Wall clock time and date at job start Tue Mar 31 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46759 * 2 1 4 4 C 1.53001 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47527 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47410 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47410 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46681 * 54.99941 * 7 6 5 9 9 F 1.39904 * 109.46842 * 295.00268 * 7 6 5 10 10 C 1.50698 * 109.47322 * 174.99826 * 7 6 5 11 11 O 1.21278 * 120.00114 * 45.45896 * 10 7 6 12 12 N 1.34771 * 119.99969 * 225.45581 * 10 7 6 13 13 C 1.48214 * 119.96880 * 355.08116 * 12 10 7 14 14 C 1.47143 * 110.34478 * 102.47277 * 13 12 10 15 15 C 1.53792 * 111.84104 * 58.29108 * 14 13 12 16 16 N 1.43464 * 107.96536 * 281.67357 * 15 14 13 17 17 C 1.36935 * 118.93643 * 273.61334 * 16 15 14 18 18 H 1.08004 * 120.00373 * 23.09315 * 17 16 15 19 19 C 1.38809 * 119.99982 * 203.09982 * 17 16 15 20 20 N 1.31618 * 120.00058 * 34.51954 * 19 17 16 21 21 Si 1.86806 * 119.99980 * 214.52187 * 19 17 16 22 22 H 1.48496 * 109.47068 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47099 * 60.00003 * 21 19 17 24 24 H 1.48503 * 109.47127 * 299.99805 * 21 19 17 25 25 C 1.48850 * 122.12215 * 93.88649 * 16 15 14 26 26 C 1.43616 * 119.97015 * 175.06036 * 12 10 7 27 27 H 1.08994 * 109.47166 * 60.00502 * 1 2 3 28 28 H 1.09000 * 109.46746 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46826 * 300.00078 * 1 2 3 30 30 H 1.08993 * 109.47330 * 239.99933 * 2 1 3 31 31 H 1.09002 * 109.46918 * 119.99640 * 2 1 3 32 32 H 1.08996 * 109.47515 * 60.00344 * 3 2 1 33 33 H 1.09002 * 109.47112 * 299.99522 * 3 2 1 34 34 H 1.09002 * 109.47189 * 59.99793 * 4 3 2 35 35 H 1.09003 * 109.47266 * 300.00271 * 4 3 2 36 36 H 1.09002 * 109.47051 * 59.99713 * 5 4 3 37 37 H 1.09002 * 109.46853 * 299.99889 * 5 4 3 38 38 H 1.09002 * 109.47410 * 59.99734 * 6 5 4 39 39 H 1.09003 * 109.47162 * 300.00140 * 6 5 4 40 40 H 1.08996 * 109.32857 * 342.19976 * 13 12 10 41 41 H 1.09007 * 109.18106 * 222.64369 * 13 12 10 42 42 H 1.09001 * 109.00024 * 297.69113 * 14 13 12 43 43 H 1.08996 * 109.01053 * 178.90337 * 14 13 12 44 44 H 1.08996 * 109.76187 * 162.05097 * 15 14 13 45 45 H 1.09003 * 109.80612 * 41.31508 * 15 14 13 46 46 H 0.96993 * 119.99824 * 5.77430 * 20 19 17 47 47 H 1.09001 * 109.48035 * 80.34892 * 25 16 15 48 48 H 1.09008 * 109.48095 * 200.38669 * 25 16 15 49 49 H 1.08994 * 108.87385 * 31.46491 * 26 12 10 50 50 H 1.09003 * 108.87822 * 149.90635 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 6 6.1200 4.3276 0.0000 8 1 5.6853 4.8666 0.8418 9 9 5.7498 4.9530 -1.1954 10 6 7.6219 4.3294 0.1239 11 8 8.2869 3.5720 -0.5506 12 7 8.2261 5.1728 0.9841 13 6 7.4233 6.1726 1.7275 14 6 7.2120 5.7299 3.1148 15 6 8.5425 5.5022 3.8517 16 7 9.0704 4.2363 3.4309 17 6 8.6683 3.1011 4.0826 18 1 7.7304 3.0891 4.6179 19 6 9.4663 1.9656 4.0553 20 7 10.7773 2.0826 4.0503 21 14 8.6796 0.2716 4.0258 22 1 9.7410 -0.7667 3.9984 23 1 7.8295 0.1417 2.8152 24 1 7.8430 0.0930 5.2397 25 6 10.0456 4.1178 2.3126 26 6 9.6470 5.1015 1.1800 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 3.7163 3.3995 0.8895 37 1 3.7171 3.3983 -0.8905 38 1 5.9734 2.3708 -0.8897 39 1 5.9733 2.3716 0.8902 40 1 6.4578 6.2966 1.2374 41 1 7.9518 7.1260 1.7298 42 1 6.6462 4.7982 3.1076 43 1 6.6373 6.4885 3.6459 44 1 8.3704 5.4904 4.9279 45 1 9.2450 6.2966 3.5997 46 1 11.1866 2.9562 4.1500 47 1 11.0448 4.3605 2.6744 48 1 10.0358 3.0978 1.9282 49 1 10.1153 4.7778 0.2505 50 1 10.0185 6.0947 1.4326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197843028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:37 Heat of formation + Delta-G solvation = -103.730208 kcal Electronic energy + Delta-G solvation = -28143.734368 eV Core-core repulsion = 24312.410579 eV Total energy + Delta-G solvation = -3831.323789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.99484 -41.28157 -38.82531 -37.55272 -36.38011 -34.97397 -34.07347 -33.00342 -31.45352 -29.58248 -27.68550 -27.02214 -25.55611 -24.43125 -23.17539 -22.03448 -21.82761 -21.52879 -20.17853 -19.33818 -18.66963 -18.06889 -17.30364 -16.89378 -16.53813 -16.25961 -16.02273 -15.80990 -15.60175 -15.26367 -14.95144 -14.83459 -14.74131 -14.34846 -14.20397 -14.00714 -13.85653 -13.75294 -13.45564 -13.18806 -12.91632 -12.78671 -12.62992 -12.43943 -12.32607 -12.12516 -12.06676 -12.04081 -11.95663 -11.91805 -11.80853 -11.61296 -11.39457 -11.36386 -11.34992 -10.75430 -10.32579 -9.74988 -8.92011 -8.29721 -5.30004 1.30651 1.49010 1.57903 1.74051 1.87129 2.61712 3.09262 3.12394 3.35510 3.49010 3.55596 3.73341 3.89830 3.95972 4.07393 4.12087 4.12822 4.14737 4.32185 4.35454 4.40453 4.48078 4.55891 4.62142 4.63152 4.67330 4.77769 4.82928 4.88254 4.89969 4.92588 4.94250 4.99793 5.08134 5.12910 5.13580 5.17618 5.21896 5.26203 5.38118 5.43862 5.47603 5.52782 5.63955 5.89634 6.24550 6.38427 6.96689 7.10594 7.81441 8.23904 8.96736 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004494 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.417797 B = 6229.667238 C = 7790.941595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.113 4.113 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.135 4.135 7 C 0.091 3.909 8 H 0.133 0.867 9 F -0.195 7.195 10 C 0.484 3.516 11 O -0.576 6.576 12 N -0.578 5.578 13 C 0.110 3.890 14 C -0.160 4.160 15 C 0.153 3.847 16 N -0.605 5.605 17 C -0.357 4.357 18 H 0.052 0.948 19 C -0.065 4.065 20 N -0.932 5.932 21 Si 1.084 2.916 22 H -0.296 1.296 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.151 3.849 26 C 0.107 3.893 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.255 0.745 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.065 0.935 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.798 7.931 -6.779 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.151 4.151 4 C -0.160 4.160 5 C -0.145 4.145 6 C -0.173 4.173 7 C 0.052 3.948 8 H 0.151 0.849 9 F -0.176 7.176 10 C 0.270 3.730 11 O -0.456 6.456 12 N -0.309 5.309 13 C -0.010 4.010 14 C -0.201 4.201 15 C 0.027 3.973 16 N -0.328 5.328 17 C -0.487 4.487 18 H 0.070 0.930 19 C -0.263 4.263 20 N -0.573 5.573 21 Si 0.911 3.089 22 H -0.222 1.222 23 H -0.219 1.219 24 H -0.195 1.195 25 C 0.025 3.975 26 C -0.019 4.019 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.038 0.962 49 H 0.083 0.917 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.141 5.987 -7.235 19.544 hybrid contribution 0.521 1.078 0.290 1.232 sum -16.620 7.065 -6.945 19.348 Atomic orbital electron populations 1.21764 0.95072 1.01893 1.02081 1.21567 0.96556 0.96834 1.01759 1.21571 0.93911 0.97035 1.02572 1.21597 0.96538 0.96037 1.01781 1.21533 0.91304 0.98096 1.03539 1.22025 0.98683 0.93182 1.03448 1.21743 0.90242 0.96876 0.85961 0.84919 1.92843 1.91959 1.83897 1.48919 1.21513 0.91590 0.79935 0.79913 1.90664 1.67323 1.41073 1.46533 1.47626 1.08087 1.34487 1.40655 1.21245 0.96792 0.90995 0.91955 1.21717 1.00015 1.01805 0.96515 1.20515 0.93778 0.86612 0.96406 1.43918 1.51599 1.03317 1.33995 1.19987 1.02790 0.92800 1.33092 0.93043 1.26604 0.94850 1.05357 0.99524 1.70916 1.10986 1.26078 1.49332 0.83270 0.74817 0.73702 0.77120 1.22203 1.21895 1.19455 1.21826 0.91317 0.96972 0.87427 1.21598 0.81402 1.00717 0.98162 0.92338 0.92507 0.92520 0.92294 0.92587 0.91467 0.91309 0.92402 0.92772 0.90144 0.90507 0.91533 0.91487 0.87812 0.87830 0.93628 0.87887 0.94487 0.92881 0.93566 0.96287 0.96177 0.91699 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.13 -2.11 5.93 30.60 0.18 -1.93 16 3 C -0.11 -1.89 5.21 30.59 0.16 -1.73 16 4 C -0.12 -2.54 5.21 30.59 0.16 -2.38 16 5 C -0.11 -2.29 5.13 30.59 0.16 -2.13 16 6 C -0.14 -3.94 4.70 30.59 0.14 -3.79 16 7 C 0.09 2.60 3.13 29.85 0.09 2.69 16 8 H 0.13 2.95 5.79 -2.39 -0.01 2.94 16 9 F -0.20 -5.57 16.75 44.97 0.75 -4.82 16 10 C 0.48 18.07 6.99 87.66 0.61 18.68 16 11 O -0.58 -26.85 16.13 -3.02 -0.05 -26.90 16 12 N -0.58 -19.31 2.46 -830.51 -2.04 -21.36 16 13 C 0.11 2.56 5.27 84.23 0.44 3.00 16 14 C -0.16 -4.31 5.64 29.04 0.16 -4.15 16 15 C 0.15 5.50 5.63 87.21 0.49 5.99 16 16 N -0.60 -28.39 2.42 -697.40 -1.69 -30.08 16 17 C -0.36 -19.43 9.06 84.03 0.76 -18.66 16 18 H 0.05 2.80 8.02 -2.91 -0.02 2.78 16 19 C -0.06 -3.74 4.37 84.86 0.37 -3.37 16 20 N -0.93 -57.47 12.63 21.65 0.27 -57.20 16 21 Si 1.08 52.75 30.03 68.60 2.06 54.81 16 22 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.15 7.13 5.19 86.69 0.45 7.58 16 26 C 0.11 3.92 5.30 87.67 0.46 4.38 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.51 7.94 -2.39 -0.02 1.49 16 38 H 0.07 2.16 8.05 -2.39 -0.02 2.14 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.10 1.84 5.80 -2.39 -0.01 1.82 16 41 H 0.10 1.86 8.05 -2.38 -0.02 1.84 16 42 H 0.04 1.48 7.91 -2.39 -0.02 1.46 16 43 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.04 1.40 8.02 -2.39 -0.02 1.38 16 45 H 0.05 1.68 7.59 -2.39 -0.02 1.66 16 46 H 0.25 15.83 7.00 -92.71 -0.65 15.18 16 47 H 0.02 0.94 7.40 -2.39 -0.02 0.93 16 48 H 0.02 1.13 6.91 -2.38 -0.02 1.11 16 49 H 0.06 2.54 7.30 -2.39 -0.02 2.52 16 50 H 0.10 2.90 7.73 -2.39 -0.02 2.88 16 Total: -1.00 -72.57 389.62 5.68 -66.89 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.00 Total: 15.81 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.37 Total: 2.84 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -3.46 Total: -108.63 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.75 Total: -4.82 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.06 Total: 54.81 kcal Total: -72.57 5.68 -66.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197843028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.838 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds