Wall clock time and date at job start Tue Mar 31 2020 10:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00078 * 2 1 4 4 C 1.53003 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46961 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46961 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47005 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99934 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99816 * 180.02562 * 7 6 5 10 10 C 1.47505 * 118.75811 * 359.97438 * 9 7 6 11 11 C 1.53566 * 111.03437 * 221.60598 * 10 9 7 12 12 C 1.51535 * 109.57369 * 39.98650 * 11 10 9 13 13 O 1.42152 * 108.75353 * 268.59688 * 12 11 10 14 14 C 1.38020 * 119.44545 * 87.22711 * 13 12 11 15 15 H 1.09005 * 109.46518 * 56.57628 * 14 13 12 16 16 C 1.52991 * 109.47312 * 176.57247 * 14 13 12 17 17 N 1.46505 * 109.47310 * 300.00183 * 16 14 13 18 18 C 1.36941 * 120.00162 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99505 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00018 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99895 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47426 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47366 * 120.00318 * 22 20 18 25 25 H 1.48507 * 109.47264 * 239.99812 * 22 20 18 26 26 C 1.45116 * 118.75683 * 179.97438 * 9 7 6 27 27 H 1.08996 * 109.46996 * 300.00481 * 1 2 3 28 28 H 1.09003 * 109.46787 * 60.00360 * 1 2 3 29 29 H 1.08992 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47137 * 59.99844 * 3 2 1 31 31 H 1.09003 * 109.47063 * 299.99657 * 3 2 1 32 32 H 1.08991 * 109.46766 * 59.99974 * 4 3 2 33 33 H 1.08996 * 109.46769 * 300.00157 * 4 3 2 34 34 H 1.09005 * 109.46977 * 60.00316 * 5 4 3 35 35 H 1.08997 * 109.47208 * 300.00385 * 5 4 3 36 36 H 1.08999 * 109.46837 * 59.99926 * 6 5 4 37 37 H 1.09003 * 109.47069 * 300.00222 * 6 5 4 38 38 H 1.09004 * 109.16451 * 101.20939 * 10 9 7 39 39 H 1.08995 * 109.16784 * 342.01389 * 10 9 7 40 40 H 1.09005 * 109.45203 * 160.01311 * 11 10 9 41 41 H 1.08996 * 109.45484 * 279.95324 * 11 10 9 42 42 H 1.09003 * 109.59300 * 28.37417 * 12 11 10 43 43 H 1.09002 * 109.59241 * 148.81466 * 12 11 10 44 44 H 1.09009 * 109.47116 * 60.00175 * 16 14 13 45 45 H 1.09002 * 109.47278 * 180.02562 * 16 14 13 46 46 H 0.97000 * 120.00118 * 0.02562 * 17 16 14 47 47 H 0.97003 * 119.99597 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.46225 * 330.71696 * 26 9 7 49 49 H 1.09000 * 109.45344 * 210.74623 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6831 2.4615 0.0013 7 6 6.2960 3.8383 0.0013 8 8 5.5831 4.8194 -0.0001 9 7 7.6364 3.9791 0.0018 10 6 8.4773 2.7673 0.0030 11 6 9.6717 2.9260 0.9551 12 6 9.2246 3.6380 2.2159 13 8 9.4137 5.0362 2.0426 14 6 8.4146 5.7889 1.4593 15 1 7.4899 5.6641 2.0228 16 6 8.8192 7.2643 1.4634 17 7 9.0242 7.7107 2.8437 18 6 9.3945 9.0045 3.0971 19 1 9.5349 9.6959 2.2794 20 6 9.5882 9.4275 4.4048 21 7 9.4165 8.5849 5.4013 22 14 10.0926 11.1925 4.7505 23 1 10.2195 11.9313 3.4685 24 1 9.0626 11.8448 5.5983 25 1 11.3974 11.2048 5.4595 26 6 8.1978 5.3173 0.0012 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8574 0.6436 -0.8891 33 1 3.8567 0.6438 0.8908 34 1 3.8359 3.1238 0.8896 35 1 3.8365 3.1227 -0.8904 36 1 6.0053 1.9199 -0.8880 37 1 6.0040 1.9213 0.8920 38 1 8.8462 2.5867 -1.0068 39 1 7.8767 1.9152 0.3211 40 1 10.0633 1.9421 1.2134 41 1 10.4512 3.5097 0.4656 42 1 8.1699 3.4317 2.3978 43 1 9.8182 3.2910 3.0617 44 1 9.7440 7.3891 0.9000 45 1 8.0299 7.8588 1.0031 46 1 8.8984 7.0896 3.5780 47 1 9.5516 8.8807 6.3152 48 1 7.5119 5.9986 -0.5022 49 1 9.1530 5.3100 -0.5238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200049821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:44 Heat of formation + Delta-G solvation = -144.981333 kcal Electronic energy + Delta-G solvation = -26842.406108 eV Core-core repulsion = 22996.920746 eV Total energy + Delta-G solvation = -3845.485362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66651 -39.79244 -38.92131 -36.91308 -36.24009 -35.78076 -34.30739 -32.66179 -31.42138 -29.98482 -28.04223 -27.28347 -26.61027 -25.17456 -23.99296 -22.78452 -22.30160 -22.08022 -19.89104 -19.27382 -18.35170 -17.76643 -17.56814 -17.39288 -17.19513 -16.91458 -16.51401 -16.30618 -16.02613 -15.50558 -15.36880 -15.16224 -14.83533 -14.71355 -14.48038 -13.95693 -13.69963 -13.65114 -13.47685 -13.23573 -13.09827 -12.80756 -12.69369 -12.60430 -12.44195 -12.36067 -12.24182 -12.09718 -12.00511 -11.87700 -11.79178 -11.60217 -11.45975 -11.00495 -10.82359 -10.63509 -10.54737 -9.63203 -9.02680 -7.95487 -5.25414 1.45620 1.47995 1.57978 1.59004 1.94909 2.55167 2.72442 2.80077 3.37774 3.52437 3.64455 3.86993 3.89514 3.95610 4.01791 4.08027 4.13005 4.27188 4.31094 4.32057 4.36235 4.40556 4.47269 4.51708 4.53182 4.53768 4.65658 4.69926 4.74605 4.77820 4.83205 4.85184 4.87719 4.91177 4.97706 5.08740 5.14091 5.21512 5.27631 5.37524 5.46053 5.54939 6.20531 6.25179 6.31387 6.75726 7.15370 7.31322 8.05528 8.31070 9.28666 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.002461 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.784283 B =11376.743488 C =12340.249618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.055 3.945 4 C -0.108 4.108 5 C -0.099 4.099 6 C -0.129 4.129 7 C 0.496 3.504 8 O -0.587 6.587 9 N -0.611 5.611 10 C 0.100 3.900 11 C -0.157 4.157 12 C 0.063 3.937 13 O -0.398 6.398 14 C 0.106 3.894 15 H 0.018 0.982 16 C 0.162 3.838 17 N -0.740 5.740 18 C -0.247 4.247 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.981 3.019 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.094 3.906 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.077 0.923 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 -23.441 -15.662 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C -0.022 4.022 4 C -0.145 4.145 5 C -0.137 4.137 6 C -0.168 4.168 7 C 0.286 3.714 8 O -0.467 6.467 9 N -0.343 5.343 10 C -0.021 4.021 11 C -0.195 4.195 12 C -0.012 4.012 13 O -0.317 6.317 14 C 0.045 3.955 15 H 0.036 0.964 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.379 4.379 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.809 3.191 23 H -0.188 1.188 24 H -0.219 1.219 25 H -0.217 1.217 26 C -0.031 4.031 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.096 0.904 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.267 -22.862 -15.706 29.244 hybrid contribution -0.345 1.273 0.862 1.576 sum -9.611 -21.589 -14.844 27.907 Atomic orbital electron populations 1.22916 0.79747 1.03832 1.00660 1.87811 1.21279 1.28805 1.95588 1.22634 0.94781 0.84247 1.00520 1.21426 0.92465 0.96494 1.04149 1.21173 0.93598 0.96491 1.02448 1.21759 0.95904 0.92283 1.06868 1.21677 0.82010 0.92986 0.74711 1.90709 1.61689 1.42933 1.51328 1.48113 1.06321 1.07081 1.72799 1.22363 0.92577 0.85655 1.01473 1.22438 0.98324 1.03316 0.95447 1.22419 1.00477 0.79473 0.98881 1.86359 1.43352 1.21089 1.80909 1.21859 0.89392 0.90978 0.93222 0.96411 1.20769 0.97982 0.90710 0.87082 1.42421 1.83060 1.09982 1.02751 1.19733 1.37153 0.88562 0.92431 0.90391 1.25677 1.03560 1.02532 0.95436 1.69867 1.57782 1.36036 0.98486 0.84970 0.76960 0.79263 0.77919 1.18850 1.21940 1.21745 1.22048 1.00274 0.84572 0.96172 0.93636 0.93311 0.88331 0.93480 0.92884 0.89807 0.90478 0.93097 0.92070 0.85433 0.86528 0.88802 0.86688 0.86056 0.90961 0.93844 0.88900 0.94937 0.94920 0.79469 0.93991 0.90419 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.29 10.70 -148.98 -1.59 -8.88 16 3 C 0.05 0.84 5.94 71.98 0.43 1.27 16 4 C -0.11 -1.42 5.58 30.60 0.17 -1.25 16 5 C -0.10 -1.65 4.50 30.60 0.14 -1.52 16 6 C -0.13 -1.81 4.04 29.85 0.12 -1.69 16 7 C 0.50 12.21 7.63 87.66 0.67 12.88 16 8 O -0.59 -20.62 15.41 -3.02 -0.05 -20.67 16 9 N -0.61 -13.64 2.19 -818.08 -1.79 -15.43 16 10 C 0.10 1.26 6.00 86.38 0.52 1.77 16 11 C -0.16 -2.44 5.78 30.30 0.18 -2.26 16 12 C 0.06 1.60 6.38 71.50 0.46 2.06 16 13 O -0.40 -14.59 9.18 -117.93 -1.08 -15.68 16 14 C 0.11 3.98 2.73 31.20 0.09 4.06 16 15 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 16 C 0.16 7.26 5.95 86.38 0.51 7.78 16 17 N -0.74 -41.62 5.49 -343.44 -1.89 -43.51 16 18 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 20 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 21 N -0.97 -62.71 13.06 21.65 0.28 -62.43 16 22 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 23 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 C 0.09 2.71 4.86 87.24 0.42 3.14 16 27 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 35 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.13 0.98 8.04 -2.39 -0.02 0.96 16 37 H 0.12 1.17 7.41 -2.39 -0.02 1.15 16 38 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.12 0.76 5.88 -2.39 -0.01 0.75 16 40 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.07 1.32 8.01 -2.39 -0.02 1.30 16 42 H 0.04 1.10 7.40 -2.39 -0.02 1.09 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.37 22.64 7.53 -92.71 -0.70 21.94 16 47 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.08 2.47 7.27 -2.39 -0.02 2.45 16 49 H 0.10 2.50 8.11 -2.39 -0.02 2.48 16 Total: -1.00 -81.46 390.64 2.37 -79.08 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.21 Total: 27.82 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.25 Total: 9.43 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -3.39 Total: -121.36 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -2.72 Total: -45.22 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -81.46 2.37 -79.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200049821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.897 kcal (2) G-P(sol) polarization free energy of solvation -81.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds