Wall clock time and date at job start Tue Mar 31 2020 10:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99540 * 2 1 4 4 H 1.48512 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47269 * 299.99249 * 3 2 1 6 6 H 1.48496 * 109.47423 * 60.00080 * 3 2 1 7 7 C 1.37874 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53505 * 114.17328 * 179.97438 * 9 7 2 11 11 N 1.47475 * 87.93600 * 139.67414 * 10 9 7 12 12 C 1.46905 * 110.99983 * 221.30042 * 11 10 9 13 13 C 1.53005 * 109.47007 * 166.37467 * 12 11 10 14 14 H 1.08999 * 109.46617 * 303.28413 * 13 12 11 15 15 C 1.53045 * 109.46090 * 63.26255 * 13 12 11 16 16 C 1.53121 * 109.27670 * 179.19272 * 15 13 12 17 17 C 1.53118 * 109.15994 * 302.34576 * 16 15 13 18 18 C 1.53031 * 109.27927 * 57.65658 * 17 16 15 19 19 N 1.46845 * 109.46232 * 183.31363 * 13 12 11 20 20 C 1.46905 * 111.00019 * 54.14460 * 19 13 12 21 21 C 1.50701 * 109.46974 * 176.06465 * 20 19 13 22 22 C 1.38233 * 119.99727 * 269.72682 * 21 20 19 23 23 C 1.38239 * 119.99834 * 179.76699 * 22 21 20 24 24 C 1.38234 * 120.00026 * 0.50992 * 23 22 21 25 25 C 1.38229 * 119.99849 * 359.74083 * 24 23 22 26 26 C 1.38231 * 120.00414 * 89.99952 * 21 20 19 27 27 C 1.47485 * 87.83446 * 332.98991 * 11 10 9 28 28 H 0.96993 * 120.00274 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.38325 * 46.91775 * 9 7 2 30 30 H 1.09004 * 113.48034 * 24.90576 * 10 9 7 31 31 H 1.09005 * 113.48116 * 254.44117 * 10 9 7 32 32 H 1.08996 * 109.47029 * 286.37499 * 12 11 10 33 33 H 1.08997 * 109.47225 * 46.37543 * 12 11 10 34 34 H 1.08999 * 109.49723 * 299.13234 * 15 13 12 35 35 H 1.08999 * 109.50159 * 59.21354 * 15 13 12 36 36 H 1.09006 * 109.51702 * 62.24950 * 16 15 13 37 37 H 1.08999 * 109.52017 * 182.37208 * 16 15 13 38 38 H 1.09004 * 109.49713 * 177.59492 * 17 16 15 39 39 H 1.08999 * 109.50339 * 297.67415 * 17 16 15 40 40 H 1.08998 * 109.46928 * 60.83185 * 18 17 16 41 41 H 1.08998 * 109.46136 * 180.81413 * 18 17 16 42 42 H 1.09004 * 109.46884 * 296.06267 * 20 19 13 43 43 H 1.08996 * 109.46681 * 56.06526 * 20 19 13 44 44 H 1.08004 * 120.00060 * 0.02562 * 22 21 20 45 45 H 1.08003 * 119.99722 * 180.22703 * 23 22 21 46 46 H 1.08001 * 119.99888 * 179.72183 * 24 23 22 47 47 H 1.07996 * 120.00287 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.99843 * 0.02562 * 26 21 20 49 49 H 1.08996 * 113.47678 * 141.77989 * 27 11 10 50 50 H 1.09003 * 113.47272 * 272.24481 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2077 -4.3583 0.9543 12 6 1.9262 -5.0862 2.0088 13 6 0.9608 -5.4161 3.1492 14 1 0.5088 -4.4962 3.5200 15 6 -0.1356 -6.3517 2.6346 16 6 -1.0875 -6.6951 3.7837 17 6 -0.2894 -7.3340 4.9235 18 6 0.8114 -6.3701 5.3718 19 7 1.6957 -6.0733 4.2376 20 6 2.8435 -5.2613 4.6632 21 6 3.5143 -5.9185 5.8419 22 6 3.1163 -5.6035 7.1276 23 6 3.7283 -6.2100 8.2087 24 6 4.7454 -7.1236 8.0042 25 6 5.1468 -7.4347 6.7186 26 6 4.5312 -6.8322 5.6374 27 6 0.8556 -2.9966 1.3979 28 1 -0.4850 0.8400 -0.0004 29 1 0.4433 -2.5323 -0.7305 30 1 3.1392 -3.5650 0.4216 31 1 2.1866 -4.2528 -0.9626 32 1 2.3340 -6.0103 1.5993 33 1 2.7390 -4.4672 2.3885 34 1 -0.6909 -5.8575 1.8373 35 1 0.3168 -7.2659 2.2504 36 1 -1.5694 -5.7852 4.1417 37 1 -1.8458 -7.3946 3.4318 38 1 -0.9547 -7.5418 5.7616 39 1 0.1600 -8.2644 4.5762 40 1 0.3602 -5.4456 5.7320 41 1 1.3907 -6.8280 6.1736 42 1 3.5541 -5.1775 3.8409 43 1 2.4993 -4.2673 4.9488 44 1 2.3244 -4.8867 7.2875 45 1 3.4148 -5.9666 9.2132 46 1 5.2265 -7.5940 8.8490 47 1 5.9417 -8.1481 6.5588 48 1 4.8454 -7.0747 4.6330 49 1 -0.2045 -2.8725 1.6191 50 1 1.4996 -2.6185 2.1919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208582645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:02 Heat of formation + Delta-G solvation = 57.206487 kcal Electronic energy + Delta-G solvation = -26670.601175 eV Core-core repulsion = 23277.025349 eV Total energy + Delta-G solvation = -3393.575826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14567 -39.10945 -38.03235 -34.12208 -33.02656 -31.94130 -31.05471 -30.66953 -28.49968 -26.40268 -25.53667 -24.77352 -23.40512 -22.85690 -22.59791 -21.04536 -20.53900 -19.47112 -18.52636 -16.88376 -16.68852 -16.03659 -15.64720 -15.37058 -14.90706 -14.70164 -14.48563 -14.19381 -14.01330 -13.68115 -13.49247 -13.38133 -13.28215 -13.19230 -12.70921 -12.44904 -12.10022 -11.87745 -11.75156 -11.66693 -11.29260 -11.16426 -11.10740 -11.00899 -10.96044 -10.64748 -10.51199 -10.27369 -10.19164 -10.13146 -9.61291 -9.18220 -9.02319 -8.92985 -8.89273 -8.45121 -8.19349 -7.94548 -6.06579 -4.10813 1.19620 1.27797 3.26455 3.34953 3.38438 3.55860 4.05727 4.39375 4.63145 4.72422 4.83076 4.86150 4.94723 4.98925 5.01811 5.15684 5.23041 5.23077 5.30159 5.37437 5.46309 5.52941 5.55381 5.65298 5.68698 5.78627 5.87330 5.90111 5.93187 5.99512 5.99584 6.09532 6.14195 6.18423 6.30194 6.32446 6.37034 6.38570 6.44823 6.49985 6.52557 6.62845 6.69152 6.73529 6.86360 7.10304 7.13292 7.20191 7.27116 7.72366 7.90934 8.09834 8.37154 8.92682 9.54239 11.03015 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.003364 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.332930 B = 8321.212767 C = 9449.822286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.042 3.958 10 C -0.004 4.004 11 N -0.480 5.480 12 C 0.027 3.973 13 C 0.094 3.906 14 H 0.042 0.958 15 C -0.099 4.099 16 C -0.124 4.124 17 C -0.114 4.114 18 C 0.053 3.947 19 N -0.526 5.526 20 C 0.087 3.913 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.099 4.099 27 C 0.006 3.994 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.061 0.939 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -15.298 14.534 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.132 4.132 11 N -0.203 5.203 12 C -0.102 4.102 13 C -0.014 4.014 14 H 0.060 0.940 15 C -0.137 4.137 16 C -0.161 4.161 17 C -0.152 4.152 18 C -0.075 4.075 19 N -0.251 5.251 20 C -0.040 4.040 21 C -0.073 4.073 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.123 4.123 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.060 0.940 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.080 0.920 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.928 -16.112 14.136 21.791 hybrid contribution 0.831 2.210 0.898 2.526 sum 4.758 -13.902 15.033 21.022 Atomic orbital electron populations 1.69973 1.05971 1.26601 1.49795 1.25013 0.94811 0.99135 0.94648 0.86585 0.80213 0.83847 0.77653 1.19716 1.20873 1.21031 1.21079 0.92765 0.90313 1.51209 0.92444 1.20092 0.94271 0.90812 0.92541 1.23992 0.95643 0.97632 0.95977 1.68849 1.27327 1.14002 1.10109 1.22676 0.95133 0.99377 0.92996 1.21566 0.93876 0.95430 0.90553 0.93979 1.21488 0.95475 0.99317 0.97429 1.21630 0.97955 1.00325 0.96212 1.21568 0.96515 0.98997 0.98114 1.22172 0.94034 0.98051 0.93234 1.62025 1.08795 1.45582 1.08734 1.21161 0.93513 0.94109 0.95236 1.19821 0.96218 0.97151 0.94134 1.21109 0.99882 1.00079 0.92265 1.21095 0.96900 0.97439 0.98652 1.21120 0.97678 0.98468 0.97026 1.21149 1.00072 1.00075 0.92720 1.21062 0.95677 0.95865 0.99123 1.23979 0.99875 0.87223 1.01244 0.92945 0.91828 0.92964 0.92038 0.91043 0.94613 0.90090 0.91679 0.92491 0.92056 0.92115 0.91346 0.95340 0.90408 0.89337 0.93962 0.86402 0.86276 0.86373 0.86193 0.85856 0.92035 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.26 55.43 0.74 -24.73 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.97 8.82 -34.44 -0.30 -14.28 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 1.04 3.77 -91.25 -0.34 0.70 16 10 C 0.00 -0.08 7.27 -7.56 -0.05 -0.13 16 11 N -0.48 -9.48 5.83 -244.64 -1.43 -10.91 16 12 C 0.03 0.46 3.97 -3.82 -0.02 0.44 16 13 C 0.09 1.42 1.91 -67.72 -0.13 1.29 16 14 H 0.04 0.73 7.45 -51.93 -0.39 0.34 16 15 C -0.10 -1.42 5.24 -26.65 -0.14 -1.56 16 16 C -0.12 -1.51 6.00 -26.61 -0.16 -1.67 16 17 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 18 C 0.05 0.64 4.79 -3.84 -0.02 0.62 16 19 N -0.53 -7.04 4.59 -228.12 -1.05 -8.08 16 20 C 0.09 1.13 4.61 -4.97 -0.02 1.11 16 21 C -0.07 -0.85 4.38 -104.63 -0.46 -1.31 16 22 C -0.11 -1.23 7.75 -39.58 -0.31 -1.54 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 25 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 26 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 27 C 0.01 0.13 6.34 -7.55 -0.05 0.08 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 30 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.62 5.64 -51.93 -0.29 0.32 16 34 H 0.08 1.29 7.73 -51.93 -0.40 0.89 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.91 5.61 -51.93 -0.29 0.62 16 42 H 0.09 1.18 6.33 -51.93 -0.33 0.85 16 43 H 0.04 0.58 8.08 -51.93 -0.42 0.17 16 44 H 0.12 1.20 8.05 -52.48 -0.42 0.77 16 45 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 49 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 50 H 0.05 1.12 7.72 -51.93 -0.40 0.72 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -27.98 384.78 -13.60 -41.58 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.80 Total: 2.42 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -3.84 Total: -22.08 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -1.74 Total: -43.72 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.98 -13.60 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208582645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.791 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds