Wall clock time and date at job start Tue Mar 31 2020 10:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42890 * 113.99987 * 2 1 4 4 C 1.53009 * 109.47227 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47179 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.46870 * 179.97438 * 5 4 3 7 7 C 1.42907 * 113.99626 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46775 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47206 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99639 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00202 * 180.02562 * 9 8 7 12 12 C 1.46931 * 120.63145 * 359.97034 * 11 9 8 13 13 C 1.53191 * 108.76527 * 126.40558 * 12 11 9 14 14 C 1.53046 * 109.30997 * 54.65907 * 13 12 11 15 15 C 1.53039 * 109.52798 * 298.61471 * 14 13 12 16 16 H 1.09000 * 109.49863 * 301.42271 * 15 14 13 17 17 N 1.46490 * 109.50100 * 181.32318 * 15 14 13 18 18 C 1.36939 * 120.00582 * 154.99895 * 17 15 14 19 19 H 1.08000 * 119.99214 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00569 * 180.02562 * 18 17 15 21 21 N 1.31626 * 119.99638 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47292 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46807 * 120.00004 * 22 20 18 25 25 H 1.48495 * 109.47361 * 239.99644 * 22 20 18 26 26 C 1.46919 * 120.63242 * 179.97438 * 11 9 8 27 27 H 1.09004 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46885 * 299.99709 * 1 2 3 29 29 H 1.09000 * 109.47499 * 59.99958 * 1 2 3 30 30 H 1.09002 * 109.47415 * 60.00627 * 3 2 1 31 31 H 1.09000 * 109.47326 * 300.00069 * 3 2 1 32 32 H 1.09002 * 109.46612 * 59.99890 * 4 3 2 33 33 H 1.09000 * 109.46823 * 300.00130 * 4 3 2 34 34 H 1.09002 * 109.47340 * 60.00456 * 5 4 3 35 35 H 1.08996 * 109.47375 * 300.00365 * 5 4 3 36 36 H 1.09000 * 109.47204 * 60.00649 * 7 6 5 37 37 H 1.08992 * 109.47417 * 299.99920 * 7 6 5 38 38 H 1.08997 * 109.47595 * 59.99997 * 8 7 6 39 39 H 1.09004 * 109.46974 * 300.00118 * 8 7 6 40 40 H 1.08998 * 109.58959 * 246.20295 * 12 11 9 41 41 H 1.09003 * 109.58181 * 6.48778 * 12 11 9 42 42 H 1.08998 * 109.50939 * 294.70294 * 13 12 11 43 43 H 1.09003 * 109.48831 * 174.59930 * 13 12 11 44 44 H 1.09002 * 109.46115 * 178.59924 * 14 13 12 45 45 H 1.09004 * 109.45806 * 58.62809 * 14 13 12 46 46 H 0.97006 * 119.99920 * 334.99944 * 17 15 14 47 47 H 0.96998 * 119.99357 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.59005 * 113.79701 * 26 11 9 49 49 H 1.09002 * 109.70256 * 353.43937 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 8 5.5823 2.4694 -0.0013 7 6 6.2648 3.7250 -0.0013 8 6 7.7757 3.4841 -0.0019 9 6 8.4955 4.8081 -0.0013 10 8 7.8623 5.8425 -0.0009 11 7 9.8428 4.8427 -0.0022 12 6 10.6236 3.5980 -0.0032 13 6 11.6139 3.6385 -1.1713 14 6 12.4594 4.9105 -1.0742 15 6 11.5501 6.1377 -1.1695 16 1 11.0025 6.1125 -2.1117 17 7 12.3631 7.3547 -1.1082 18 6 11.8998 8.5166 -1.6656 19 1 10.9348 8.5357 -2.1501 20 6 12.6705 9.6696 -1.6080 21 7 13.8464 9.6464 -1.0171 22 14 12.0387 11.2543 -2.3690 23 1 10.7001 11.0172 -2.9666 24 1 11.9337 12.2998 -1.3196 25 1 12.9799 11.7059 -3.4251 26 6 10.5587 6.1256 -0.0022 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8909 33 1 3.8574 0.6435 0.8891 34 1 3.8366 3.1234 0.8887 35 1 3.8357 3.1230 -0.8912 36 1 5.9869 4.2895 0.8887 37 1 5.9869 4.2896 -0.8912 38 1 8.0533 2.9196 -0.8921 39 1 8.0539 2.9192 0.8878 40 1 11.1695 3.5083 0.9360 41 1 9.9533 2.7463 -0.1191 42 1 11.0658 3.6370 -2.1134 43 1 12.2645 2.7650 -1.1269 44 1 13.1819 4.9295 -1.8902 45 1 12.9879 4.9233 -0.1209 46 1 13.2298 7.3376 -0.6727 47 1 14.3850 10.4521 -0.9772 48 1 11.0993 6.2425 0.9370 49 1 9.8474 6.9434 -0.1186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210561420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:10 Heat of formation + Delta-G solvation = -128.275472 kcal Electronic energy + Delta-G solvation = -25899.531810 eV Core-core repulsion = 22054.770869 eV Total energy + Delta-G solvation = -3844.760941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04084 -38.68997 -38.02201 -37.25530 -34.50289 -33.50156 -32.35974 -31.47594 -30.96135 -28.28043 -27.45572 -25.67058 -24.92539 -24.05393 -23.08985 -21.97919 -21.89423 -20.11562 -18.69090 -17.57091 -17.10048 -16.99200 -16.87753 -16.25077 -16.08744 -15.63518 -15.32494 -15.05101 -14.77833 -14.31400 -14.25663 -14.11124 -13.79409 -13.46683 -13.24149 -13.09511 -12.63182 -12.41158 -12.35081 -12.27993 -11.96464 -11.85719 -11.64955 -11.37881 -11.24328 -11.21035 -11.01298 -10.85966 -10.65511 -10.58612 -10.17961 -10.14754 -9.83680 -9.82636 -9.78068 -9.55852 -9.08369 -8.35514 -7.00522 -5.79554 -3.09309 2.77323 2.81247 3.24931 3.43816 3.50234 3.52556 3.81177 4.49191 4.57444 4.60292 4.66415 4.74746 4.84734 4.85585 4.89041 4.91475 4.95850 5.00348 5.09049 5.10677 5.17731 5.23570 5.27395 5.33656 5.48156 5.55514 5.57011 5.64188 5.66958 5.71970 5.76963 5.79351 5.91914 6.03609 6.16226 6.20994 6.34504 6.48509 6.66238 6.72360 6.82450 6.93009 7.00193 7.64247 7.71589 8.34647 8.39360 9.50599 10.04630 10.39854 11.42776 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.020810 B = 0.001990 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.174524 B =14066.804170 C =15126.799846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.119 4.119 5 C 0.068 3.932 6 O -0.390 6.390 7 C 0.079 3.921 8 C -0.138 4.138 9 C 0.513 3.487 10 O -0.545 6.545 11 N -0.605 5.605 12 C 0.105 3.895 13 C -0.130 4.130 14 C -0.126 4.126 15 C 0.168 3.832 16 H 0.050 0.950 17 N -0.718 5.718 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.092 3.908 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.061 0.939 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.899 -21.123 3.242 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.156 4.156 5 C -0.009 4.009 6 O -0.310 6.310 7 C 0.002 3.998 8 C -0.178 4.178 9 C 0.301 3.699 10 O -0.423 6.423 11 N -0.339 5.339 12 C -0.018 4.018 13 C -0.169 4.169 14 C -0.165 4.165 15 C 0.057 3.943 16 H 0.068 0.932 17 N -0.359 5.359 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.033 4.033 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.093 -20.740 3.143 28.365 hybrid contribution -0.254 1.401 -0.174 1.435 sum -19.346 -19.339 2.969 27.515 Atomic orbital electron populations 1.22761 0.80732 1.02915 1.00101 1.87865 1.19918 1.27819 1.95456 1.22379 0.93531 0.84858 1.00534 1.21367 0.92593 0.96894 1.04764 1.22261 0.81263 0.96717 1.00652 1.87771 1.17738 1.29855 1.95619 1.22149 0.90897 0.84868 1.01908 1.21496 0.94422 0.96558 1.05287 1.20318 0.82382 0.90669 0.76548 1.90715 1.65918 1.35361 1.50334 1.48272 1.05048 1.08284 1.72254 1.21776 0.94513 0.86228 0.99272 1.21884 0.97913 0.98710 0.98389 1.21829 0.98360 0.93990 1.02297 1.20485 0.91361 0.86910 0.95551 0.93159 1.42383 1.19993 1.05346 1.68175 1.19323 1.01531 0.87428 1.29030 0.90995 1.24747 0.96690 0.98062 1.01205 1.69676 1.11648 1.28099 1.48583 0.86116 0.77933 0.83723 0.78454 1.20444 1.21800 1.21835 1.22775 0.95922 0.83891 1.00671 0.89481 0.93973 0.93950 0.93008 0.92991 0.90140 0.90164 0.93043 0.92992 0.92323 0.92251 0.88147 0.88277 0.91330 0.90066 0.91559 0.90936 0.91392 0.92025 0.78067 0.93518 0.92078 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.34 10.70 -35.23 -0.38 -3.71 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 C -0.12 -0.92 5.95 -26.73 -0.16 -1.08 16 5 C 0.07 0.57 5.94 37.16 0.22 0.79 16 6 O -0.39 -4.21 10.34 -35.23 -0.36 -4.57 16 7 C 0.08 0.89 5.23 37.16 0.19 1.09 16 8 C -0.14 -1.51 4.42 -27.88 -0.12 -1.64 16 9 C 0.51 7.88 7.70 -10.99 -0.08 7.80 16 10 O -0.55 -10.64 15.40 5.55 0.09 -10.55 16 11 N -0.61 -9.10 2.97 -172.79 -0.51 -9.61 16 12 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 13 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 14 C -0.13 -1.95 5.35 -26.69 -0.14 -2.10 16 15 C 0.17 3.32 2.92 -67.84 -0.20 3.12 16 16 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 17 N -0.72 -17.83 5.12 -53.34 -0.27 -18.11 16 18 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 19 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 22 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.09 1.73 6.01 -3.73 -0.02 1.71 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.10 0.96 7.69 -51.93 -0.40 0.56 16 39 H 0.10 0.92 7.94 -51.93 -0.41 0.50 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.39 10.05 7.80 -40.82 -0.32 9.73 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.09 2.01 7.01 -51.93 -0.36 1.64 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -33.40 395.72 -8.14 -41.54 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.95 Total: 4.89 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 0.59 Total: 3.78 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.06 Total: -55.02 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.66 Total: -18.84 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.40 -8.14 -41.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210561420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.732 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds