Wall clock time and date at job start Tue Mar 31 2020 10:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99540 * 2 1 4 4 H 1.48512 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47269 * 299.99249 * 3 2 1 6 6 H 1.48496 * 109.47423 * 60.00080 * 3 2 1 7 7 C 1.37874 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53505 * 114.17328 * 179.97438 * 9 7 2 11 11 N 1.47475 * 87.93600 * 139.67414 * 10 9 7 12 12 C 1.46905 * 110.99983 * 221.30042 * 11 10 9 13 13 C 1.53005 * 109.47007 * 166.37467 * 12 11 10 14 14 H 1.08999 * 109.46617 * 303.28413 * 13 12 11 15 15 C 1.53045 * 109.46090 * 63.26255 * 13 12 11 16 16 C 1.53121 * 109.27670 * 179.19272 * 15 13 12 17 17 C 1.53118 * 109.15994 * 302.34576 * 16 15 13 18 18 C 1.53031 * 109.27927 * 57.65658 * 17 16 15 19 19 N 1.46845 * 109.46232 * 183.31363 * 13 12 11 20 20 C 1.46905 * 111.00019 * 54.14460 * 19 13 12 21 21 C 1.50701 * 109.46974 * 176.06465 * 20 19 13 22 22 C 1.38233 * 119.99727 * 269.72682 * 21 20 19 23 23 C 1.38239 * 119.99834 * 179.76699 * 22 21 20 24 24 C 1.38234 * 120.00026 * 0.50992 * 23 22 21 25 25 C 1.38229 * 119.99849 * 359.74083 * 24 23 22 26 26 C 1.38231 * 120.00414 * 89.99952 * 21 20 19 27 27 C 1.47485 * 87.83446 * 332.98991 * 11 10 9 28 28 H 0.96993 * 120.00274 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.38325 * 46.91775 * 9 7 2 30 30 H 1.09004 * 113.48034 * 24.90576 * 10 9 7 31 31 H 1.09005 * 113.48116 * 254.44117 * 10 9 7 32 32 H 1.08996 * 109.47029 * 286.37499 * 12 11 10 33 33 H 1.08997 * 109.47225 * 46.37543 * 12 11 10 34 34 H 1.08999 * 109.49723 * 299.13234 * 15 13 12 35 35 H 1.08999 * 109.50159 * 59.21354 * 15 13 12 36 36 H 1.09006 * 109.51702 * 62.24950 * 16 15 13 37 37 H 1.08999 * 109.52017 * 182.37208 * 16 15 13 38 38 H 1.09004 * 109.49713 * 177.59492 * 17 16 15 39 39 H 1.08999 * 109.50339 * 297.67415 * 17 16 15 40 40 H 1.08998 * 109.46928 * 60.83185 * 18 17 16 41 41 H 1.08998 * 109.46136 * 180.81413 * 18 17 16 42 42 H 1.09004 * 109.46884 * 296.06267 * 20 19 13 43 43 H 1.08996 * 109.46681 * 56.06526 * 20 19 13 44 44 H 1.08004 * 120.00060 * 0.02562 * 22 21 20 45 45 H 1.08003 * 119.99722 * 180.22703 * 23 22 21 46 46 H 1.08001 * 119.99888 * 179.72183 * 24 23 22 47 47 H 1.07996 * 120.00287 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.99843 * 0.02562 * 26 21 20 49 49 H 1.08996 * 113.47678 * 141.77989 * 27 11 10 50 50 H 1.09003 * 113.47272 * 272.24481 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2077 -4.3583 0.9543 12 6 1.9262 -5.0862 2.0088 13 6 0.9608 -5.4161 3.1492 14 1 0.5088 -4.4962 3.5200 15 6 -0.1356 -6.3517 2.6346 16 6 -1.0875 -6.6951 3.7837 17 6 -0.2894 -7.3340 4.9235 18 6 0.8114 -6.3701 5.3718 19 7 1.6957 -6.0733 4.2376 20 6 2.8435 -5.2613 4.6632 21 6 3.5143 -5.9185 5.8419 22 6 3.1163 -5.6035 7.1276 23 6 3.7283 -6.2100 8.2087 24 6 4.7454 -7.1236 8.0042 25 6 5.1468 -7.4347 6.7186 26 6 4.5312 -6.8322 5.6374 27 6 0.8556 -2.9966 1.3979 28 1 -0.4850 0.8400 -0.0004 29 1 0.4433 -2.5323 -0.7305 30 1 3.1392 -3.5650 0.4216 31 1 2.1866 -4.2528 -0.9626 32 1 2.3340 -6.0103 1.5993 33 1 2.7390 -4.4672 2.3885 34 1 -0.6909 -5.8575 1.8373 35 1 0.3168 -7.2659 2.2504 36 1 -1.5694 -5.7852 4.1417 37 1 -1.8458 -7.3946 3.4318 38 1 -0.9547 -7.5418 5.7616 39 1 0.1600 -8.2644 4.5762 40 1 0.3602 -5.4456 5.7320 41 1 1.3907 -6.8280 6.1736 42 1 3.5541 -5.1775 3.8409 43 1 2.4993 -4.2673 4.9488 44 1 2.3244 -4.8867 7.2875 45 1 3.4148 -5.9666 9.2132 46 1 5.2265 -7.5940 8.8490 47 1 5.9417 -8.1481 6.5588 48 1 4.8454 -7.0747 4.6330 49 1 -0.2045 -2.8725 1.6191 50 1 1.4996 -2.6185 2.1919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208582645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:01 Heat of formation + Delta-G solvation = 41.893726 kcal Electronic energy + Delta-G solvation = -26671.265186 eV Core-core repulsion = 23277.025349 eV Total energy + Delta-G solvation = -3394.239837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34787 -40.38570 -39.20326 -35.09456 -34.89779 -33.41171 -31.82444 -31.58928 -30.08372 -27.62938 -27.08809 -26.55043 -24.75451 -24.07688 -23.38698 -22.09090 -21.68185 -20.73250 -20.27153 -18.69596 -17.64903 -17.21690 -16.88907 -16.46713 -16.33356 -16.19211 -15.84546 -15.45164 -15.05822 -14.96176 -14.76796 -14.62589 -14.28395 -14.23355 -13.80144 -13.71404 -13.40161 -13.28414 -13.22330 -13.01519 -12.95665 -12.71552 -12.48184 -12.29961 -12.00800 -11.88567 -11.79877 -11.77359 -11.58653 -11.28145 -11.08579 -11.06273 -10.85929 -10.52324 -9.78815 -9.77706 -9.62929 -9.28732 -8.17338 -6.28544 0.41214 0.51733 1.39276 1.41209 1.52719 2.40125 2.65070 3.03778 3.11943 3.43403 3.67425 3.79899 3.82938 3.95695 4.02326 4.13542 4.17069 4.22520 4.27524 4.29787 4.34276 4.35637 4.48486 4.52875 4.59730 4.64767 4.65688 4.69221 4.76720 4.79833 4.84303 4.90107 4.92539 4.96485 5.04702 5.10278 5.11073 5.17723 5.19382 5.23826 5.35073 5.44973 5.49192 5.57397 5.60647 5.63557 5.71884 5.83418 6.01397 6.11624 6.14097 6.28334 6.38053 6.80973 7.40003 8.92604 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.003364 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.332930 B = 8321.212767 C = 9449.822286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.010 3.990 11 N -0.473 5.473 12 C 0.032 3.968 13 C 0.101 3.899 14 H 0.016 0.984 15 C -0.096 4.096 16 C -0.120 4.120 17 C -0.109 4.109 18 C 0.054 3.946 19 N -0.522 5.522 20 C 0.090 3.910 21 C -0.088 4.088 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.112 4.112 27 C 0.022 3.978 28 H 0.263 0.737 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.117 0.883 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.124 0.876 49 H 0.043 0.957 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -16.792 16.210 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.004 3.996 10 C -0.118 4.118 11 N -0.195 5.195 12 C -0.097 4.097 13 C -0.007 4.007 14 H 0.034 0.966 15 C -0.134 4.134 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.074 4.074 19 N -0.247 5.247 20 C -0.037 4.037 21 C -0.088 4.088 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.107 4.107 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.135 0.865 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.142 0.858 49 H 0.061 0.939 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.341 -17.622 15.814 24.273 hybrid contribution 0.418 2.619 0.407 2.683 sum 5.759 -15.003 16.221 22.834 Atomic orbital electron populations 1.70095 1.07495 1.27514 1.50883 1.25821 0.95613 1.02676 0.94329 0.85533 0.79186 0.79447 0.77676 1.18821 1.20395 1.20696 1.21399 0.92970 0.91504 1.50950 0.92372 1.20036 0.94498 0.92046 0.92993 1.23829 0.95245 0.95714 0.97042 1.68791 1.27630 1.12401 1.10709 1.22672 0.95122 0.99191 0.92680 1.21410 0.93804 0.94838 0.90673 0.96610 1.21428 0.95382 0.98842 0.97724 1.21606 0.97911 1.00472 0.95808 1.21556 0.96271 0.98470 0.98323 1.22224 0.94205 0.98025 0.92897 1.62059 1.08849 1.44866 1.08899 1.21093 0.93242 0.93557 0.95809 1.19725 0.97093 0.98156 0.93824 1.21193 1.00335 1.00521 0.92415 1.21383 0.96682 0.97047 0.99200 1.21483 0.97155 0.97852 0.97717 1.21439 1.00251 1.00033 0.92532 1.21185 0.95824 0.96138 0.99877 1.23650 0.98484 0.88901 0.99686 0.92847 0.95011 0.92335 0.90599 0.89755 0.94934 0.92202 0.91187 0.93367 0.90438 0.90014 0.91016 0.96156 0.89575 0.90054 0.95583 0.86534 0.84210 0.83765 0.84071 0.85758 0.93877 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 13.26 21.45 0.28 -54.06 16 2 C 0.01 0.83 5.46 84.65 0.46 1.30 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.53 -29.26 8.82 25.60 0.23 -29.03 16 8 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 9 C 0.02 1.20 3.77 -11.20 -0.04 1.16 16 10 C 0.01 0.44 7.27 83.57 0.61 1.05 16 11 N -0.47 -18.95 5.83 -927.91 -5.41 -24.36 16 12 C 0.03 1.08 3.97 86.30 0.34 1.43 16 13 C 0.10 3.11 1.91 44.94 0.09 3.20 16 14 H 0.02 0.57 7.45 -2.39 -0.02 0.56 16 15 C -0.10 -2.72 5.24 30.65 0.16 -2.56 16 16 C -0.12 -2.82 6.00 30.67 0.18 -2.64 16 17 C -0.11 -2.23 6.09 30.64 0.19 -2.04 16 18 C 0.05 1.26 4.79 86.32 0.41 1.67 16 19 N -0.52 -13.82 4.59 -875.63 -4.02 -17.84 16 20 C 0.09 2.37 4.61 85.56 0.39 2.77 16 21 C -0.09 -2.00 4.38 -19.87 -0.09 -2.08 16 22 C -0.13 -2.59 7.75 22.27 0.17 -2.42 16 23 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 24 C -0.12 -1.90 10.05 22.27 0.22 -1.67 16 25 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 26 C -0.11 -2.30 9.70 22.27 0.22 -2.09 16 27 C 0.02 1.04 6.34 83.57 0.53 1.57 16 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.03 1.82 8.11 -2.39 -0.02 1.80 16 30 H 0.06 2.39 7.66 -2.39 -0.02 2.38 16 31 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.03 1.13 5.64 -2.39 -0.01 1.12 16 34 H 0.06 1.94 7.73 -2.39 -0.02 1.93 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.09 1.90 5.61 -2.39 -0.01 1.89 16 42 H 0.08 2.21 6.33 -2.38 -0.02 2.19 16 43 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 44 H 0.12 2.34 8.05 -2.91 -0.02 2.31 16 45 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 47 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 48 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 49 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.04 1.96 7.72 -2.39 -0.02 1.95 16 Total: -1.00 -60.88 384.78 -1.72 -62.60 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.88 Total: 22.28 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 4.52 Total: -34.12 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -9.15 Total: -96.26 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -60.88 -1.72 -62.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208582645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.493 kcal (2) G-P(sol) polarization free energy of solvation -60.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds