Wall clock time and date at job start Tue Mar 31 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.53005 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47369 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47088 * 60.00043 * 5 4 3 7 7 F 1.39903 * 109.47347 * 300.00377 * 5 4 3 8 8 C 1.50696 * 109.47236 * 180.02562 * 5 4 3 9 9 O 1.21283 * 120.00045 * 245.47201 * 8 5 4 10 10 N 1.34776 * 120.00118 * 65.47586 * 8 5 4 11 11 C 1.46923 * 120.63134 * 5.04466 * 10 8 5 12 12 C 1.53628 * 108.54278 * 126.37161 * 11 10 8 13 13 C 1.53044 * 109.24009 * 54.85841 * 12 11 10 14 14 C 1.53001 * 109.44810 * 178.49813 * 13 12 11 15 15 N 1.46495 * 109.47064 * 295.05988 * 14 13 12 16 16 C 1.36939 * 119.99868 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99962 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99988 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47361 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47092 * 120.00173 * 20 18 16 23 23 H 1.48508 * 109.47038 * 239.99714 * 20 18 16 24 24 C 1.53048 * 109.53745 * 298.51361 * 13 12 11 25 25 C 1.46930 * 120.62993 * 185.33727 * 10 8 5 26 26 H 1.08995 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47620 * 300.00598 * 1 2 3 28 28 H 1.09003 * 109.46532 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.47620 * 239.99402 * 2 1 3 30 30 H 1.09002 * 109.46640 * 119.99164 * 2 1 3 31 31 H 1.08998 * 109.46925 * 299.99597 * 3 2 1 32 32 H 1.09000 * 109.47349 * 59.99799 * 3 2 1 33 33 H 1.09003 * 109.46929 * 300.00223 * 4 3 2 34 34 H 1.09000 * 109.46709 * 59.99931 * 4 3 2 35 35 H 1.09002 * 109.46815 * 53.93196 * 6 5 4 36 36 H 1.08993 * 109.47152 * 173.93157 * 6 5 4 37 37 H 1.08997 * 109.46984 * 293.93414 * 6 5 4 38 38 H 1.08998 * 109.59230 * 246.20306 * 11 10 8 39 39 H 1.08998 * 109.58638 * 6.63746 * 11 10 8 40 40 H 1.08994 * 109.63370 * 294.87220 * 12 11 10 41 41 H 1.08998 * 109.43238 * 174.72914 * 12 11 10 42 42 H 1.09001 * 109.45652 * 58.53352 * 13 12 11 43 43 H 1.09002 * 109.47199 * 55.06372 * 14 13 12 44 44 H 1.09007 * 109.46704 * 175.06147 * 14 13 12 45 45 H 0.96994 * 120.00089 * 0.02562 * 15 14 13 46 46 H 0.96998 * 119.99916 * 179.97438 * 19 18 16 47 47 H 1.08995 * 109.49380 * 301.41306 * 24 13 12 48 48 H 1.09000 * 109.52013 * 181.33222 * 24 13 12 49 49 H 1.08997 * 109.58450 * 353.36426 * 25 10 8 50 50 H 1.08995 * 109.59083 * 113.65577 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 3.5696 3.6069 1.2486 7 9 3.6142 3.5439 -1.1428 8 6 5.5870 2.8849 0.0000 9 8 6.1935 3.3214 0.9554 10 7 6.2609 2.4000 -1.0617 11 6 5.5446 1.9701 -2.2703 12 6 6.1471 2.6997 -3.4807 13 6 7.6560 2.4476 -3.5217 14 6 8.2553 3.1413 -4.7467 15 7 7.7246 2.5250 -5.9652 16 6 8.1215 2.9834 -7.1930 17 1 8.8255 3.7995 -7.2630 18 6 7.6183 2.3998 -8.3476 19 7 6.7600 1.4056 -8.2622 20 14 8.1603 3.0246 -10.0225 21 1 9.1241 4.1405 -9.8464 22 1 8.8109 1.9222 -10.7753 23 1 6.9763 3.5081 -10.7774 24 6 8.3030 3.0060 -2.2521 25 6 7.7254 2.2851 -1.0300 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.9330 0.9288 0.8909 34 1 3.9337 0.9285 -0.8891 35 1 3.8411 3.0347 2.1357 36 1 4.0189 4.5984 1.3042 37 1 2.4851 3.7019 1.1954 38 1 5.6553 0.8932 -2.3972 39 1 4.4883 2.2228 -2.1783 40 1 5.9593 3.7698 -3.3939 41 1 5.6902 2.3226 -4.3956 42 1 7.8435 1.3756 -3.5835 43 1 7.9923 4.1990 -4.7302 44 1 9.3401 3.0363 -4.7292 45 1 7.0921 1.7924 -5.9022 46 1 6.4081 0.9981 -9.0690 47 1 8.0948 4.0733 -2.1770 48 1 9.3806 2.8475 -2.2924 49 1 8.1084 2.7457 -0.1193 50 1 8.0101 1.2333 -1.0552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205556578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:13 Heat of formation + Delta-G solvation = -115.302065 kcal Electronic energy + Delta-G solvation = -27680.789606 eV Core-core repulsion = 23848.964023 eV Total energy + Delta-G solvation = -3831.825582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.17015 -41.30512 -39.11250 -37.13627 -36.62124 -34.55939 -33.84607 -32.39138 -31.92478 -29.66235 -28.47057 -26.61689 -25.42118 -24.38943 -23.92704 -22.65546 -21.75259 -21.27975 -20.22972 -19.20408 -18.58120 -17.51590 -17.16128 -16.75033 -16.58938 -16.16180 -15.86191 -15.58942 -15.49922 -15.38889 -15.28683 -14.55577 -14.53020 -14.26036 -14.11580 -13.99483 -13.79954 -13.57002 -13.43125 -13.19389 -13.11163 -13.00568 -12.90560 -12.77251 -12.33580 -12.28054 -12.15521 -12.07775 -12.01028 -11.97279 -11.73338 -11.69675 -11.43307 -11.35998 -11.26383 -10.93889 -10.68767 -9.77732 -8.98457 -7.95154 -5.23085 1.24803 1.47385 1.47706 1.57778 1.78235 2.55891 2.98495 3.32860 3.38324 3.53324 3.62471 3.73662 3.77644 3.86761 4.04399 4.09126 4.12476 4.26730 4.31244 4.32277 4.38984 4.48605 4.54588 4.63043 4.67264 4.72170 4.77010 4.80235 4.81226 4.86033 4.93045 4.94502 4.99594 5.04881 5.05301 5.11310 5.14341 5.15910 5.23965 5.32954 5.42031 5.45476 5.49973 5.51414 5.52281 6.19523 6.27925 6.85139 7.34591 8.10200 8.34926 9.28355 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.003098 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.356244 B = 9036.611467 C =10355.747942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.139 4.139 5 C 0.105 3.895 6 C -0.155 4.155 7 F -0.197 7.197 8 C 0.496 3.504 9 O -0.561 6.561 10 N -0.596 5.596 11 C 0.096 3.904 12 C -0.116 4.116 13 C -0.083 4.083 14 C 0.157 3.843 15 N -0.742 5.742 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.966 5.966 20 Si 0.971 3.029 21 H -0.269 1.269 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.116 4.116 25 C 0.111 3.889 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.011 0.989 44 H 0.021 0.979 45 H 0.376 0.624 46 H 0.252 0.748 47 H 0.056 0.944 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 -2.120 22.121 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.177 4.177 5 C 0.084 3.916 6 C -0.212 4.212 7 F -0.178 7.178 8 C 0.283 3.717 9 O -0.440 6.440 10 N -0.327 5.327 11 C -0.026 4.026 12 C -0.155 4.155 13 C -0.102 4.102 14 C 0.031 3.969 15 N -0.385 5.385 16 C -0.378 4.378 17 H 0.089 0.911 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.194 1.194 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.155 4.155 25 C -0.010 4.010 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.029 0.971 44 H 0.038 0.962 45 H 0.209 0.791 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.964 -1.752 22.478 24.263 hybrid contribution 0.189 0.241 -1.535 1.566 sum -8.775 -1.512 20.943 22.757 Atomic orbital electron populations 1.21776 0.95429 1.01952 1.01969 1.21506 0.96287 0.95894 1.02410 1.21633 0.92460 0.98121 1.03243 1.22343 0.98481 0.91562 1.05306 1.21344 0.89123 0.96053 0.85051 1.22203 1.03000 1.00963 0.95059 1.92833 1.89590 1.82865 1.52524 1.21268 0.90759 0.77162 0.82540 1.90676 1.70290 1.47147 1.35845 1.48246 1.08052 1.61547 1.14891 1.22362 0.97939 0.99694 0.82601 1.21841 0.95648 1.00247 0.97746 1.21203 0.94921 1.00319 0.93790 1.20808 0.95687 0.94804 0.85646 1.42548 1.53582 1.41265 1.01099 1.19638 1.20095 1.12862 0.85162 0.91110 1.25514 1.00444 0.99347 1.01229 1.69800 1.35930 1.27872 1.28064 0.85112 0.77273 0.77465 0.80138 1.19388 1.21874 1.21977 1.21819 1.01050 0.99769 0.92841 1.21732 0.78444 1.01785 0.99071 0.92385 0.92191 0.93062 0.92184 0.91223 0.91856 0.90177 0.88511 0.89771 0.89202 0.92254 0.88473 0.89448 0.87392 0.93001 0.91614 0.90757 0.97142 0.96156 0.79088 0.93954 0.92514 0.89018 0.89359 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.12 -1.50 4.74 30.60 0.15 -1.36 16 4 C -0.14 -2.09 4.21 30.59 0.13 -1.96 16 5 C 0.11 2.12 0.85 -11.54 -0.01 2.11 16 6 C -0.15 -2.64 7.72 71.98 0.56 -2.08 16 7 F -0.20 -4.68 13.89 44.97 0.62 -4.06 16 8 C 0.50 12.64 6.78 87.66 0.59 13.23 16 9 O -0.56 -17.20 15.38 -3.04 -0.05 -17.24 16 10 N -0.60 -14.44 2.97 -818.07 -2.43 -16.87 16 11 C 0.10 2.28 4.77 86.51 0.41 2.69 16 12 C -0.12 -3.55 5.26 30.82 0.16 -3.39 16 13 C -0.08 -2.57 2.19 -10.76 -0.02 -2.59 16 14 C 0.16 6.29 5.65 86.38 0.49 6.78 16 15 N -0.74 -37.51 5.32 -343.44 -1.83 -39.34 16 16 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 17 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 20 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C -0.12 -2.93 5.36 30.68 0.16 -2.76 16 25 C 0.11 2.55 6.44 86.36 0.56 3.10 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.95 7.80 -2.39 -0.02 0.93 16 32 H 0.08 0.85 6.57 -2.39 -0.02 0.84 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.30 5.84 -2.39 -0.01 1.29 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.19 8.00 -2.39 -0.02 1.18 16 37 H 0.10 1.24 6.77 -2.39 -0.02 1.22 16 38 H 0.09 1.82 8.13 -2.39 -0.02 1.80 16 39 H 0.11 2.45 3.97 -2.39 -0.01 2.44 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 2.32 7.15 -2.39 -0.02 2.31 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.38 19.85 6.84 -92.71 -0.63 19.22 16 46 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.09 2.11 7.00 -2.39 -0.02 2.09 16 50 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.34 385.01 4.29 -63.05 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.27 Total: 29.58 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.38 Total: -5.21 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -3.97 Total: -114.40 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.05 Total: -17.24 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.62 Total: -4.06 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -67.34 4.29 -63.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205556578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.248 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds