Wall clock time and date at job start Tue Mar 31 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.53005 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47369 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47088 * 60.00043 * 5 4 3 7 7 F 1.39903 * 109.47347 * 300.00377 * 5 4 3 8 8 C 1.50696 * 109.47236 * 180.02562 * 5 4 3 9 9 O 1.21283 * 120.00045 * 245.47201 * 8 5 4 10 10 N 1.34776 * 120.00118 * 65.47586 * 8 5 4 11 11 C 1.46923 * 120.63134 * 5.04466 * 10 8 5 12 12 C 1.53628 * 108.54278 * 126.37161 * 11 10 8 13 13 C 1.53044 * 109.24009 * 54.85841 * 12 11 10 14 14 C 1.53001 * 109.44810 * 178.49813 * 13 12 11 15 15 N 1.46495 * 109.47064 * 295.05988 * 14 13 12 16 16 C 1.36939 * 119.99868 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99962 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99988 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47361 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47092 * 120.00173 * 20 18 16 23 23 H 1.48508 * 109.47038 * 239.99714 * 20 18 16 24 24 C 1.53048 * 109.53745 * 298.51361 * 13 12 11 25 25 C 1.46930 * 120.62993 * 185.33727 * 10 8 5 26 26 H 1.08995 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47620 * 300.00598 * 1 2 3 28 28 H 1.09003 * 109.46532 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.47620 * 239.99402 * 2 1 3 30 30 H 1.09002 * 109.46640 * 119.99164 * 2 1 3 31 31 H 1.08998 * 109.46925 * 299.99597 * 3 2 1 32 32 H 1.09000 * 109.47349 * 59.99799 * 3 2 1 33 33 H 1.09003 * 109.46929 * 300.00223 * 4 3 2 34 34 H 1.09000 * 109.46709 * 59.99931 * 4 3 2 35 35 H 1.09002 * 109.46815 * 53.93196 * 6 5 4 36 36 H 1.08993 * 109.47152 * 173.93157 * 6 5 4 37 37 H 1.08997 * 109.46984 * 293.93414 * 6 5 4 38 38 H 1.08998 * 109.59230 * 246.20306 * 11 10 8 39 39 H 1.08998 * 109.58638 * 6.63746 * 11 10 8 40 40 H 1.08994 * 109.63370 * 294.87220 * 12 11 10 41 41 H 1.08998 * 109.43238 * 174.72914 * 12 11 10 42 42 H 1.09001 * 109.45652 * 58.53352 * 13 12 11 43 43 H 1.09002 * 109.47199 * 55.06372 * 14 13 12 44 44 H 1.09007 * 109.46704 * 175.06147 * 14 13 12 45 45 H 0.96994 * 120.00089 * 0.02562 * 15 14 13 46 46 H 0.96998 * 119.99916 * 179.97438 * 19 18 16 47 47 H 1.08995 * 109.49380 * 301.41306 * 24 13 12 48 48 H 1.09000 * 109.52013 * 181.33222 * 24 13 12 49 49 H 1.08997 * 109.58450 * 353.36426 * 25 10 8 50 50 H 1.08995 * 109.59083 * 113.65577 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 3.5696 3.6069 1.2486 7 9 3.6142 3.5439 -1.1428 8 6 5.5870 2.8849 0.0000 9 8 6.1935 3.3214 0.9554 10 7 6.2609 2.4000 -1.0617 11 6 5.5446 1.9701 -2.2703 12 6 6.1471 2.6997 -3.4807 13 6 7.6560 2.4476 -3.5217 14 6 8.2553 3.1413 -4.7467 15 7 7.7246 2.5250 -5.9652 16 6 8.1215 2.9834 -7.1930 17 1 8.8255 3.7995 -7.2630 18 6 7.6183 2.3998 -8.3476 19 7 6.7600 1.4056 -8.2622 20 14 8.1603 3.0246 -10.0225 21 1 9.1241 4.1405 -9.8464 22 1 8.8109 1.9222 -10.7753 23 1 6.9763 3.5081 -10.7774 24 6 8.3030 3.0060 -2.2521 25 6 7.7254 2.2851 -1.0300 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.9330 0.9288 0.8909 34 1 3.9337 0.9285 -0.8891 35 1 3.8411 3.0347 2.1357 36 1 4.0189 4.5984 1.3042 37 1 2.4851 3.7019 1.1954 38 1 5.6553 0.8932 -2.3972 39 1 4.4883 2.2228 -2.1783 40 1 5.9593 3.7698 -3.3939 41 1 5.6902 2.3226 -4.3956 42 1 7.8435 1.3756 -3.5835 43 1 7.9923 4.1990 -4.7302 44 1 9.3401 3.0363 -4.7292 45 1 7.0921 1.7924 -5.9022 46 1 6.4081 0.9981 -9.0690 47 1 8.0948 4.0733 -2.1770 48 1 9.3806 2.8475 -2.2924 49 1 8.1084 2.7457 -0.1193 50 1 8.0101 1.2333 -1.0552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205556578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:14 Heat of formation + Delta-G solvation = -97.870313 kcal Electronic energy + Delta-G solvation = -27680.033708 eV Core-core repulsion = 23848.964023 eV Total energy + Delta-G solvation = -3831.069685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.25404 -40.23993 -37.89937 -36.47125 -34.98335 -33.27926 -32.75959 -31.07089 -30.30666 -29.01635 -27.05486 -25.57815 -23.95761 -23.22059 -22.75299 -21.54641 -20.93168 -20.16165 -19.14743 -17.73065 -17.02215 -16.50505 -16.30217 -15.88766 -15.26944 -14.94043 -14.64220 -14.56787 -14.19050 -13.96306 -13.77865 -13.75015 -13.50308 -13.14761 -13.13223 -12.82927 -12.67069 -12.49731 -12.47269 -12.22265 -12.18284 -11.77273 -11.69389 -11.48762 -11.43777 -11.12829 -11.02846 -10.91980 -10.84784 -10.79288 -10.39961 -10.30381 -10.22612 -9.96363 -9.67681 -9.64665 -8.86979 -8.69296 -6.90603 -5.76504 -3.04357 2.27757 2.76597 3.43496 3.49451 3.51453 3.89603 4.09324 4.32633 4.38290 4.59358 4.67990 4.71321 4.86381 4.90144 5.00865 5.05646 5.07682 5.18151 5.28206 5.30670 5.35463 5.43327 5.47127 5.50379 5.54800 5.55527 5.62801 5.68335 5.68633 5.77767 5.79680 5.87155 5.94874 5.95380 5.97807 6.03747 6.10790 6.19855 6.28930 6.39997 6.49644 6.63924 6.81098 6.93209 7.23649 7.71466 7.88537 8.42951 9.54201 10.12341 10.47185 11.46599 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.003098 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.356244 B = 9036.611467 C =10355.747942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.145 4.145 5 C 0.107 3.893 6 C -0.157 4.157 7 F -0.187 7.187 8 C 0.501 3.499 9 O -0.533 6.533 10 N -0.595 5.595 11 C 0.086 3.914 12 C -0.122 4.122 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.125 4.125 25 C 0.110 3.890 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.272 -1.733 21.098 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.182 4.182 5 C 0.086 3.914 6 C -0.215 4.215 7 F -0.167 7.167 8 C 0.286 3.714 9 O -0.410 6.410 10 N -0.327 5.327 11 C -0.036 4.036 12 C -0.160 4.160 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.164 4.164 25 C -0.012 4.012 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.857 -1.383 21.437 23.235 hybrid contribution 0.117 0.074 -1.249 1.256 sum -8.739 -1.309 20.188 22.037 Atomic orbital electron populations 1.21768 0.95689 1.01676 1.01907 1.21515 0.96062 0.96357 1.02257 1.21657 0.93383 0.97652 1.03162 1.22348 0.97763 0.93280 1.04859 1.21186 0.90809 0.94488 0.84926 1.22184 1.01885 1.01896 0.95494 1.92853 1.89655 1.82475 1.51764 1.20786 0.89631 0.77961 0.82979 1.90692 1.69445 1.46041 1.34863 1.48169 1.07740 1.61832 1.14968 1.22435 0.97862 0.99219 0.84073 1.21960 0.95835 1.00866 0.97312 1.21323 0.94768 1.00662 0.94584 1.20665 0.95593 0.95108 0.85572 1.42378 1.53623 1.41307 1.00311 1.19283 1.20582 1.13163 0.83776 0.91226 1.24725 0.99864 0.98739 0.97747 1.69661 1.34624 1.26588 1.27435 0.86126 0.77702 0.77852 0.84587 1.20605 1.21902 1.21882 1.21903 1.00239 1.00434 0.93827 1.21696 0.78714 1.00810 0.99944 0.92731 0.92820 0.92533 0.91667 0.92028 0.90894 0.91279 0.89631 0.89555 0.90066 0.90725 0.90470 0.91162 0.88129 0.91634 0.89291 0.90997 0.96411 0.96375 0.78280 0.93614 0.91536 0.90563 0.89218 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.89 4.74 -26.73 -0.13 -1.02 16 4 C -0.14 -1.23 4.21 -26.73 -0.11 -1.34 16 5 C 0.11 1.15 0.85 -91.78 -0.08 1.07 16 6 C -0.16 -1.45 7.72 37.16 0.29 -1.17 16 7 F -0.19 -2.29 13.89 2.25 0.03 -2.26 16 8 C 0.50 6.67 6.78 -10.99 -0.07 6.59 16 9 O -0.53 -8.41 15.38 5.56 0.09 -8.33 16 10 N -0.59 -7.62 2.97 -172.51 -0.51 -8.13 16 11 C 0.09 1.07 4.77 -3.49 -0.02 1.05 16 12 C -0.12 -1.86 5.26 -26.38 -0.14 -2.00 16 13 C -0.09 -1.49 2.19 -90.57 -0.20 -1.68 16 14 C 0.16 3.17 5.65 -4.04 -0.02 3.15 16 15 N -0.73 -18.33 5.32 -59.91 -0.32 -18.65 16 16 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C -0.13 -1.66 5.36 -26.61 -0.14 -1.81 16 25 C 0.11 1.36 6.44 -3.71 -0.02 1.34 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 32 H 0.07 0.46 6.57 -51.93 -0.34 0.11 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.75 5.84 -51.93 -0.30 0.45 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 37 H 0.08 0.57 6.77 -51.93 -0.35 0.22 16 38 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.10 1.19 3.97 -51.93 -0.21 0.98 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.54 7.15 -51.93 -0.37 1.17 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 9.94 6.84 -40.82 -0.28 9.66 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -31.69 385.01 -8.82 -40.51 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.92 Total: 5.63 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.68 Total: -4.74 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.11 Total: -54.06 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.03 Total: -2.26 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.69 -8.82 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205556578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.358 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds