Wall clock time and date at job start Tue Mar 31 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47494 * 2 1 4 4 C 1.53001 * 109.47365 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46997 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47127 * 304.99683 * 5 4 3 7 7 F 1.39897 * 109.47129 * 65.00058 * 5 4 3 8 8 C 1.50699 * 109.46866 * 184.99891 * 5 4 3 9 9 O 1.21287 * 120.00334 * 9.99703 * 8 5 4 10 10 N 1.34774 * 120.00055 * 190.00142 * 8 5 4 11 11 C 1.46927 * 120.63144 * 359.71782 * 10 8 5 12 12 C 1.53616 * 108.54256 * 126.37056 * 11 10 8 13 13 C 1.53040 * 109.24469 * 54.85859 * 12 11 10 14 14 C 1.53005 * 109.46170 * 178.48875 * 13 12 11 15 15 N 1.46495 * 109.47029 * 295.07003 * 14 13 12 16 16 C 1.36937 * 120.00014 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00199 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00293 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99700 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46969 * 60.00692 * 20 18 16 22 22 H 1.48507 * 109.46750 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47153 * 300.00083 * 20 18 16 24 24 C 1.53033 * 109.53759 * 298.51155 * 13 12 11 25 25 C 1.46929 * 120.63211 * 180.02562 * 10 8 5 26 26 H 1.09006 * 109.47320 * 300.00202 * 1 2 3 27 27 H 1.08998 * 109.47044 * 59.99798 * 1 2 3 28 28 H 1.09002 * 109.47735 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47320 * 239.99798 * 2 1 3 30 30 H 1.09007 * 109.46934 * 119.99943 * 2 1 3 31 31 H 1.09000 * 109.47097 * 60.00057 * 3 2 1 32 32 H 1.08998 * 109.47140 * 300.00143 * 3 2 1 33 33 H 1.09000 * 109.46998 * 59.99958 * 4 3 2 34 34 H 1.09007 * 109.46967 * 299.99884 * 4 3 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 37 37 H 1.09004 * 109.47261 * 300.00303 * 6 5 4 38 38 H 1.08996 * 109.58474 * 246.20624 * 11 10 8 39 39 H 1.09003 * 109.58206 * 6.62743 * 11 10 8 40 40 H 1.08997 * 109.63629 * 294.86245 * 12 11 10 41 41 H 1.09004 * 109.45867 * 174.74289 * 12 11 10 42 42 H 1.09001 * 109.44838 * 58.52487 * 13 12 11 43 43 H 1.08998 * 109.46843 * 55.06487 * 14 13 12 44 44 H 1.08997 * 109.47054 * 175.06653 * 14 13 12 45 45 H 0.97010 * 120.00306 * 359.97438 * 15 14 13 46 46 H 0.97004 * 120.00079 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.49844 * 301.41402 * 24 13 12 48 48 H 1.08998 * 109.52420 * 181.33431 * 24 13 12 49 49 H 1.09005 * 109.58595 * 353.36970 * 25 10 8 50 50 H 1.09000 * 109.58794 * 113.65009 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.4695 3.6423 -1.1809 7 9 3.7104 3.5097 1.1959 8 6 5.5819 2.8868 -0.1244 9 8 6.1699 1.8590 -0.3868 10 7 6.2716 4.0305 0.0559 11 6 5.5730 5.2847 0.3682 12 6 6.1877 5.8820 1.6430 13 6 7.6982 6.0355 1.4506 14 6 8.3104 6.6651 2.7035 15 7 7.7982 8.0280 2.8653 16 6 8.2091 8.7927 3.9243 17 1 8.9104 8.3909 4.6406 18 6 7.7242 10.0843 4.0773 19 7 6.8691 10.5739 3.2047 20 14 8.2842 11.1271 5.5225 21 1 9.7578 11.3016 5.4653 22 1 7.6250 12.4564 5.4585 23 1 7.9144 10.4524 6.7925 24 6 8.3261 4.6605 1.2121 25 6 7.7360 4.0482 -0.0627 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9287 -0.8909 34 1 3.9337 0.9284 0.8892 35 1 3.8332 4.6698 -1.1807 36 1 2.3833 3.6409 -1.0909 37 1 3.7575 3.1554 -2.1128 38 1 5.6901 5.9841 -0.4596 39 1 4.5144 5.0824 0.5314 40 1 5.9939 5.2208 2.4876 41 1 5.7445 6.8588 1.8367 42 1 7.8911 6.6769 0.5906 43 1 8.0426 6.0703 3.5768 44 1 9.3953 6.6941 2.6025 45 1 7.1685 8.3891 2.2217 46 1 6.5299 11.4764 3.3117 47 1 8.1122 4.0106 2.0607 48 1 9.4049 4.7673 1.0986 49 1 8.1052 3.0298 -0.1839 50 1 8.0255 4.6469 -0.9263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205556579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:16 Heat of formation + Delta-G solvation = -96.944415 kcal Electronic energy + Delta-G solvation = -27468.504145 eV Core-core repulsion = 23637.474610 eV Total energy + Delta-G solvation = -3831.029535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.24522 -40.22478 -37.95494 -36.38000 -34.97297 -33.41027 -32.71777 -31.08897 -30.30467 -28.97614 -26.95657 -25.68760 -24.02275 -23.24405 -22.72189 -21.57032 -20.85877 -20.10442 -19.15754 -17.61953 -17.01487 -16.60304 -16.32144 -15.66095 -15.45518 -14.88554 -14.69967 -14.57314 -14.20406 -13.97699 -13.82055 -13.70186 -13.53025 -13.23590 -13.13655 -12.83101 -12.70483 -12.53171 -12.47278 -12.29290 -12.15689 -11.79778 -11.59231 -11.47558 -11.34091 -11.11386 -10.99045 -10.93146 -10.82259 -10.78944 -10.42175 -10.30226 -10.25456 -10.00650 -9.66358 -9.63547 -8.85739 -8.69250 -6.90441 -5.75919 -3.03868 2.29459 2.76265 3.44800 3.49013 3.50048 3.95115 4.12543 4.18366 4.45582 4.59678 4.68604 4.72847 4.84679 4.90419 5.00419 5.06495 5.08291 5.17806 5.21945 5.32364 5.35970 5.41066 5.43313 5.49635 5.53025 5.56013 5.63230 5.66328 5.70408 5.73407 5.78682 5.86365 5.94798 5.96130 5.99427 6.05530 6.11266 6.20020 6.29345 6.40179 6.50197 6.64496 6.81485 6.93599 7.24135 7.70765 7.88881 8.43578 9.54570 10.12805 10.47642 11.47073 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002680 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.318261 B =10446.680024 C =11292.287391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.124 4.124 5 C 0.107 3.893 6 C -0.181 4.181 7 F -0.187 7.187 8 C 0.501 3.499 9 O -0.535 6.535 10 N -0.594 5.594 11 C 0.086 3.914 12 C -0.121 4.121 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.125 4.125 25 C 0.110 3.890 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 -19.102 -11.288 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.162 4.162 4 C -0.162 4.162 5 C 0.086 3.914 6 C -0.238 4.238 7 F -0.167 7.167 8 C 0.287 3.713 9 O -0.412 6.412 10 N -0.326 5.326 11 C -0.036 4.036 12 C -0.160 4.160 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.164 4.164 25 C -0.011 4.011 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.267 -19.554 -11.242 24.385 hybrid contribution 0.155 0.998 0.777 1.274 sum -9.111 -18.556 -10.465 23.170 Atomic orbital electron populations 1.21774 0.95763 1.01589 1.01903 1.21502 0.95894 0.96500 1.02222 1.21727 0.94037 0.97510 1.02896 1.21969 0.96286 0.92805 1.05108 1.21146 0.91779 0.95301 0.83202 1.22584 1.02948 1.01455 0.96833 1.92858 1.92499 1.83425 1.47961 1.20784 0.89418 0.83578 0.77568 1.90692 1.70186 1.31652 1.48684 1.48172 1.07716 1.08777 1.67971 1.22443 0.98147 0.84541 0.98491 1.21952 0.95706 1.02167 0.96135 1.21320 0.94823 0.95295 0.99904 1.20663 0.95630 0.87100 0.93541 1.42364 1.54056 1.10255 1.30920 1.19192 1.20886 0.94628 1.02244 0.91328 1.24726 0.99899 0.97477 0.98944 1.69642 1.35007 1.16702 1.37022 0.86265 0.77971 0.79686 0.82258 1.21319 1.21699 1.21303 1.21911 1.00248 0.96984 0.97260 1.21703 0.78648 1.02542 0.98252 0.92640 0.92746 0.92798 0.91926 0.91894 0.91200 0.91270 0.89141 0.90248 0.90283 0.89566 0.90066 0.91143 0.88122 0.91608 0.89312 0.91003 0.96414 0.96389 0.78272 0.93504 0.91553 0.90548 0.89226 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.15 0.37 -0.57 16 2 C -0.12 -0.85 5.93 -26.74 -0.16 -1.01 16 3 C -0.12 -0.95 4.64 -26.73 -0.12 -1.07 16 4 C -0.12 -1.18 4.02 -26.73 -0.11 -1.28 16 5 C 0.11 1.15 0.86 -91.77 -0.08 1.07 16 6 C -0.18 -1.48 8.11 37.16 0.30 -1.17 16 7 F -0.19 -2.30 14.03 2.25 0.03 -2.27 16 8 C 0.50 6.66 6.77 -10.99 -0.07 6.59 16 9 O -0.53 -8.38 15.29 5.55 0.08 -8.30 16 10 N -0.59 -7.65 2.97 -172.48 -0.51 -8.16 16 11 C 0.09 1.07 4.91 -3.49 -0.02 1.05 16 12 C -0.12 -1.86 5.26 -26.39 -0.14 -1.99 16 13 C -0.09 -1.49 2.19 -90.58 -0.20 -1.69 16 14 C 0.16 3.18 5.65 -4.04 -0.02 3.15 16 15 N -0.73 -18.36 5.32 -59.91 -0.32 -18.68 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 20 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.13 -1.66 5.36 -26.59 -0.14 -1.81 16 25 C 0.11 1.37 6.43 -3.69 -0.02 1.35 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 32 H 0.07 0.46 6.35 -51.93 -0.33 0.13 16 33 H 0.09 0.86 7.81 -51.93 -0.41 0.45 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.65 5.97 -51.93 -0.31 0.34 16 36 H 0.09 0.58 6.35 -51.93 -0.33 0.25 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.18 3.85 -51.93 -0.20 0.98 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.54 7.15 -51.93 -0.37 1.17 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 9.96 6.84 -40.82 -0.28 9.68 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.09 1.15 7.01 -51.93 -0.36 0.78 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -31.71 384.60 -8.77 -40.48 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.89 Total: 5.78 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.66 Total: -4.76 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.11 Total: -54.19 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.03 Total: -2.27 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.71 -8.77 -40.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205556579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.468 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds