6 9.8238 5.8851 -2.6197 16 1 9.7127 5.1138 -3.3820 17 7 11.1017 6.5858 -2.7682 18 6 11.4804 7.6292 -1.8119 19 6 11.9423 6.2657 -3.8007 20 1 11.9673 5.2562 -4.1835 21 6 12.7622 7.2388 -4.3554 22 7 13.8908 6.8943 -4.9385 23 14 12.2639 9.0374 -4.2744 24 1 12.8981 9.6739 -3.0921 25 1 12.7107 9.7309 -5.5091 26 1 10.7869 9.1369 -4.1575 27 6 9.6809 5.2904 -1.1941 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.7163 3.3985 -0.8913 38 1 3.7171 3.3991 0.8887 39 1 5.9733 2.3717 0.8890 40 1 5.9734 2.3708 -0.8910 41 1 6.8626 5.6359 -2.5182 42 1 6.9967 6.8705 -1.2350 43 1 8.3042 7.0463 -3.6849 44 1 8.9041 7.8258 -2.1860 45 1 12.1140 7.1986 -1.0364 46 1 12.0261 8.4170 -2.3311 47 1 10.5829 8.0480 -1.3568 48 1 14.4640 7.5743 -5.3258 49 1 10.1238 5.9587 -0.4556 50 1 10.1480 4.3068 -1.1453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193478148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:29 Heat of formation + Delta-G solvation = -98.392025 kcal Electronic energy + Delta-G solvation = -26494.208649 eV Core-core repulsion = 22663.116341 eV Total energy + Delta-G solvation = -3831.092308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.96597 -41.15349 -39.11221 -37.50934 -36.73301 -34.91455 -33.84916 -32.05050 -31.23151 -29.80552 -28.18154 -27.66843 -25.50900 -24.18083 -23.56140 -21.96737 -21.80897 -21.06457 -20.43090 -19.03600 -18.76731 -17.88245 -17.70748 -17.05418 -16.76245 -16.44493 -16.30384 -15.48329 -15.35284 -15.09405 -14.88021 -14.75221 -14.64960 -14.46105 -14.36024 -14.08814 -14.02213 -13.73618 -13.46821 -13.36147 -13.11075 -13.09011 -12.69001 -12.50421 -12.45971 -12.34278 -12.28852 -12.08350 -11.99657 -11.78196 -11.59187 -11.57824 -11.42031 -11.40283 -11.31430 -10.87202 -10.62112 -9.82046 -8.92900 -8.21824 -5.53845 1.24069 1.32920 1.43989 1.55289 1.67400 2.42524 2.98689 3.08751 3.30013 3.40636 3.61728 3.75433 3.81577 3.86785 4.02365 4.08957 4.12361 4.18392 4.27837 4.33463 4.35834 4.44081 4.49097 4.60311 4.62916 4.65753 4.70645 4.78038 4.81379 4.91428 4.92012 4.95503 4.96806 4.98140 5.07525 5.11084 5.17280 5.22781 5.26011 5.28960 5.30989 5.41201 5.50929 5.55724 5.86181 6.12940 6.32690 6.83144 6.90578 7.58703 7.97093 8.97716 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.028065 B = 0.002197 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.444382 B =12740.745221 C =12910.299214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.134 4.134 7 C 0.093 3.907 8 H 0.139 0.861 9 F -0.200 7.200 10 C 0.497 3.503 11 O -0.574 6.574 12 N -0.606 5.606 13 C 0.098 3.902 14 C -0.147 4.147 15 C 0.166 3.834 16 H 0.079 0.921 17 N -0.607 5.607 18 C 0.105 3.895 19 C -0.266 4.266 20 H 0.046 0.954 21 C -0.024 4.024 22 N -0.945 5.945 23 Si 0.951 3.049 24 H -0.278 1.278 25 H -0.312 1.312 26 H -0.249 1.249 27 C 0.095 3.905 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.018 0.982 46 H 0.027 0.973 47 H 0.073 0.927 48 H 0.263 0.737 49 H 0.064 0.936 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.000 -5.274 8.455 29.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.172 4.172 7 C 0.054 3.946 8 H 0.157 0.843 9 F -0.181 7.181 10 C 0.285 3.715 11 O -0.453 6.453 12 N -0.339 5.339 13 C -0.023 4.023 14 C -0.187 4.187 15 C 0.058 3.942 16 H 0.097 0.903 17 N -0.329 5.329 18 C -0.039 4.039 19 C -0.395 4.395 20 H 0.063 0.937 21 C -0.221 4.221 22 N -0.589 5.589 23 Si 0.780 3.220 24 H -0.206 1.206 25 H -0.241 1.241 26 H -0.173 1.173 27 C -0.030 4.030 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.561 -5.654 8.798 29.478 hybrid contribution 0.957 0.667 -0.004 1.167 sum -26.604 -4.987 8.794 28.460 Atomic orbital electron populations 1.21783 0.95551 1.01793 1.01946 1.21560 0.96194 0.96952 1.01885 1.21598 0.94679 0.96845 1.02358 1.21576 0.95897 0.96046 1.02152 1.21563 0.91949 0.98022 1.03465 1.22074 0.98106 0.92551 1.04481 1.21769 0.89050 0.97511 0.86229 0.84350 1.92856 1.91773 1.84177 1.49263 1.21372 0.91614 0.79516 0.79025 1.90707 1.67567 1.41344 1.45673 1.48634 1.08131 1.36768 1.40339 1.22405 0.95659 0.91186 0.93095 1.23172 0.94893 0.99081 1.01560 1.21665 0.84875 0.94249 0.93391 0.90321 1.43995 1.17501 1.43041 1.28403 1.21422 0.99046 0.91138 0.92256 1.18677 1.15916 0.93940 1.10973 0.93664 1.25957 0.95851 1.02514 0.97738 1.70050 1.10884 1.35412 1.42513 0.85803 0.80175 0.80984 0.75043 1.20632 1.24117 1.17292 1.22686 0.80624 1.00700 0.98986 0.92615 0.92729 0.92495 0.92063 0.92423 0.92039 0.91378 0.91604 0.92587 0.89702 0.91560 0.91536 0.89152 0.87717 0.88690 0.88724 0.90633 0.96380 0.95547 0.90855 0.92763 0.91814 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.35 5.93 30.60 0.18 -1.17 16 3 C -0.12 -1.23 5.21 30.60 0.16 -1.07 16 4 C -0.12 -1.43 5.21 30.59 0.16 -1.27 16 5 C -0.11 -1.39 5.13 30.59 0.16 -1.24 16 6 C -0.13 -2.32 4.69 30.60 0.14 -2.18 16 7 C 0.09 1.81 3.54 29.85 0.11 1.92 16 8 H 0.14 1.61 6.68 -2.39 -0.02 1.60 16 9 F -0.20 -4.63 16.74 44.97 0.75 -3.88 16 10 C 0.50 14.17 7.19 87.66 0.63 14.80 16 11 O -0.57 -21.67 16.86 -3.02 -0.05 -21.72 16 12 N -0.61 -16.35 3.32 -811.36 -2.70 -19.05 16 13 C 0.10 1.85 5.95 86.73 0.52 2.36 16 14 C -0.15 -3.76 6.48 31.78 0.21 -3.55 16 15 C 0.17 5.83 3.55 46.46 0.17 5.99 16 16 H 0.08 2.90 7.96 -2.38 -0.02 2.88 16 17 N -0.61 -26.91 2.62 -694.58 -1.82 -28.73 16 18 C 0.11 4.24 8.36 127.77 1.07 5.31 16 19 C -0.27 -14.57 9.89 84.03 0.83 -13.73 16 20 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 21 C -0.02 -1.35 5.29 84.86 0.45 -0.91 16 22 N -0.94 -58.07 13.97 21.65 0.30 -57.76 16 23 Si 0.95 44.21 25.09 68.60 1.72 45.93 16 24 H -0.28 -12.48 6.61 99.48 0.66 -11.82 16 25 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 26 H -0.25 -10.56 7.11 99.48 0.71 -9.86 16 27 C 0.09 3.20 6.47 86.93 0.56 3.76 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.89 7.93 -2.39 -0.02 0.87 16 39 H 0.07 1.44 8.05 -2.39 -0.02 1.42 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.10 1.33 7.83 -2.39 -0.02 1.31 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 1.96 6.38 -2.39 -0.02 1.95 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.03 1.15 2.54 -2.39 -0.01 1.15 16 47 H 0.07 2.39 6.33 -2.38 -0.02 2.38 16 48 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.06 2.22 7.04 -2.38 -0.02 2.20 16 50 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -70.90 391.39 5.10 -65.80 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.84 Total: 11.11 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.05 Total: 8.30 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -4.21 Total: -105.54 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.75 Total: -3.88 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.72 Total: 45.93 kcal Total: -70.90 5.10 -65.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193478148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.587 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds