Wall clock time and date at job start Tue Mar 31 2020 10:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00295 * 2 1 4 4 H 1.48500 * 109.47368 * 270.00493 * 3 2 1 5 5 H 1.48503 * 109.47134 * 30.00367 * 3 2 1 6 6 H 1.48493 * 109.47386 * 150.00426 * 3 2 1 7 7 C 1.37872 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00617 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99922 * 179.72106 * 7 2 1 10 10 C 1.53936 * 113.73311 * 278.76256 * 9 7 2 11 11 N 1.48184 * 86.10223 * 221.95754 * 10 9 7 12 12 C 1.46896 * 111.07101 * 137.52361 * 11 10 9 13 13 C 1.52998 * 109.47167 * 90.56516 * 12 11 10 14 14 H 1.09004 * 109.46601 * 56.70705 * 13 12 11 15 15 C 1.53032 * 109.46491 * 296.72454 * 13 12 11 16 16 C 1.53122 * 109.27998 * 180.80205 * 15 13 12 17 17 C 1.53119 * 109.15752 * 57.65802 * 16 15 13 18 18 C 1.53038 * 109.27834 * 302.34218 * 17 16 15 19 19 N 1.46846 * 109.52200 * 59.18108 * 18 17 16 20 20 C 1.46905 * 111.00063 * 174.16031 * 19 18 17 21 21 C 1.50698 * 109.47245 * 297.47611 * 20 19 18 22 22 C 1.38231 * 120.00240 * 269.72925 * 21 20 19 23 23 C 1.38234 * 120.00056 * 179.76436 * 22 21 20 24 24 C 1.38236 * 119.99863 * 0.48084 * 23 22 21 25 25 C 1.38230 * 119.99959 * 359.79286 * 24 23 22 26 26 C 1.38232 * 120.00525 * 359.95437 * 25 24 23 27 27 C 1.47963 * 90.79941 * 24.59998 * 11 10 9 28 28 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 29 29 H 1.08998 * 112.93871 * 50.33128 * 9 7 2 30 30 H 1.09000 * 113.76143 * 336.23902 * 10 9 7 31 31 H 1.09005 * 113.75412 * 107.60363 * 10 9 7 32 32 H 1.09001 * 109.46957 * 210.56552 * 12 11 10 33 33 H 1.08999 * 109.47408 * 330.56473 * 12 11 10 34 34 H 1.08996 * 109.50536 * 300.75090 * 15 13 12 35 35 H 1.09001 * 109.50407 * 60.86598 * 15 13 12 36 36 H 1.08997 * 109.51841 * 177.55678 * 16 15 13 37 37 H 1.08992 * 109.52203 * 297.68958 * 16 15 13 38 38 H 1.09003 * 109.50455 * 62.28287 * 17 16 15 39 39 H 1.08995 * 109.50348 * 182.40128 * 17 16 15 40 40 H 1.08998 * 109.46369 * 179.19620 * 18 17 16 41 41 H 1.08997 * 109.46434 * 299.16469 * 18 17 16 42 42 H 1.08993 * 109.46998 * 57.47844 * 20 19 18 43 43 H 1.08994 * 109.46857 * 177.47803 * 20 19 18 44 44 H 1.08002 * 120.00039 * 359.97438 * 22 21 20 45 45 H 1.08005 * 120.00190 * 180.25024 * 23 22 21 46 46 H 1.08009 * 119.99861 * 179.76617 * 24 23 22 47 47 H 1.08001 * 120.00202 * 179.97438 * 25 24 23 48 48 H 1.07990 * 120.00624 * 180.02562 * 26 25 24 49 49 H 1.09002 * 113.75646 * 221.08265 * 27 11 10 50 50 H 1.08997 * 113.75807 * 89.72302 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0069 10 6 4.1252 -0.9823 -1.4026 11 7 5.0926 -2.0400 -1.0267 12 6 5.3183 -2.9696 -2.1415 13 6 6.4912 -2.4738 -2.9896 14 1 7.3744 -2.3652 -2.3600 15 6 6.1365 -1.1198 -3.6084 16 6 7.3050 -0.6371 -4.4722 17 6 7.6040 -1.6874 -5.5456 18 6 7.9162 -3.0249 -4.8706 19 7 6.7678 -3.4438 -4.0569 20 6 6.9766 -4.7889 -3.5045 21 6 7.0926 -5.7824 -4.6317 22 6 5.9622 -6.4140 -5.1155 23 6 6.0680 -7.3216 -6.1527 24 6 7.3055 -7.6051 -6.6995 25 6 8.4367 -6.9777 -6.2120 26 6 8.3303 -6.0662 -5.1783 27 6 4.1307 -2.6027 -0.0533 28 1 -0.4850 0.8401 0.0004 29 1 3.9396 -0.5519 0.7627 30 1 3.4626 -1.2639 -2.2211 31 1 4.5776 0.0000 -1.5389 32 1 5.5476 -3.9599 -1.7479 33 1 4.4209 -3.0225 -2.7579 34 1 5.2454 -1.2248 -4.2273 35 1 5.9465 -0.3960 -2.8159 36 1 7.0397 0.3062 -4.9495 37 1 8.1857 -0.4936 -3.8463 38 1 6.7360 -1.8013 -6.1950 39 1 8.4624 -1.3691 -6.1370 40 1 8.1155 -3.7784 -5.6325 41 1 8.7925 -2.9137 -4.2320 42 1 7.8926 -4.8010 -2.9139 43 1 6.1317 -5.0563 -2.8701 44 1 4.9959 -6.1958 -4.6853 45 1 5.1842 -7.8121 -6.5334 46 1 7.3887 -8.3171 -7.5074 47 1 9.4036 -7.1995 -6.6389 48 1 9.2139 -5.5758 -4.7977 49 1 4.5877 -2.9128 0.8864 50 1 3.4699 -3.3593 -0.4762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208582646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:03 Heat of formation + Delta-G solvation = 43.533716 kcal Electronic energy + Delta-G solvation = -26681.814254 eV Core-core repulsion = 23287.645532 eV Total energy + Delta-G solvation = -3394.168721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26273 -40.30662 -39.19128 -35.08909 -34.85677 -33.47264 -31.81451 -31.63092 -30.38060 -27.69430 -27.21714 -26.74511 -24.47159 -23.98681 -23.34275 -22.08452 -21.59685 -20.79930 -20.18571 -19.05483 -17.65720 -17.34444 -16.93714 -16.42420 -16.25342 -16.16770 -15.69304 -15.51575 -15.24950 -14.96925 -14.81770 -14.43933 -14.36059 -14.23852 -14.07134 -13.79797 -13.54102 -13.35325 -13.29243 -12.99949 -12.80229 -12.77241 -12.31179 -12.08352 -12.01660 -11.88343 -11.83040 -11.63611 -11.54607 -11.40121 -11.09504 -11.07093 -11.01187 -10.67214 -9.77403 -9.70290 -9.64543 -9.22172 -8.29324 -6.34217 0.44173 0.53441 1.37202 1.38793 1.50080 2.36605 2.65256 3.01711 3.04367 3.36327 3.71863 3.76106 3.89637 3.96411 4.01036 4.11684 4.14389 4.18759 4.27936 4.30631 4.35132 4.38434 4.42068 4.50421 4.60360 4.62801 4.67964 4.70467 4.75031 4.79165 4.84404 4.85179 4.91704 4.93510 4.96795 5.03782 5.09292 5.14361 5.19039 5.24290 5.31461 5.44884 5.48203 5.51008 5.59041 5.65405 5.65794 5.74164 6.04778 6.15264 6.18883 6.27817 6.31156 6.71380 7.32069 8.86997 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.003181 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.305708 B = 8801.058428 C = 9620.244258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.514 4.514 8 H 0.032 0.968 9 C -0.020 4.020 10 C 0.009 3.991 11 N -0.477 5.477 12 C 0.029 3.971 13 C 0.109 3.891 14 H 0.042 0.958 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.112 4.112 18 C 0.057 3.943 19 N -0.536 5.536 20 C 0.090 3.910 21 C -0.084 4.084 22 C -0.117 4.117 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.121 4.121 27 C 0.021 3.979 28 H 0.266 0.734 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.134 0.866 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.129 0.871 49 H 0.088 0.912 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.386 -10.496 -14.133 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.552 4.552 8 H 0.050 0.950 9 C -0.039 4.039 10 C -0.120 4.120 11 N -0.199 5.199 12 C -0.100 4.100 13 C 0.001 3.999 14 H 0.060 0.940 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.071 4.071 19 N -0.261 5.261 20 C -0.037 4.037 21 C -0.085 4.085 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.107 4.107 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.160 0.840 48 H 0.147 0.853 49 H 0.107 0.893 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 21.504 -10.236 -14.231 27.744 hybrid contribution -0.767 0.418 0.367 0.947 sum 20.737 -9.818 -13.864 26.808 Atomic orbital electron populations 1.70063 1.08318 1.28129 1.52475 1.25878 0.95359 1.03151 0.93823 0.85813 0.79759 0.78596 0.79473 1.18894 1.21441 1.16610 1.21213 0.90940 0.92929 1.50134 0.94950 1.20897 0.93527 0.95182 0.94337 1.24213 0.92696 0.96132 0.98934 1.68346 1.33226 1.08321 1.10024 1.22710 0.97765 0.96641 0.92916 1.21299 0.96229 0.91991 0.90393 0.93958 1.21682 0.98686 0.95621 0.99140 1.21565 0.97748 0.98744 0.97366 1.21565 1.02027 0.93772 0.97585 1.22180 0.90532 0.97637 0.96736 1.61894 1.40512 1.01050 1.22649 1.21106 1.01068 0.87408 0.94137 1.19781 0.93877 0.97119 0.97708 1.21171 0.98202 0.96866 0.97357 1.21403 0.98751 0.98124 0.96502 1.21459 0.92440 1.00209 1.00384 1.21413 0.99622 0.96537 0.96718 1.21226 0.96839 0.98615 0.97258 1.23756 0.92902 0.97101 0.96976 0.92508 0.92416 0.92963 0.90912 0.90480 0.94822 0.93022 0.91721 0.91314 0.91849 0.92285 0.89778 0.89862 0.94702 0.93636 0.90213 0.86691 0.84850 0.84081 0.83952 0.85345 0.89342 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.02 0.89 5.47 84.65 0.46 1.35 16 3 Si 0.94 43.79 26.97 68.60 1.85 45.64 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.24 -10.50 6.29 99.48 0.63 -9.87 16 7 C -0.51 -29.10 9.33 25.60 0.24 -28.86 16 8 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 9 C -0.02 -0.93 2.90 -10.89 -0.03 -0.96 16 10 C 0.01 0.38 4.92 86.37 0.42 0.81 16 11 N -0.48 -17.15 6.00 -907.33 -5.45 -22.60 16 12 C 0.03 0.90 4.13 86.30 0.36 1.25 16 13 C 0.11 2.97 2.13 44.94 0.10 3.06 16 14 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 15 C -0.11 -3.13 4.60 30.65 0.14 -2.99 16 16 C -0.12 -2.53 6.00 30.67 0.18 -2.35 16 17 C -0.11 -2.17 6.09 30.65 0.19 -1.98 16 18 C 0.06 1.14 5.08 86.33 0.44 1.58 16 19 N -0.54 -12.86 4.51 -875.67 -3.95 -16.81 16 20 C 0.09 1.99 4.79 85.56 0.41 2.40 16 21 C -0.08 -1.75 4.79 -19.87 -0.10 -1.85 16 22 C -0.12 -2.50 9.70 22.27 0.22 -2.29 16 23 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 26 C -0.12 -2.10 7.79 22.27 0.17 -1.92 16 27 C 0.02 0.84 7.50 86.41 0.65 1.49 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.06 2.67 6.69 -2.39 -0.02 2.66 16 30 H 0.05 2.29 7.44 -2.39 -0.02 2.27 16 31 H 0.07 2.83 6.90 -2.38 -0.02 2.82 16 32 H 0.08 2.24 5.93 -2.39 -0.01 2.23 16 33 H 0.03 1.18 7.39 -2.39 -0.02 1.16 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.96 5.70 -2.39 -0.01 1.95 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.60 5.70 -2.39 -0.01 1.58 16 41 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 43 H 0.08 1.89 5.69 -2.39 -0.01 1.88 16 44 H 0.11 2.53 8.06 -2.91 -0.02 2.51 16 45 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 47 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 48 H 0.13 1.86 8.00 -2.92 -0.02 1.84 16 49 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 50 H 0.05 2.17 7.87 -2.39 -0.02 2.15 16 Total: -1.00 -63.94 376.42 -1.91 -65.85 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.81 Total: 23.58 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 4.52 Total: -36.74 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -9.10 Total: -98.33 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.85 Total: 45.64 kcal Total: -63.94 -1.91 -65.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208582646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.388 kcal (2) G-P(sol) polarization free energy of solvation -63.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds