Wall clock time and date at job start Tue Mar 31 2020 10:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00078 * 2 1 4 4 C 1.53003 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46961 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46961 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47005 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99934 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99816 * 180.02562 * 7 6 5 10 10 C 1.47505 * 118.75811 * 359.97438 * 9 7 6 11 11 C 1.53566 * 111.03437 * 221.60598 * 10 9 7 12 12 C 1.51535 * 109.57369 * 39.98650 * 11 10 9 13 13 O 1.42152 * 108.75353 * 268.59688 * 12 11 10 14 14 C 1.38020 * 119.44545 * 87.22711 * 13 12 11 15 15 H 1.09005 * 109.46518 * 56.57628 * 14 13 12 16 16 C 1.52991 * 109.47312 * 176.57247 * 14 13 12 17 17 N 1.46505 * 109.47310 * 300.00183 * 16 14 13 18 18 C 1.36941 * 120.00162 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99505 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00018 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99895 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47426 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47366 * 120.00318 * 22 20 18 25 25 H 1.48507 * 109.47264 * 239.99812 * 22 20 18 26 26 C 1.45116 * 118.75683 * 179.97438 * 9 7 6 27 27 H 1.08996 * 109.46996 * 300.00481 * 1 2 3 28 28 H 1.09003 * 109.46787 * 60.00360 * 1 2 3 29 29 H 1.08992 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47137 * 59.99844 * 3 2 1 31 31 H 1.09003 * 109.47063 * 299.99657 * 3 2 1 32 32 H 1.08991 * 109.46766 * 59.99974 * 4 3 2 33 33 H 1.08996 * 109.46769 * 300.00157 * 4 3 2 34 34 H 1.09005 * 109.46977 * 60.00316 * 5 4 3 35 35 H 1.08997 * 109.47208 * 300.00385 * 5 4 3 36 36 H 1.08999 * 109.46837 * 59.99926 * 6 5 4 37 37 H 1.09003 * 109.47069 * 300.00222 * 6 5 4 38 38 H 1.09004 * 109.16451 * 101.20939 * 10 9 7 39 39 H 1.08995 * 109.16784 * 342.01389 * 10 9 7 40 40 H 1.09005 * 109.45203 * 160.01311 * 11 10 9 41 41 H 1.08996 * 109.45484 * 279.95324 * 11 10 9 42 42 H 1.09003 * 109.59300 * 28.37417 * 12 11 10 43 43 H 1.09002 * 109.59241 * 148.81466 * 12 11 10 44 44 H 1.09009 * 109.47116 * 60.00175 * 16 14 13 45 45 H 1.09002 * 109.47278 * 180.02562 * 16 14 13 46 46 H 0.97000 * 120.00118 * 0.02562 * 17 16 14 47 47 H 0.97003 * 119.99597 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.46225 * 330.71696 * 26 9 7 49 49 H 1.09000 * 109.45344 * 210.74623 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6831 2.4615 0.0013 7 6 6.2960 3.8383 0.0013 8 8 5.5831 4.8194 -0.0001 9 7 7.6364 3.9791 0.0018 10 6 8.4773 2.7673 0.0030 11 6 9.6717 2.9260 0.9551 12 6 9.2246 3.6380 2.2159 13 8 9.4137 5.0362 2.0426 14 6 8.4146 5.7889 1.4593 15 1 7.4899 5.6641 2.0228 16 6 8.8192 7.2643 1.4634 17 7 9.0242 7.7107 2.8437 18 6 9.3945 9.0045 3.0971 19 1 9.5349 9.6959 2.2794 20 6 9.5882 9.4275 4.4048 21 7 9.4165 8.5849 5.4013 22 14 10.0926 11.1925 4.7505 23 1 10.2195 11.9313 3.4685 24 1 9.0626 11.8448 5.5983 25 1 11.3974 11.2048 5.4595 26 6 8.1978 5.3173 0.0012 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8574 0.6436 -0.8891 33 1 3.8567 0.6438 0.8908 34 1 3.8359 3.1238 0.8896 35 1 3.8365 3.1227 -0.8904 36 1 6.0053 1.9199 -0.8880 37 1 6.0040 1.9213 0.8920 38 1 8.8462 2.5867 -1.0068 39 1 7.8767 1.9152 0.3211 40 1 10.0633 1.9421 1.2134 41 1 10.4512 3.5097 0.4656 42 1 8.1699 3.4317 2.3978 43 1 9.8182 3.2910 3.0617 44 1 9.7440 7.3891 0.9000 45 1 8.0299 7.8588 1.0031 46 1 8.8984 7.0896 3.5780 47 1 9.5516 8.8807 6.3152 48 1 7.5119 5.9986 -0.5022 49 1 9.1530 5.3100 -0.5238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200049821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:45 Heat of formation + Delta-G solvation = -119.750305 kcal Electronic energy + Delta-G solvation = -26841.312008 eV Core-core repulsion = 22996.920746 eV Total energy + Delta-G solvation = -3844.391262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61320 -38.64696 -38.24536 -35.64947 -35.09485 -34.53089 -32.83491 -30.90240 -30.57252 -28.67730 -27.05273 -26.51696 -25.24180 -23.94904 -22.52267 -21.69455 -21.43179 -20.88344 -18.96360 -17.42638 -17.11134 -16.73806 -16.71204 -16.43887 -16.27665 -15.97742 -15.41945 -15.21652 -14.59670 -14.56887 -14.20803 -13.85104 -13.62587 -13.12940 -13.06592 -12.98126 -12.82846 -12.59500 -12.28940 -12.07669 -11.93444 -11.82054 -11.76048 -11.56476 -11.37811 -11.20591 -10.97129 -10.93586 -10.78033 -10.76219 -10.23196 -10.03133 -9.98507 -9.77273 -9.63214 -9.37032 -8.80514 -8.53547 -6.81178 -5.66679 -2.94597 2.55044 2.84966 3.38518 3.49415 3.54412 3.57110 3.98732 4.31620 4.53423 4.57358 4.60363 4.66563 4.72919 4.88044 4.88901 4.95893 4.98215 4.99331 5.07550 5.23036 5.26245 5.26463 5.34423 5.38281 5.41772 5.43515 5.49259 5.54136 5.59258 5.63752 5.66738 5.86772 5.91731 5.98718 6.02092 6.04918 6.12635 6.37219 6.52493 6.69647 6.78203 6.82081 7.22904 7.77842 8.03931 8.11554 8.51800 9.63280 10.22113 10.58261 11.56374 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.002461 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.784283 B =11376.743488 C =12340.249618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.138 4.138 7 C 0.505 3.495 8 O -0.533 6.533 9 N -0.611 5.611 10 C 0.105 3.895 11 C -0.167 4.167 12 C 0.074 3.926 13 O -0.367 6.367 14 C 0.089 3.911 15 H 0.051 0.949 16 C 0.166 3.834 17 N -0.725 5.725 18 C -0.235 4.235 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.081 3.919 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.026 0.974 45 H 0.034 0.966 46 H 0.387 0.613 47 H 0.253 0.747 48 H 0.093 0.907 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.906 -21.443 -14.095 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.155 4.155 5 C -0.141 4.141 6 C -0.178 4.178 7 C 0.293 3.707 8 O -0.409 6.409 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.206 4.206 12 C -0.003 4.003 13 O -0.285 6.285 14 C 0.029 3.971 15 H 0.068 0.932 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.043 4.043 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.221 0.779 47 H 0.063 0.937 48 H 0.111 0.889 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.952 -20.822 -14.089 27.038 hybrid contribution -0.116 0.714 0.374 0.815 sum -10.068 -20.107 -13.715 26.339 Atomic orbital electron populations 1.22738 0.80984 1.02706 1.00086 1.87853 1.19780 1.28333 1.95473 1.22570 0.94168 0.84454 1.00524 1.21523 0.93100 0.97553 1.03357 1.21258 0.92817 0.95973 1.04082 1.21700 0.96919 0.94920 1.04258 1.20805 0.82077 0.91778 0.76081 1.90730 1.60436 1.40814 1.48900 1.47976 1.05914 1.07021 1.73572 1.22000 0.92981 0.86651 1.00089 1.22516 0.98176 1.02294 0.97584 1.22108 1.00246 0.81688 0.96268 1.86441 1.43416 1.18348 1.80337 1.22255 0.91085 0.92697 0.91042 0.93159 1.20619 0.97941 0.87942 0.89736 1.42222 1.83035 1.10670 1.01034 1.19289 1.37927 0.87490 0.91967 0.91131 1.24743 1.02895 0.97955 0.95621 1.69695 1.56283 1.33876 0.98275 0.86104 0.77735 0.84573 0.77718 1.20580 1.21959 1.21947 1.22402 0.99683 0.82983 0.99234 0.93996 0.94070 0.89662 0.93054 0.93171 0.91076 0.90963 0.90768 0.90917 0.88891 0.88787 0.91490 0.89868 0.89693 0.89940 0.93599 0.89283 0.95609 0.94808 0.77881 0.93694 0.88919 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.40 -3.71 10.70 -35.23 -0.38 -4.08 16 3 C 0.06 0.48 5.94 37.16 0.22 0.70 16 4 C -0.12 -0.89 5.58 -26.73 -0.15 -1.04 16 5 C -0.10 -0.91 4.50 -26.73 -0.12 -1.04 16 6 C -0.14 -1.16 4.04 -27.88 -0.11 -1.27 16 7 C 0.50 6.47 7.63 -10.98 -0.08 6.38 16 8 O -0.53 -9.08 15.41 5.56 0.09 -9.00 16 9 N -0.61 -7.36 2.19 -172.51 -0.38 -7.73 16 10 C 0.11 0.88 6.00 -3.20 -0.02 0.86 16 11 C -0.17 -1.57 5.78 -27.18 -0.16 -1.73 16 12 C 0.07 0.97 6.38 36.42 0.23 1.20 16 13 O -0.37 -6.65 9.18 -26.55 -0.24 -6.89 16 14 C 0.09 1.63 2.73 -25.80 -0.07 1.56 16 15 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 16 C 0.17 3.61 5.95 -4.04 -0.02 3.58 16 17 N -0.73 -19.72 5.49 -59.91 -0.33 -20.05 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 19 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.39 13.06 55.49 0.72 -28.66 16 22 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 C 0.08 1.17 4.86 -3.85 -0.02 1.15 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.09 0.58 8.04 -51.93 -0.42 0.16 16 37 H 0.09 0.66 7.41 -51.93 -0.38 0.27 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.51 5.88 -51.93 -0.31 0.20 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 42 H 0.05 0.60 7.40 -51.93 -0.38 0.22 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.39 11.21 7.53 -40.82 -0.31 10.90 16 47 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 49 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -35.87 390.64 -7.99 -43.86 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.90 Total: 4.48 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.56 Total: 4.02 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.02 Total: -56.45 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.54 Total: -19.97 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.87 -7.99 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200049821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.890 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds