Wall clock time and date at job start Tue Mar 31 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46759 * 2 1 4 4 C 1.53001 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47527 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47410 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47410 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46681 * 54.99941 * 7 6 5 9 9 F 1.39904 * 109.46842 * 295.00268 * 7 6 5 10 10 C 1.50698 * 109.47322 * 174.99826 * 7 6 5 11 11 O 1.21278 * 120.00114 * 45.45896 * 10 7 6 12 12 N 1.34771 * 119.99969 * 225.45581 * 10 7 6 13 13 C 1.48214 * 119.96880 * 355.08116 * 12 10 7 14 14 C 1.47143 * 110.34478 * 102.47277 * 13 12 10 15 15 C 1.53792 * 111.84104 * 58.29108 * 14 13 12 16 16 N 1.43464 * 107.96536 * 281.67357 * 15 14 13 17 17 C 1.36935 * 118.93643 * 273.61334 * 16 15 14 18 18 H 1.08004 * 120.00373 * 23.09315 * 17 16 15 19 19 C 1.38809 * 119.99982 * 203.09982 * 17 16 15 20 20 N 1.31618 * 120.00058 * 34.51954 * 19 17 16 21 21 Si 1.86806 * 119.99980 * 214.52187 * 19 17 16 22 22 H 1.48496 * 109.47068 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47099 * 60.00003 * 21 19 17 24 24 H 1.48503 * 109.47127 * 299.99805 * 21 19 17 25 25 C 1.48850 * 122.12215 * 93.88649 * 16 15 14 26 26 C 1.43616 * 119.97015 * 175.06036 * 12 10 7 27 27 H 1.08994 * 109.47166 * 60.00502 * 1 2 3 28 28 H 1.09000 * 109.46746 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46826 * 300.00078 * 1 2 3 30 30 H 1.08993 * 109.47330 * 239.99933 * 2 1 3 31 31 H 1.09002 * 109.46918 * 119.99640 * 2 1 3 32 32 H 1.08996 * 109.47515 * 60.00344 * 3 2 1 33 33 H 1.09002 * 109.47112 * 299.99522 * 3 2 1 34 34 H 1.09002 * 109.47189 * 59.99793 * 4 3 2 35 35 H 1.09003 * 109.47266 * 300.00271 * 4 3 2 36 36 H 1.09002 * 109.47051 * 59.99713 * 5 4 3 37 37 H 1.09002 * 109.46853 * 299.99889 * 5 4 3 38 38 H 1.09002 * 109.47410 * 59.99734 * 6 5 4 39 39 H 1.09003 * 109.47162 * 300.00140 * 6 5 4 40 40 H 1.08996 * 109.32857 * 342.19976 * 13 12 10 41 41 H 1.09007 * 109.18106 * 222.64369 * 13 12 10 42 42 H 1.09001 * 109.00024 * 297.69113 * 14 13 12 43 43 H 1.08996 * 109.01053 * 178.90337 * 14 13 12 44 44 H 1.08996 * 109.76187 * 162.05097 * 15 14 13 45 45 H 1.09003 * 109.80612 * 41.31508 * 15 14 13 46 46 H 0.96993 * 119.99824 * 5.77430 * 20 19 17 47 47 H 1.09001 * 109.48035 * 80.34892 * 25 16 15 48 48 H 1.09008 * 109.48095 * 200.38669 * 25 16 15 49 49 H 1.08994 * 108.87385 * 31.46491 * 26 12 10 50 50 H 1.09003 * 108.87822 * 149.90635 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 6 6.1200 4.3276 0.0000 8 1 5.6853 4.8666 0.8418 9 9 5.7498 4.9530 -1.1954 10 6 7.6219 4.3294 0.1239 11 8 8.2869 3.5720 -0.5506 12 7 8.2261 5.1728 0.9841 13 6 7.4233 6.1726 1.7275 14 6 7.2120 5.7299 3.1148 15 6 8.5425 5.5022 3.8517 16 7 9.0704 4.2363 3.4309 17 6 8.6683 3.1011 4.0826 18 1 7.7304 3.0891 4.6179 19 6 9.4663 1.9656 4.0553 20 7 10.7773 2.0826 4.0503 21 14 8.6796 0.2716 4.0258 22 1 9.7410 -0.7667 3.9984 23 1 7.8295 0.1417 2.8152 24 1 7.8430 0.0930 5.2397 25 6 10.0456 4.1178 2.3126 26 6 9.6470 5.1015 1.1800 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 3.7163 3.3995 0.8895 37 1 3.7171 3.3983 -0.8905 38 1 5.9734 2.3708 -0.8897 39 1 5.9733 2.3716 0.8902 40 1 6.4578 6.2966 1.2374 41 1 7.9518 7.1260 1.7298 42 1 6.6462 4.7982 3.1076 43 1 6.6373 6.4885 3.6459 44 1 8.3704 5.4904 4.9279 45 1 9.2450 6.2966 3.5997 46 1 11.1866 2.9562 4.1500 47 1 11.0448 4.3605 2.6744 48 1 10.0358 3.0978 1.9282 49 1 10.1153 4.7778 0.2505 50 1 10.0185 6.0947 1.4326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197843028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:37 Heat of formation + Delta-G solvation = -87.439949 kcal Electronic energy + Delta-G solvation = -28143.027970 eV Core-core repulsion = 24312.410579 eV Total energy + Delta-G solvation = -3830.617390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -47.75792 -39.81551 -37.23671 -36.66553 -34.65708 -34.02312 -32.53449 -31.25347 -30.32947 -28.07573 -26.51591 -25.43198 -23.97180 -23.08497 -21.92272 -21.11160 -20.95494 -19.82373 -18.78220 -17.57520 -17.13730 -16.75817 -16.04253 -15.78558 -15.30298 -14.77539 -14.39107 -14.36688 -14.24649 -13.99393 -13.68904 -13.51295 -13.40243 -13.13523 -12.85597 -12.78111 -12.47458 -12.45913 -12.26572 -11.94891 -11.75656 -11.44554 -11.30948 -11.08924 -11.05330 -10.88890 -10.78350 -10.70592 -10.65005 -10.52490 -10.42038 -10.35999 -10.24627 -10.00301 -9.52616 -9.31365 -8.26857 -8.22841 -6.94775 -6.14770 -3.18054 2.77555 3.22044 3.48061 3.55680 3.71064 4.34189 4.48831 4.60766 4.66457 4.74837 4.79262 4.92320 4.95775 5.02399 5.16489 5.21069 5.25847 5.37634 5.41881 5.46961 5.50700 5.59058 5.61572 5.68914 5.70646 5.74660 5.81907 5.89229 5.92514 5.94390 6.00485 6.04451 6.09366 6.16835 6.21173 6.22708 6.24855 6.31719 6.37106 6.63577 6.65277 6.80582 7.06514 7.11083 7.64702 8.02974 8.41401 8.54155 9.11939 9.83997 10.24169 11.14303 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004494 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.417797 B = 6229.667238 C = 7790.941595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.137 4.137 7 C 0.080 3.920 8 H 0.101 0.899 9 F -0.198 7.198 10 C 0.498 3.502 11 O -0.527 6.527 12 N -0.577 5.577 13 C 0.117 3.883 14 C -0.175 4.175 15 C 0.164 3.836 16 N -0.593 5.593 17 C -0.368 4.368 18 H 0.056 0.944 19 C -0.011 4.011 20 N -0.899 5.899 21 Si 1.044 2.956 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.141 3.859 26 C 0.096 3.904 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.032 0.968 46 H 0.268 0.732 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.860 5.580 -6.769 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.175 4.175 7 C 0.041 3.959 8 H 0.119 0.881 9 F -0.179 7.179 10 C 0.283 3.717 11 O -0.403 6.403 12 N -0.309 5.309 13 C -0.004 4.004 14 C -0.216 4.216 15 C 0.036 3.964 16 N -0.315 5.315 17 C -0.496 4.496 18 H 0.074 0.926 19 C -0.215 4.215 20 N -0.537 5.537 21 Si 0.874 3.126 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.015 3.985 26 C -0.029 4.029 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.149 3.572 -7.252 16.296 hybrid contribution -0.413 1.732 0.254 1.799 sum -14.562 5.304 -6.998 17.005 Atomic orbital electron populations 1.21778 0.96109 1.01420 1.01672 1.21552 0.95625 0.97153 1.02138 1.21614 0.95489 0.96609 1.01927 1.21598 0.95138 0.96530 1.02596 1.21568 0.94080 0.97454 1.02326 1.22053 0.96285 0.93656 1.05480 1.21750 0.92925 0.96249 0.84992 0.88106 1.92835 1.92261 1.84023 1.48743 1.20699 0.89951 0.80657 0.80376 1.90689 1.65917 1.39161 1.44514 1.47380 1.08301 1.34281 1.40910 1.20874 0.95239 0.91038 0.93298 1.21935 1.02590 1.01523 0.95544 1.20224 0.91575 0.88176 0.96432 1.43742 1.51468 1.02412 1.33900 1.19788 1.03728 0.91592 1.34520 0.92641 1.25592 0.94825 1.02328 0.98754 1.70815 1.10038 1.27004 1.45836 0.83840 0.75506 0.77001 0.76259 1.21108 1.22017 1.21996 1.22086 0.91627 0.98581 0.86188 1.21844 0.80113 1.00363 1.00618 0.92890 0.92939 0.92809 0.92087 0.91931 0.92029 0.92140 0.91836 0.91557 0.91734 0.91545 0.89699 0.89143 0.91016 0.91106 0.91167 0.92164 0.93388 0.95012 0.92140 0.94946 0.90989 0.90575 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 4 C -0.12 -1.33 5.21 -26.73 -0.14 -1.46 16 5 C -0.12 -1.36 5.13 -26.73 -0.14 -1.50 16 6 C -0.14 -2.03 4.70 -26.73 -0.13 -2.15 16 7 C 0.08 1.23 3.13 -27.88 -0.09 1.14 16 8 H 0.10 1.33 5.79 -51.93 -0.30 1.03 16 9 F -0.20 -3.08 16.75 2.25 0.04 -3.04 16 10 C 0.50 9.48 6.99 -10.99 -0.08 9.41 16 11 O -0.53 -11.93 16.13 5.56 0.09 -11.84 16 12 N -0.58 -10.23 2.46 -176.43 -0.43 -10.66 16 13 C 0.12 1.65 5.27 -5.91 -0.03 1.62 16 14 C -0.17 -2.71 5.64 -29.13 -0.16 -2.88 16 15 C 0.16 3.14 5.63 -5.24 -0.03 3.11 16 16 N -0.59 -13.92 2.42 -171.78 -0.42 -14.34 16 17 C -0.37 -9.89 9.06 -15.06 -0.14 -10.02 16 18 H 0.06 1.51 8.02 -52.48 -0.42 1.09 16 19 C -0.01 -0.31 4.37 -17.43 -0.08 -0.38 16 20 N -0.90 -26.60 12.63 55.49 0.70 -25.90 16 21 Si 1.04 25.40 30.03 -169.99 -5.11 20.29 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.14 3.25 5.19 -1.57 -0.01 3.24 16 26 C 0.10 1.79 5.30 -4.39 -0.02 1.77 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.75 7.94 -51.93 -0.41 0.33 16 38 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.07 0.85 5.80 -51.93 -0.30 0.55 16 41 H 0.07 0.86 8.05 -51.93 -0.42 0.45 16 42 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 45 H 0.03 0.56 7.59 -51.93 -0.39 0.16 16 46 H 0.27 7.95 7.00 -40.82 -0.29 7.66 16 47 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16 48 H 0.07 1.95 6.91 -51.92 -0.36 1.59 16 49 H 0.08 1.47 7.30 -51.93 -0.38 1.09 16 50 H 0.06 1.00 7.73 -51.93 -0.40 0.60 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -31.40 389.62 -9.39 -40.79 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -9.17 Total: 0.28 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.96 Total: -1.45 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.15 Total: -50.90 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.11 Total: 20.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.40 -9.39 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197843028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.647 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds