Wall clock time and date at job start Tue Mar 31 2020 10:59:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86800 * 119.99540 * 2 1
4 4 H 1.48512 * 109.46855 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47269 * 299.99249 * 3 2 1
6 6 H 1.48496 * 109.47423 * 60.00080 * 3 2 1
7 7 C 1.37874 * 120.00311 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00191 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00046 * 0.02562 * 7 2 1
10 10 C 1.53505 * 114.17328 * 179.97438 * 9 7 2
11 11 N 1.47475 * 87.93600 * 139.67414 * 10 9 7
12 12 C 1.46905 * 110.99983 * 221.30042 * 11 10 9
13 13 C 1.53005 * 109.47007 * 166.37467 * 12 11 10
14 14 H 1.08999 * 109.46617 * 303.28413 * 13 12 11
15 15 C 1.53045 * 109.46090 * 63.26255 * 13 12 11
16 16 C 1.53121 * 109.27670 * 179.19272 * 15 13 12
17 17 C 1.53118 * 109.15994 * 302.34576 * 16 15 13
18 18 C 1.53031 * 109.27927 * 57.65658 * 17 16 15
19 19 N 1.46845 * 109.46232 * 183.31363 * 13 12 11
20 20 C 1.46905 * 111.00019 * 54.14460 * 19 13 12
21 21 C 1.50701 * 109.46974 * 176.06465 * 20 19 13
22 22 C 1.38233 * 119.99727 * 269.72682 * 21 20 19
23 23 C 1.38239 * 119.99834 * 179.76699 * 22 21 20
24 24 C 1.38234 * 120.00026 * 0.50992 * 23 22 21
25 25 C 1.38229 * 119.99849 * 359.74083 * 24 23 22
26 26 C 1.38231 * 120.00414 * 89.99952 * 21 20 19
27 27 C 1.47485 * 87.83446 * 332.98991 * 11 10 9
28 28 H 0.96993 * 120.00274 * 0.02562 * 1 2 3
29 29 H 1.08999 * 113.38325 * 46.91775 * 9 7 2
30 30 H 1.09004 * 113.48034 * 24.90576 * 10 9 7
31 31 H 1.09005 * 113.48116 * 254.44117 * 10 9 7
32 32 H 1.08996 * 109.47029 * 286.37499 * 12 11 10
33 33 H 1.08997 * 109.47225 * 46.37543 * 12 11 10
34 34 H 1.08999 * 109.49723 * 299.13234 * 15 13 12
35 35 H 1.08999 * 109.50159 * 59.21354 * 15 13 12
36 36 H 1.09006 * 109.51702 * 62.24950 * 16 15 13
37 37 H 1.08999 * 109.52017 * 182.37208 * 16 15 13
38 38 H 1.09004 * 109.49713 * 177.59492 * 17 16 15
39 39 H 1.08999 * 109.50339 * 297.67415 * 17 16 15
40 40 H 1.08998 * 109.46928 * 60.83185 * 18 17 16
41 41 H 1.08998 * 109.46136 * 180.81413 * 18 17 16
42 42 H 1.09004 * 109.46884 * 296.06267 * 20 19 13
43 43 H 1.08996 * 109.46681 * 56.06526 * 20 19 13
44 44 H 1.08004 * 120.00060 * 0.02562 * 22 21 20
45 45 H 1.08003 * 119.99722 * 180.22703 * 23 22 21
46 46 H 1.08001 * 119.99888 * 179.72183 * 24 23 22
47 47 H 1.07996 * 120.00287 * 179.97438 * 25 24 23
48 48 H 1.08002 * 119.99843 * 0.02562 * 26 21 20
49 49 H 1.08996 * 113.47678 * 141.77989 * 27 11 10
50 50 H 1.09003 * 113.47272 * 272.24481 * 27 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8903 2.3964 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.1497 -3.7437 0.0005
11 7 1.2077 -4.3583 0.9543
12 6 1.9262 -5.0862 2.0088
13 6 0.9608 -5.4161 3.1492
14 1 0.5088 -4.4962 3.5200
15 6 -0.1356 -6.3517 2.6346
16 6 -1.0875 -6.6951 3.7837
17 6 -0.2894 -7.3340 4.9235
18 6 0.8114 -6.3701 5.3718
19 7 1.6957 -6.0733 4.2376
20 6 2.8435 -5.2613 4.6632
21 6 3.5143 -5.9185 5.8419
22 6 3.1163 -5.6035 7.1276
23 6 3.7283 -6.2100 8.2087
24 6 4.7454 -7.1236 8.0042
25 6 5.1468 -7.4347 6.7186
26 6 4.5312 -6.8322 5.6374
27 6 0.8556 -2.9966 1.3979
28 1 -0.4850 0.8400 -0.0004
29 1 0.4433 -2.5323 -0.7305
30 1 3.1392 -3.5650 0.4216
31 1 2.1866 -4.2528 -0.9626
32 1 2.3340 -6.0103 1.5993
33 1 2.7390 -4.4672 2.3885
34 1 -0.6909 -5.8575 1.8373
35 1 0.3168 -7.2659 2.2504
36 1 -1.5694 -5.7852 4.1417
37 1 -1.8458 -7.3946 3.4318
38 1 -0.9547 -7.5418 5.7616
39 1 0.1600 -8.2644 4.5762
40 1 0.3602 -5.4456 5.7320
41 1 1.3907 -6.8280 6.1736
42 1 3.5541 -5.1775 3.8409
43 1 2.4993 -4.2673 4.9488
44 1 2.3244 -4.8867 7.2875
45 1 3.4148 -5.9666 9.2132
46 1 5.2265 -7.5940 8.8490
47 1 5.9417 -8.1481 6.5588
48 1 4.8454 -7.0747 4.6330
49 1 -0.2045 -2.8725 1.6191
50 1 1.4996 -2.6185 2.1919
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001208582645.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:59:01
Heat of formation + Delta-G solvation = 41.893726 kcal
Electronic energy + Delta-G solvation = -26671.265186 eV
Core-core repulsion = 23277.025349 eV
Total energy + Delta-G solvation = -3394.239837 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.34787 -40.38570 -39.20326 -35.09456 -34.89779 -33.41171 -31.82444 -31.58928
-30.08372 -27.62938 -27.08809 -26.55043 -24.75451 -24.07688 -23.38698 -22.09090
-21.68185 -20.73250 -20.27153 -18.69596 -17.64903 -17.21690 -16.88907 -16.46713
-16.33356 -16.19211 -15.84546 -15.45164 -15.05822 -14.96176 -14.76796 -14.62589
-14.28395 -14.23355 -13.80144 -13.71404 -13.40161 -13.28414 -13.22330 -13.01519
-12.95665 -12.71552 -12.48184 -12.29961 -12.00800 -11.88567 -11.79877 -11.77359
-11.58653 -11.28145 -11.08579 -11.06273 -10.85929 -10.52324 -9.78815 -9.77706
-9.62929 -9.28732 -8.17338 -6.28544 0.41214 0.51733 1.39276 1.41209
1.52719 2.40125 2.65070 3.03778 3.11943 3.43403 3.67425 3.79899
3.82938 3.95695 4.02326 4.13542 4.17069 4.22520 4.27524 4.29787
4.34276 4.35637 4.48486 4.52875 4.59730 4.64767 4.65688 4.69221
4.76720 4.79833 4.84303 4.90107 4.92539 4.96485 5.04702 5.10278
5.11073 5.17723 5.19382 5.23826 5.35073 5.44973 5.49192 5.57397
5.60647 5.63557 5.71884 5.83418 6.01397 6.11624 6.14097 6.28334
6.38053 6.80973 7.40003 8.92604
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.013424 B = 0.003364 C = 0.002962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2085.332930 B = 8321.212767 C = 9449.822286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C 0.015 3.985
3 Si 0.956 3.044
4 H -0.264 1.264
5 H -0.278 1.278
6 H -0.281 1.281
7 C -0.530 4.530
8 H 0.058 0.942
9 C 0.023 3.977
10 C 0.010 3.990
11 N -0.473 5.473
12 C 0.032 3.968
13 C 0.101 3.899
14 H 0.016 0.984
15 C -0.096 4.096
16 C -0.120 4.120
17 C -0.109 4.109
18 C 0.054 3.946
19 N -0.522 5.522
20 C 0.090 3.910
21 C -0.088 4.088
22 C -0.126 4.126
23 C -0.125 4.125
24 C -0.124 4.124
25 C -0.125 4.125
26 C -0.112 4.112
27 C 0.022 3.978
28 H 0.263 0.737
29 H 0.032 0.968
30 H 0.058 0.942
31 H 0.076 0.924
32 H 0.084 0.916
33 H 0.032 0.968
34 H 0.059 0.941
35 H 0.069 0.931
36 H 0.047 0.953
37 H 0.077 0.923
38 H 0.081 0.919
39 H 0.071 0.929
40 H 0.020 0.980
41 H 0.086 0.914
42 H 0.081 0.919
43 H 0.026 0.974
44 H 0.117 0.883
45 H 0.140 0.860
46 H 0.145 0.855
47 H 0.141 0.859
48 H 0.124 0.876
49 H 0.043 0.957
50 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.832 -16.792 16.210 24.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.184 4.184
3 Si 0.782 3.218
4 H -0.188 1.188
5 H -0.204 1.204
6 H -0.207 1.207
7 C -0.568 4.568
8 H 0.076 0.924
9 C 0.004 3.996
10 C -0.118 4.118
11 N -0.195 5.195
12 C -0.097 4.097
13 C -0.007 4.007
14 H 0.034 0.966
15 C -0.134 4.134
16 C -0.158 4.158
17 C -0.146 4.146
18 C -0.074 4.074
19 N -0.247 5.247
20 C -0.037 4.037
21 C -0.088 4.088
22 C -0.145 4.145
23 C -0.143 4.143
24 C -0.142 4.142
25 C -0.143 4.143
26 C -0.130 4.130
27 C -0.107 4.107
28 H 0.072 0.928
29 H 0.050 0.950
30 H 0.077 0.923
31 H 0.094 0.906
32 H 0.102 0.898
33 H 0.051 0.949
34 H 0.078 0.922
35 H 0.088 0.912
36 H 0.066 0.934
37 H 0.096 0.904
38 H 0.100 0.900
39 H 0.090 0.910
40 H 0.038 0.962
41 H 0.104 0.896
42 H 0.099 0.901
43 H 0.044 0.956
44 H 0.135 0.865
45 H 0.158 0.842
46 H 0.162 0.838
47 H 0.159 0.841
48 H 0.142 0.858
49 H 0.061 0.939
50 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 5.341 -17.622 15.814 24.273
hybrid contribution 0.418 2.619 0.407 2.683
sum 5.759 -15.003 16.221 22.834
Atomic orbital electron populations
1.70095 1.07495 1.27514 1.50883 1.25821 0.95613 1.02676 0.94329
0.85533 0.79186 0.79447 0.77676 1.18821 1.20395 1.20696 1.21399
0.92970 0.91504 1.50950 0.92372 1.20036 0.94498 0.92046 0.92993
1.23829 0.95245 0.95714 0.97042 1.68791 1.27630 1.12401 1.10709
1.22672 0.95122 0.99191 0.92680 1.21410 0.93804 0.94838 0.90673
0.96610 1.21428 0.95382 0.98842 0.97724 1.21606 0.97911 1.00472
0.95808 1.21556 0.96271 0.98470 0.98323 1.22224 0.94205 0.98025
0.92897 1.62059 1.08849 1.44866 1.08899 1.21093 0.93242 0.93557
0.95809 1.19725 0.97093 0.98156 0.93824 1.21193 1.00335 1.00521
0.92415 1.21383 0.96682 0.97047 0.99200 1.21483 0.97155 0.97852
0.97717 1.21439 1.00251 1.00033 0.92532 1.21185 0.95824 0.96138
0.99877 1.23650 0.98484 0.88901 0.99686 0.92847 0.95011 0.92335
0.90599 0.89755 0.94934 0.92202 0.91187 0.93367 0.90438 0.90014
0.91016 0.96156 0.89575 0.90054 0.95583 0.86534 0.84210 0.83765
0.84071 0.85758 0.93877 0.94099
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.34 13.26 21.45 0.28 -54.06 16
2 C 0.01 0.83 5.46 84.65 0.46 1.30 16
3 Si 0.96 43.48 29.54 68.60 2.03 45.51 16
4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16
5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
7 C -0.53 -29.26 8.82 25.60 0.23 -29.03 16
8 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16
9 C 0.02 1.20 3.77 -11.20 -0.04 1.16 16
10 C 0.01 0.44 7.27 83.57 0.61 1.05 16
11 N -0.47 -18.95 5.83 -927.91 -5.41 -24.36 16
12 C 0.03 1.08 3.97 86.30 0.34 1.43 16
13 C 0.10 3.11 1.91 44.94 0.09 3.20 16
14 H 0.02 0.57 7.45 -2.39 -0.02 0.56 16
15 C -0.10 -2.72 5.24 30.65 0.16 -2.56 16
16 C -0.12 -2.82 6.00 30.67 0.18 -2.64 16
17 C -0.11 -2.23 6.09 30.64 0.19 -2.04 16
18 C 0.05 1.26 4.79 86.32 0.41 1.67 16
19 N -0.52 -13.82 4.59 -875.63 -4.02 -17.84 16
20 C 0.09 2.37 4.61 85.56 0.39 2.77 16
21 C -0.09 -2.00 4.38 -19.87 -0.09 -2.08 16
22 C -0.13 -2.59 7.75 22.27 0.17 -2.42 16
23 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16
24 C -0.12 -1.90 10.05 22.27 0.22 -1.67 16
25 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16
26 C -0.11 -2.30 9.70 22.27 0.22 -2.09 16
27 C 0.02 1.04 6.34 83.57 0.53 1.57 16
28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16
29 H 0.03 1.82 8.11 -2.39 -0.02 1.80 16
30 H 0.06 2.39 7.66 -2.39 -0.02 2.38 16
31 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16
32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16
33 H 0.03 1.13 5.64 -2.39 -0.01 1.12 16
34 H 0.06 1.94 7.73 -2.39 -0.02 1.93 16
35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
36 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16
37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16
39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
40 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16
41 H 0.09 1.90 5.61 -2.39 -0.01 1.89 16
42 H 0.08 2.21 6.33 -2.38 -0.02 2.19 16
43 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16
44 H 0.12 2.34 8.05 -2.91 -0.02 2.31 16
45 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16
46 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16
47 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16
48 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16
49 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16
50 H 0.04 1.96 7.72 -2.39 -0.02 1.95 16
Total: -1.00 -60.88 384.78 -1.72 -62.60
By element:
Atomic # 1 Polarization: 21.39 SS G_CDS: 0.88 Total: 22.28 kcal
Atomic # 6 Polarization: -38.64 SS G_CDS: 4.52 Total: -34.12 kcal
Atomic # 7 Polarization: -87.11 SS G_CDS: -9.15 Total: -96.26 kcal
Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal
Total: -60.88 -1.72 -62.60 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001208582645.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.493 kcal
(2) G-P(sol) polarization free energy of solvation -60.881 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.612 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.894 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds