Wall clock time and date at job start Tue Mar 31 2020 10:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42890 * 113.99987 * 2 1 4 4 C 1.53009 * 109.47227 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47179 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.46870 * 179.97438 * 5 4 3 7 7 C 1.42907 * 113.99626 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46775 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47206 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99639 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00202 * 180.02562 * 9 8 7 12 12 C 1.46931 * 120.63145 * 359.97034 * 11 9 8 13 13 C 1.53191 * 108.76527 * 126.40558 * 12 11 9 14 14 C 1.53046 * 109.30997 * 54.65907 * 13 12 11 15 15 C 1.53039 * 109.52798 * 298.61471 * 14 13 12 16 16 H 1.09000 * 109.49863 * 301.42271 * 15 14 13 17 17 N 1.46490 * 109.50100 * 181.32318 * 15 14 13 18 18 C 1.36939 * 120.00582 * 154.99895 * 17 15 14 19 19 H 1.08000 * 119.99214 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00569 * 180.02562 * 18 17 15 21 21 N 1.31626 * 119.99638 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47292 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46807 * 120.00004 * 22 20 18 25 25 H 1.48495 * 109.47361 * 239.99644 * 22 20 18 26 26 C 1.46919 * 120.63242 * 179.97438 * 11 9 8 27 27 H 1.09004 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46885 * 299.99709 * 1 2 3 29 29 H 1.09000 * 109.47499 * 59.99958 * 1 2 3 30 30 H 1.09002 * 109.47415 * 60.00627 * 3 2 1 31 31 H 1.09000 * 109.47326 * 300.00069 * 3 2 1 32 32 H 1.09002 * 109.46612 * 59.99890 * 4 3 2 33 33 H 1.09000 * 109.46823 * 300.00130 * 4 3 2 34 34 H 1.09002 * 109.47340 * 60.00456 * 5 4 3 35 35 H 1.08996 * 109.47375 * 300.00365 * 5 4 3 36 36 H 1.09000 * 109.47204 * 60.00649 * 7 6 5 37 37 H 1.08992 * 109.47417 * 299.99920 * 7 6 5 38 38 H 1.08997 * 109.47595 * 59.99997 * 8 7 6 39 39 H 1.09004 * 109.46974 * 300.00118 * 8 7 6 40 40 H 1.08998 * 109.58959 * 246.20295 * 12 11 9 41 41 H 1.09003 * 109.58181 * 6.48778 * 12 11 9 42 42 H 1.08998 * 109.50939 * 294.70294 * 13 12 11 43 43 H 1.09003 * 109.48831 * 174.59930 * 13 12 11 44 44 H 1.09002 * 109.46115 * 178.59924 * 14 13 12 45 45 H 1.09004 * 109.45806 * 58.62809 * 14 13 12 46 46 H 0.97006 * 119.99920 * 334.99944 * 17 15 14 47 47 H 0.96998 * 119.99357 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.59005 * 113.79701 * 26 11 9 49 49 H 1.09002 * 109.70256 * 353.43937 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 8 5.5823 2.4694 -0.0013 7 6 6.2648 3.7250 -0.0013 8 6 7.7757 3.4841 -0.0019 9 6 8.4955 4.8081 -0.0013 10 8 7.8623 5.8425 -0.0009 11 7 9.8428 4.8427 -0.0022 12 6 10.6236 3.5980 -0.0032 13 6 11.6139 3.6385 -1.1713 14 6 12.4594 4.9105 -1.0742 15 6 11.5501 6.1377 -1.1695 16 1 11.0025 6.1125 -2.1117 17 7 12.3631 7.3547 -1.1082 18 6 11.8998 8.5166 -1.6656 19 1 10.9348 8.5357 -2.1501 20 6 12.6705 9.6696 -1.6080 21 7 13.8464 9.6464 -1.0171 22 14 12.0387 11.2543 -2.3690 23 1 10.7001 11.0172 -2.9666 24 1 11.9337 12.2998 -1.3196 25 1 12.9799 11.7059 -3.4251 26 6 10.5587 6.1256 -0.0022 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8909 33 1 3.8574 0.6435 0.8891 34 1 3.8366 3.1234 0.8887 35 1 3.8357 3.1230 -0.8912 36 1 5.9869 4.2895 0.8887 37 1 5.9869 4.2896 -0.8912 38 1 8.0533 2.9196 -0.8921 39 1 8.0539 2.9192 0.8878 40 1 11.1695 3.5083 0.9360 41 1 9.9533 2.7463 -0.1191 42 1 11.0658 3.6370 -2.1134 43 1 12.2645 2.7650 -1.1269 44 1 13.1819 4.9295 -1.8902 45 1 12.9879 4.9233 -0.1209 46 1 13.2298 7.3376 -0.6727 47 1 14.3850 10.4521 -0.9772 48 1 11.0993 6.2425 0.9370 49 1 9.8474 6.9434 -0.1186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210561420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:10 Heat of formation + Delta-G solvation = -151.725129 kcal Electronic energy + Delta-G solvation = -25900.548664 eV Core-core repulsion = 22054.770869 eV Total energy + Delta-G solvation = -3845.777794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26966 -39.39941 -38.84563 -38.43806 -36.22334 -34.28790 -33.87767 -32.74572 -32.18991 -29.91453 -27.98111 -26.75671 -25.88734 -25.63218 -24.16888 -23.23384 -22.60470 -21.53676 -19.89779 -19.12851 -18.55255 -17.68925 -17.61911 -17.05310 -16.94689 -16.70399 -16.67727 -16.19367 -15.71587 -15.55361 -15.45785 -15.31503 -15.07870 -14.80412 -14.59360 -14.02399 -13.97592 -13.65175 -13.48738 -13.15000 -12.93230 -12.83398 -12.62540 -12.60953 -12.50697 -12.28447 -12.17668 -11.99557 -11.93112 -11.90054 -11.88058 -11.64920 -11.33899 -11.13448 -10.85014 -10.64956 -10.62616 -9.74303 -9.02375 -8.00328 -5.29436 1.42824 1.44080 1.54071 1.59147 1.83994 2.42768 2.52840 3.11286 3.33061 3.61845 3.76328 3.91933 3.96117 4.02227 4.06230 4.09703 4.11516 4.22996 4.30697 4.35977 4.39456 4.40147 4.45086 4.48719 4.54468 4.55363 4.60579 4.66508 4.74550 4.78590 4.82972 4.86185 4.90114 4.93819 5.06774 5.09222 5.13152 5.16483 5.39255 5.43215 5.47901 5.58363 6.11553 6.21804 6.22787 6.46573 7.15091 7.29245 8.01885 8.26792 9.22538 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.020810 B = 0.001990 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.174524 B =14066.804170 C =15126.799846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.063 3.937 4 C -0.112 4.112 5 C 0.063 3.937 6 O -0.396 6.396 7 C 0.082 3.918 8 C -0.124 4.124 9 C 0.507 3.493 10 O -0.597 6.597 11 N -0.605 5.605 12 C 0.100 3.900 13 C -0.122 4.122 14 C -0.119 4.119 15 C 0.166 3.834 16 H 0.031 0.969 17 N -0.730 5.730 18 C -0.245 4.245 19 H 0.065 0.935 20 C -0.068 4.068 21 N -0.964 5.964 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.107 3.893 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.377 0.623 47 H 0.253 0.747 48 H 0.057 0.943 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.790 -23.662 3.290 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.150 4.150 5 C -0.013 4.013 6 O -0.316 6.316 7 C 0.005 3.995 8 C -0.164 4.164 9 C 0.297 3.703 10 O -0.478 6.478 11 N -0.337 5.337 12 C -0.021 4.021 13 C -0.160 4.160 14 C -0.157 4.157 15 C 0.056 3.944 16 H 0.049 0.951 17 N -0.370 5.370 18 C -0.377 4.377 19 H 0.083 0.917 20 C -0.261 4.261 21 N -0.614 5.614 22 Si 0.797 3.203 23 H -0.198 1.198 24 H -0.219 1.219 25 H -0.214 1.214 26 C -0.019 4.019 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.103 0.897 41 H 0.139 0.861 42 H 0.083 0.917 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.210 0.790 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.009 -23.352 3.185 30.917 hybrid contribution -0.049 2.117 -0.182 2.126 sum -20.058 -21.235 3.003 29.364 Atomic orbital electron populations 1.22937 0.79290 1.03896 1.00959 1.87819 1.21622 1.28678 1.95652 1.22416 0.92826 0.84625 1.01489 1.21294 0.93299 0.96239 1.04138 1.22411 0.80175 0.97347 1.01404 1.87744 1.18935 1.29254 1.95650 1.22025 0.91478 0.85048 1.00982 1.21452 0.93360 0.93837 1.07704 1.21153 0.82241 0.91775 0.75134 1.90695 1.66972 1.37630 1.52543 1.48319 1.05385 1.08172 1.71841 1.22165 0.94938 0.85193 0.99842 1.21881 0.97936 0.97581 0.98627 1.21750 0.97931 0.93798 1.02254 1.20662 0.91808 0.87073 0.94810 0.95064 1.42526 1.20243 1.06229 1.68018 1.19559 1.01044 0.88820 1.28248 0.91687 1.25481 0.97150 1.01010 1.02423 1.69801 1.12722 1.28639 1.50210 0.85156 0.77587 0.79974 0.77552 1.19801 1.21866 1.21429 1.22176 0.94772 0.85135 0.99820 0.88559 0.93073 0.93113 0.91991 0.92086 0.90806 0.90704 0.92218 0.92356 0.93210 0.93495 0.85692 0.85446 0.89694 0.86071 0.91684 0.87099 0.92169 0.91552 0.79026 0.93831 0.92473 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.62 10.70 -148.98 -1.59 -8.22 16 3 C 0.06 0.78 5.94 71.99 0.43 1.21 16 4 C -0.11 -1.59 5.95 30.60 0.18 -1.41 16 5 C 0.06 0.97 5.94 71.98 0.43 1.39 16 6 O -0.40 -7.73 10.34 -148.98 -1.54 -9.27 16 7 C 0.08 1.74 5.23 71.98 0.38 2.12 16 8 C -0.12 -2.36 4.42 29.85 0.13 -2.23 16 9 C 0.51 15.05 7.70 87.66 0.67 15.73 16 10 O -0.60 -23.88 15.40 -3.04 -0.05 -23.93 16 11 N -0.60 -17.34 2.97 -818.98 -2.43 -19.78 16 12 C 0.10 1.79 6.34 86.36 0.55 2.34 16 13 C -0.12 -2.37 6.08 30.67 0.19 -2.19 16 14 C -0.12 -3.52 5.35 30.62 0.16 -3.36 16 15 C 0.17 6.67 2.92 45.06 0.13 6.80 16 16 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 17 N -0.73 -37.36 5.12 -322.65 -1.65 -39.01 16 18 C -0.24 -14.10 9.93 84.03 0.83 -13.26 16 19 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.96 -59.19 13.06 21.65 0.28 -58.91 16 22 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 23 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 C 0.11 4.12 6.01 86.35 0.52 4.64 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.13 1.83 7.69 -2.39 -0.02 1.81 16 39 H 0.13 1.77 7.94 -2.38 -0.02 1.75 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.12 1.30 5.93 -2.39 -0.01 1.29 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.38 20.26 7.80 -92.70 -0.72 19.53 16 47 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 48 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.05 2.23 7.01 -2.39 -0.02 2.22 16 Total: -1.00 -75.78 395.72 1.55 -74.23 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.19 Total: 25.48 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.32 Total: 9.76 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -3.80 Total: -117.69 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -3.18 Total: -41.42 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -75.78 1.55 -74.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210561420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.495 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds