Wall clock time and date at job start Tue Mar 31 2020 11:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46822 * 2 1 4 4 C 1.53001 * 109.46917 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47116 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47115 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47458 * 304.99782 * 7 6 5 9 9 F 1.39901 * 109.47164 * 65.00209 * 7 6 5 10 10 C 1.50703 * 109.47022 * 184.99671 * 7 6 5 11 11 O 1.21279 * 120.00304 * 316.11228 * 10 7 6 12 12 N 1.34780 * 119.99656 * 136.10631 * 10 7 6 13 13 C 1.46927 * 120.63158 * 5.24651 * 12 10 7 14 14 C 1.53633 * 108.53874 * 126.36692 * 13 12 10 15 15 C 1.53037 * 109.23956 * 54.85917 * 14 13 12 16 16 N 1.46500 * 109.45501 * 178.48555 * 15 14 13 17 17 C 1.36937 * 120.00211 * 275.06683 * 16 15 14 18 18 H 1.07995 * 120.00070 * 0.02562 * 17 16 15 19 19 C 1.38821 * 119.99887 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99759 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47280 * 90.00151 * 21 19 17 23 23 H 1.48499 * 109.46980 * 210.00002 * 21 19 17 24 24 H 1.48504 * 109.47471 * 330.00055 * 21 19 17 25 25 C 1.53042 * 109.54033 * 298.50728 * 15 14 13 26 26 C 1.46929 * 120.62898 * 185.52744 * 12 10 7 27 27 H 1.08999 * 109.47369 * 59.99264 * 1 2 3 28 28 H 1.09004 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46945 * 299.99178 * 1 2 3 30 30 H 1.09005 * 109.46682 * 240.00396 * 2 1 3 31 31 H 1.08999 * 109.47369 * 120.00736 * 2 1 3 32 32 H 1.09005 * 109.47169 * 60.00694 * 3 2 1 33 33 H 1.08999 * 109.47749 * 300.00503 * 3 2 1 34 34 H 1.08997 * 109.47511 * 60.00268 * 4 3 2 35 35 H 1.09006 * 109.47365 * 300.00005 * 4 3 2 36 36 H 1.08997 * 109.46837 * 300.00019 * 5 4 3 37 37 H 1.09001 * 109.46894 * 60.00082 * 5 4 3 38 38 H 1.09009 * 109.47130 * 300.00111 * 6 5 4 39 39 H 1.09001 * 109.47248 * 59.99468 * 6 5 4 40 40 H 1.08992 * 109.58828 * 246.20041 * 13 12 10 41 41 H 1.09002 * 109.58278 * 6.63241 * 13 12 10 42 42 H 1.08997 * 109.63320 * 294.86722 * 14 13 12 43 43 H 1.09003 * 109.42459 * 174.72748 * 14 13 12 44 44 H 1.09000 * 109.45891 * 58.53337 * 15 14 13 45 45 H 0.97003 * 119.99629 * 95.07109 * 16 15 14 46 46 H 0.97003 * 119.99525 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.49275 * 301.41946 * 25 15 14 48 48 H 1.08999 * 109.52325 * 181.33388 * 25 15 14 49 49 H 1.08998 * 109.58675 * 353.37821 * 26 12 10 50 50 H 1.09003 * 109.58525 * 113.65829 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 6 6.1199 4.3276 0.0000 8 1 5.6854 4.8666 -0.8418 9 9 5.7499 4.9530 1.1954 10 6 7.6219 4.3294 -0.1238 11 8 8.2852 3.5523 0.5298 12 7 8.2280 5.1945 -0.9609 13 6 7.4496 6.2174 -1.6726 14 6 8.0789 7.5912 -1.3946 15 6 9.5610 7.5529 -1.7737 16 7 10.1575 8.8713 -1.5444 17 6 10.0694 9.8397 -2.5086 18 1 9.5598 9.6318 -3.4378 19 6 10.6350 11.0887 -2.2915 20 7 11.2564 11.3419 -1.1592 21 14 10.5142 12.4099 -3.6064 22 1 9.2795 13.2075 -3.3948 23 1 11.6993 13.3009 -3.5231 24 1 10.4677 11.7719 -4.9466 25 6 10.2821 6.5108 -0.9157 26 6 9.6788 5.1286 -1.1838 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8908 35 1 3.9338 0.9285 0.8891 36 1 3.7162 3.3994 -0.8895 37 1 3.7170 3.3983 0.8905 38 1 5.9734 2.3708 0.8898 39 1 5.9734 2.3716 -0.8902 40 1 7.4699 6.0130 -2.7430 41 1 6.4197 6.2068 -1.3157 42 1 7.9801 7.8318 -0.3361 43 1 7.5705 8.3498 -1.9897 44 1 9.6599 7.2880 -2.8264 45 1 10.6149 9.0581 -0.7097 46 1 11.6513 12.2148 -1.0074 47 1 10.1626 6.7617 0.1383 48 1 11.3422 6.5005 -1.1693 49 1 10.1201 4.3992 -0.5046 50 1 9.8771 4.8347 -2.2146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203344270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:08 Heat of formation + Delta-G solvation = -124.580986 kcal Electronic energy + Delta-G solvation = -26363.853033 eV Core-core repulsion = 22531.625086 eV Total energy + Delta-G solvation = -3832.227947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.96483 -41.21649 -38.83778 -37.50300 -36.21460 -34.93738 -33.89692 -32.41483 -31.34104 -30.86636 -27.94494 -26.46587 -24.73915 -24.48793 -23.48652 -22.00356 -21.89991 -21.52422 -20.21818 -19.11472 -18.85405 -17.74803 -17.16858 -16.78170 -16.71772 -16.37722 -15.74857 -15.58083 -15.46454 -15.32132 -15.17632 -14.84080 -14.70922 -14.46738 -14.16116 -13.86547 -13.79135 -13.40377 -13.35772 -13.19003 -13.11557 -12.83941 -12.68337 -12.56821 -12.28287 -12.25335 -12.15510 -12.06610 -11.95055 -11.77647 -11.71326 -11.56710 -11.35700 -11.32863 -11.31053 -10.94452 -10.70006 -9.79896 -9.01135 -7.92809 -5.21881 1.24937 1.49005 1.50264 1.58575 1.77176 2.57322 3.09938 3.40233 3.41639 3.54459 3.76577 3.79875 3.88419 3.99447 4.05243 4.09881 4.14237 4.19714 4.30373 4.36559 4.38255 4.44696 4.58460 4.61386 4.65166 4.74054 4.79474 4.81510 4.83444 4.91882 4.95881 4.97485 4.99011 5.04325 5.11364 5.17458 5.25237 5.27191 5.29085 5.41553 5.45848 5.51348 5.53365 5.56061 5.58065 6.20833 6.28599 6.87497 7.34423 8.10160 8.32846 9.30944 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.002135 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.981921 B =13113.138244 C =13769.718557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.077 3.923 8 H 0.138 0.862 9 F -0.205 7.205 10 C 0.488 3.512 11 O -0.568 6.568 12 N -0.598 5.598 13 C 0.107 3.893 14 C -0.143 4.143 15 C 0.173 3.827 16 N -0.739 5.739 17 C -0.235 4.235 18 H 0.083 0.917 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.972 3.028 22 H -0.289 1.289 23 H -0.301 1.301 24 H -0.266 1.266 25 C -0.129 4.129 26 C 0.120 3.880 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.369 0.631 46 H 0.249 0.751 47 H 0.043 0.957 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.200 -22.176 -2.159 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.168 4.168 7 C 0.039 3.961 8 H 0.155 0.845 9 F -0.185 7.185 10 C 0.275 3.725 11 O -0.447 6.447 12 N -0.330 5.330 13 C -0.015 4.015 14 C -0.184 4.184 15 C 0.064 3.936 16 N -0.378 5.378 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.802 3.198 22 H -0.216 1.216 23 H -0.228 1.228 24 H -0.190 1.190 25 C -0.168 4.168 26 C -0.002 4.002 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.200 0.800 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.881 -22.481 -1.980 29.425 hybrid contribution 0.675 1.419 0.344 1.609 sum -18.207 -21.062 -1.637 27.889 Atomic orbital electron populations 1.21790 0.95675 1.01803 1.01875 1.21550 0.96087 0.96830 1.01977 1.21608 0.94890 0.96922 1.02227 1.21560 0.95719 0.95863 1.02297 1.21583 0.92378 0.98131 1.03231 1.22040 0.97762 0.92280 1.04682 1.22007 0.90297 0.97688 0.86154 0.84467 1.92861 1.91954 1.84302 1.49432 1.21494 0.91554 0.80435 0.79042 1.90680 1.67249 1.41707 1.45041 1.48359 1.09022 1.31979 1.43671 1.22204 0.95418 0.85493 0.98357 1.22553 0.98414 0.96597 1.00816 1.20442 0.91263 0.84386 0.97483 1.42687 1.66332 1.10029 1.18777 1.19669 1.27955 0.92055 0.96988 0.89930 1.25580 1.01717 1.00376 0.99490 1.69837 1.43568 1.22606 1.26404 0.85152 0.76386 0.79129 0.79172 1.21595 1.22765 1.19025 1.22067 1.00447 0.94751 0.99575 1.21612 0.79090 0.96598 1.02932 0.92537 0.92526 0.92890 0.91835 0.92382 0.92338 0.91452 0.91224 0.92531 0.89869 0.92040 0.91461 0.88572 0.87868 0.87621 0.94219 0.90998 0.92496 0.80013 0.94255 0.93796 0.90700 0.89906 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.28 5.93 30.59 0.18 -1.10 16 3 C -0.12 -1.25 5.21 30.59 0.16 -1.09 16 4 C -0.12 -1.34 5.21 30.60 0.16 -1.18 16 5 C -0.12 -1.47 5.13 30.60 0.16 -1.31 16 6 C -0.13 -2.14 4.68 30.59 0.14 -2.00 16 7 C 0.08 1.54 3.19 29.85 0.10 1.64 16 8 H 0.14 1.78 5.70 -2.39 -0.01 1.77 16 9 F -0.20 -5.26 16.75 44.97 0.75 -4.50 16 10 C 0.49 13.07 7.04 87.66 0.62 13.69 16 11 O -0.57 -19.42 16.00 -3.03 -0.05 -19.47 16 12 N -0.60 -14.90 2.97 -818.04 -2.43 -17.33 16 13 C 0.11 2.25 6.22 86.51 0.54 2.79 16 14 C -0.14 -4.45 5.67 30.82 0.17 -4.27 16 15 C 0.17 6.26 2.73 45.02 0.12 6.38 16 16 N -0.74 -36.11 5.12 -322.81 -1.65 -37.76 16 17 C -0.23 -12.51 9.93 84.04 0.83 -11.68 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 21 Si 0.97 45.17 29.55 68.60 2.03 47.19 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 C -0.13 -4.18 5.55 30.67 0.17 -4.01 16 26 C 0.12 3.15 6.44 86.36 0.56 3.70 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.91 7.94 -2.39 -0.02 0.89 16 38 H 0.07 1.39 8.04 -2.38 -0.02 1.37 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.11 1.68 5.43 -2.39 -0.01 1.67 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 45 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 46 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 49 H 0.08 2.33 7.00 -2.39 -0.02 2.31 16 50 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -69.20 397.65 4.20 -65.00 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.17 Total: 29.28 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.09 Total: -3.20 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -3.80 Total: -114.30 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.75 Total: -4.50 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.20 4.20 -65.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203344270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.580 kcal (2) G-P(sol) polarization free energy of solvation -69.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds