Wall clock time and date at job start Tue Mar 31 2020 10:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47038 * 2 1 4 4 C 1.42902 * 113.99493 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47129 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.46834 * 64.99429 * 5 4 3 7 7 C 1.42906 * 114.00046 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47172 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 N 1.46500 * 109.47150 * 295.13157 * 14 13 12 16 16 C 1.36934 * 119.99724 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00570 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99915 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47313 * 60.00080 * 20 18 16 22 22 H 1.48500 * 109.46981 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47156 * 300.00129 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 25 25 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 26 26 H 1.08993 * 109.47566 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46541 * 300.00031 * 1 2 3 28 28 H 1.08997 * 109.47416 * 59.99789 * 1 2 3 29 29 H 1.08998 * 109.46847 * 239.99981 * 2 1 3 30 30 H 1.08997 * 109.47416 * 120.00211 * 2 1 3 31 31 H 1.09004 * 109.47280 * 60.00011 * 4 3 2 32 32 H 1.09003 * 109.47049 * 299.99764 * 4 3 2 33 33 H 1.09005 * 109.46901 * 305.00355 * 5 4 3 34 34 H 1.08992 * 109.47059 * 184.99792 * 5 4 3 35 35 H 1.09001 * 109.46424 * 60.00320 * 7 6 5 36 36 H 1.09001 * 109.47169 * 300.00611 * 7 6 5 37 37 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 38 38 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 39 39 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 40 40 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 41 41 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 42 42 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 43 43 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 44 44 H 0.96999 * 119.99704 * 359.97438 * 15 14 13 45 45 H 0.97003 * 120.00052 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.50232 * 301.42239 * 24 13 12 47 47 H 1.09007 * 109.52628 * 181.33900 * 24 13 12 48 48 H 1.08994 * 109.58580 * 353.38021 * 25 10 8 49 49 H 1.09006 * 109.57831 * 113.65514 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 8 3.3986 3.5457 1.2198 7 6 3.7194 4.9346 1.3214 8 6 3.2261 5.4689 2.6413 9 8 2.6563 4.7328 3.4186 10 7 3.4181 6.7649 2.9578 11 6 2.9424 7.3006 4.2405 12 6 4.1115 7.9839 4.9568 13 6 4.7288 9.0330 4.0242 14 6 5.8764 9.7426 4.7457 15 7 5.3457 10.4960 5.8846 16 6 6.1931 11.2153 6.6843 17 1 7.2527 11.2270 6.4758 18 6 5.6901 11.9296 7.7631 19 7 4.3988 11.9158 8.0170 20 14 6.8460 12.9115 8.8536 21 1 7.5439 13.9377 8.0380 22 1 6.0663 13.5791 9.9268 23 1 7.8467 11.9988 9.4627 24 6 5.2642 8.3488 2.7644 25 6 4.1061 7.6690 2.0261 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.3493 3.4411 -0.8430 34 1 4.9082 3.0253 -0.0911 35 1 3.2407 5.4784 0.5070 36 1 4.8000 5.0634 1.2586 37 1 2.1489 8.0262 4.0617 38 1 2.5611 6.4869 4.8574 39 1 3.7497 8.4669 5.8645 40 1 4.8646 7.2396 5.2156 41 1 3.9685 9.7628 3.7459 42 1 6.5940 9.0034 5.1017 43 1 6.3712 10.4267 4.0564 44 1 4.3941 10.4851 6.0721 45 1 4.0473 12.4146 8.7711 46 1 6.0066 7.6013 3.0438 47 1 5.7239 9.0925 2.1133 48 1 4.4949 7.0981 1.1830 49 1 3.4066 8.4231 1.6652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206956214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:27 Heat of formation + Delta-G solvation = -122.618460 kcal Electronic energy + Delta-G solvation = -26159.405273 eV Core-core repulsion = 22314.889639 eV Total energy + Delta-G solvation = -3844.515635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26316 -38.76086 -37.89008 -37.08366 -34.93987 -32.86197 -32.23979 -31.26562 -30.50139 -29.77277 -27.79508 -26.29059 -23.82052 -23.11194 -23.04405 -22.84575 -21.83465 -20.29171 -19.02040 -17.69832 -17.31019 -17.15912 -16.79046 -16.26123 -16.14714 -15.57148 -14.95636 -14.92964 -14.71952 -14.31054 -13.94213 -13.76431 -13.67452 -13.57217 -13.34859 -12.93440 -12.86197 -12.58434 -12.45242 -12.25941 -12.16199 -11.82424 -11.76703 -11.60441 -11.30725 -11.17338 -10.98461 -10.81041 -10.48285 -10.35773 -10.18819 -10.02752 -9.97448 -9.93495 -9.73857 -9.59085 -8.85573 -8.61320 -6.90329 -5.75303 -3.03625 2.56614 2.61524 3.31017 3.44902 3.49221 3.50365 3.57856 4.37364 4.58323 4.61284 4.70020 4.71011 4.77319 4.83464 4.88223 4.91208 4.97919 5.00909 5.03795 5.05905 5.07110 5.26043 5.29479 5.37696 5.42004 5.44465 5.57593 5.58968 5.63248 5.81245 5.81598 5.93137 5.99571 6.10944 6.16424 6.29882 6.37699 6.51165 6.66202 6.75945 6.81316 6.89784 6.92293 7.36314 7.70526 8.16036 8.43887 9.54878 10.13275 10.47797 11.47529 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.036220 B = 0.001918 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.876540 B =14595.857733 C =14956.976076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.046 3.954 8 C 0.515 3.485 9 O -0.522 6.522 10 N -0.608 5.608 11 C 0.112 3.888 12 C -0.123 4.123 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.127 4.127 25 C 0.107 3.893 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.018 0.982 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -20.065 -21.905 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.301 3.699 9 O -0.397 6.397 10 N -0.344 5.344 11 C -0.009 4.009 12 C -0.162 4.162 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.166 4.166 25 C -0.016 4.016 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.010 -20.345 -21.260 29.579 hybrid contribution 0.787 0.623 0.428 1.091 sum -2.223 -19.721 -20.832 28.772 Atomic orbital electron populations 1.21738 0.93671 1.02150 1.03357 1.22458 0.95819 0.83810 0.99870 1.87988 1.20353 1.26258 1.95366 1.22484 0.82437 0.95312 1.00921 1.22592 0.98420 0.92904 0.87583 1.88094 1.80754 1.20791 1.37645 1.22250 1.00390 0.84370 0.96420 1.20146 0.79908 0.81762 0.88051 1.90723 1.41370 1.56548 1.51062 1.48103 1.58123 1.08553 1.19640 1.21716 0.96807 0.98722 0.83700 1.21979 0.97179 0.97913 0.99097 1.21363 0.98915 0.96787 0.94272 1.20664 0.93462 0.93180 0.89624 1.42361 1.07673 1.57179 1.30384 1.19185 0.90589 1.21563 1.05815 0.91327 1.24734 0.95938 1.01134 0.99182 1.69643 1.10941 1.46442 1.31199 0.86267 0.79736 0.79930 0.80236 1.21323 1.21692 1.21313 1.21924 0.97128 1.00000 0.97527 1.21824 0.94860 0.93340 0.91601 0.91169 0.91553 0.91944 0.93642 0.93315 0.91757 0.92225 0.92214 0.91526 0.90345 0.90333 0.91340 0.89153 0.89302 0.91861 0.90913 0.96482 0.96438 0.78231 0.93473 0.91465 0.90482 0.90368 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.08 10.31 -40.09 -0.41 -4.50 16 4 C 0.07 0.53 6.32 37.16 0.23 0.76 16 5 C 0.06 0.50 6.32 37.16 0.23 0.74 16 6 O -0.35 -4.43 9.84 -59.73 -0.59 -5.02 16 7 C 0.05 0.47 4.76 36.00 0.17 0.64 16 8 C 0.51 7.28 7.77 -10.99 -0.09 7.19 16 9 O -0.52 -9.78 15.91 -14.35 -0.23 -10.01 16 10 N -0.61 -7.71 2.97 -172.74 -0.51 -8.22 16 11 C 0.11 1.59 6.42 -3.71 -0.02 1.56 16 12 C -0.12 -1.93 5.27 -26.45 -0.14 -2.07 16 13 C -0.09 -1.43 2.19 -90.42 -0.20 -1.63 16 14 C 0.16 3.10 5.65 -4.04 -0.02 3.07 16 15 N -0.73 -18.29 5.32 -59.91 -0.32 -18.61 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 20 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.13 -1.43 5.37 -26.59 -0.14 -1.57 16 25 C 0.11 1.02 6.34 -3.68 -0.02 0.99 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.61 7.94 -51.93 -0.41 0.20 16 36 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.41 7.00 -51.93 -0.36 1.04 16 39 H 0.09 1.60 7.16 -51.93 -0.37 1.23 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 48 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -35.67 394.27 -8.90 -44.57 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.87 Total: 3.57 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 0.39 Total: 2.30 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.11 Total: -54.32 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.23 Total: -19.53 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.67 -8.90 -44.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206956214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.050 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds