Wall clock time and date at job start Tue Mar 31 2020 11:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.52992 * 109.47420 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47414 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47123 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47035 * 305.00202 * 7 6 5 9 9 F 1.39901 * 109.46842 * 65.00316 * 7 6 5 10 10 C 1.50700 * 109.46878 * 185.00171 * 7 6 5 11 11 O 1.21286 * 119.99977 * 316.10678 * 10 7 6 12 12 N 1.34771 * 119.99843 * 136.10998 * 10 7 6 13 13 C 1.46925 * 120.62989 * 185.52417 * 12 10 7 14 14 C 1.53189 * 108.77713 * 233.58646 * 13 12 10 15 15 C 1.53039 * 109.31382 * 305.36647 * 14 13 12 16 16 C 1.53034 * 109.54081 * 61.36222 * 15 14 13 17 17 H 1.09001 * 109.49721 * 58.58252 * 16 15 14 18 18 N 1.46496 * 109.50294 * 178.65564 * 16 15 14 19 19 C 1.36938 * 119.99744 * 275.00090 * 18 16 15 20 20 H 1.08002 * 120.00362 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00014 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99798 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46757 * 89.99705 * 23 21 19 25 25 H 1.48493 * 109.47173 * 209.99798 * 23 21 19 26 26 H 1.48503 * 109.47102 * 330.00242 * 23 21 19 27 27 C 1.46923 * 120.63241 * 5.24458 * 12 10 7 28 28 H 1.08990 * 109.47311 * 299.99669 * 1 2 3 29 29 H 1.09000 * 109.46888 * 60.00471 * 1 2 3 30 30 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47556 * 239.99898 * 2 1 3 32 32 H 1.09000 * 109.46888 * 119.99529 * 2 1 3 33 33 H 1.09001 * 109.47047 * 59.99586 * 3 2 1 34 34 H 1.09005 * 109.47255 * 300.00158 * 3 2 1 35 35 H 1.09001 * 109.47231 * 59.99843 * 4 3 2 36 36 H 1.09007 * 109.47429 * 299.99644 * 4 3 2 37 37 H 1.09001 * 109.47047 * 59.99730 * 5 4 3 38 38 H 1.08996 * 109.47204 * 300.00063 * 5 4 3 39 39 H 1.08996 * 109.47093 * 300.00261 * 6 5 4 40 40 H 1.09000 * 109.46809 * 60.00349 * 6 5 4 41 41 H 1.09003 * 109.59026 * 353.37052 * 13 12 10 42 42 H 1.09003 * 109.58746 * 113.65541 * 13 12 10 43 43 H 1.09005 * 109.50149 * 65.31584 * 14 13 12 44 44 H 1.09003 * 109.49904 * 185.37935 * 14 13 12 45 45 H 1.09000 * 109.46034 * 181.38768 * 15 14 13 46 46 H 1.09006 * 109.45570 * 301.35426 * 15 14 13 47 47 H 0.96998 * 120.00126 * 94.99894 * 18 16 15 48 48 H 0.97005 * 119.99998 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.58748 * 246.19884 * 27 12 10 50 50 H 1.09001 * 109.58434 * 6.63042 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8852 0.0013 7 6 6.1198 4.3278 0.0000 8 1 5.6859 4.8657 -0.8428 9 9 5.7487 4.9546 1.1944 10 6 7.6218 4.3295 -0.1226 11 8 8.2846 3.5532 0.5325 12 7 8.2285 5.1936 -0.9602 13 6 9.6795 5.1275 -1.1819 14 6 10.2826 6.5101 -0.9148 15 6 9.5622 7.5512 -1.7746 16 6 8.0797 7.5898 -1.3968 17 1 7.9801 7.8316 -0.3386 18 7 7.3972 8.6091 -2.1978 19 6 7.4000 9.9160 -1.7891 20 1 7.9056 10.1955 -0.8766 21 6 6.7538 10.8820 -2.5483 22 7 6.7569 12.1383 -2.1558 23 14 5.8799 10.3988 -4.1270 24 1 4.4689 10.0484 -3.8242 25 1 5.9137 11.5372 -5.0798 26 1 6.5622 9.2266 -4.7316 27 6 7.4508 6.2157 -1.6736 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9290 0.8909 37 1 3.7161 3.3995 0.8895 38 1 3.7169 3.3984 -0.8904 39 1 5.9725 2.3721 0.8919 40 1 5.9740 2.3708 -0.8881 41 1 10.1203 4.3990 -0.5014 42 1 9.8786 4.8324 -2.2121 43 1 10.1622 6.7623 0.1388 44 1 11.3428 6.4996 -1.1675 45 1 10.0059 8.5323 -1.6047 46 1 9.6618 7.2849 -2.8269 47 1 6.9435 8.3582 -3.0175 48 1 6.3050 12.8132 -2.6861 49 1 7.4719 6.0101 -2.7438 50 1 6.4206 6.2055 -1.3177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210679011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:19 Heat of formation + Delta-G solvation = -103.212807 kcal Electronic energy + Delta-G solvation = -26798.747404 eV Core-core repulsion = 22967.446051 eV Total energy + Delta-G solvation = -3831.301353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.89185 -40.10995 -37.61997 -36.88329 -34.56595 -34.25829 -32.64878 -31.62352 -30.57052 -28.90808 -27.22848 -25.22243 -23.83284 -23.40501 -21.82272 -21.32559 -21.12654 -20.30640 -19.15839 -17.82865 -17.79006 -16.68044 -16.15620 -15.99364 -15.50206 -14.91025 -14.62349 -14.54212 -14.47460 -14.15737 -13.99277 -13.77805 -13.62120 -13.46747 -13.07197 -12.83883 -12.76434 -12.62950 -12.54930 -12.31332 -11.94579 -11.67818 -11.56887 -11.27624 -11.19379 -11.17028 -11.07847 -10.98531 -10.84846 -10.74792 -10.60767 -10.57727 -10.45236 -10.19914 -9.67407 -9.66740 -9.01707 -8.64116 -7.38902 -5.84270 -3.22146 2.34332 2.78318 3.30419 3.32456 3.39674 4.06116 4.23345 4.44455 4.51123 4.51856 4.60323 4.72742 4.75430 4.93861 4.98731 5.02358 5.08542 5.14635 5.18455 5.22908 5.31666 5.41145 5.41364 5.43823 5.51666 5.54157 5.56750 5.58152 5.64321 5.67687 5.74057 5.75876 5.81552 5.87327 5.94393 5.98065 6.08310 6.09044 6.12249 6.21380 6.27162 6.50372 6.69158 6.84733 7.25311 7.89281 7.95590 8.33392 9.10313 9.82158 10.00165 11.33610 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.003095 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.961676 B = 9043.726320 C =10916.609743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.133 4.133 7 C 0.076 3.924 8 H 0.105 0.895 9 F -0.187 7.187 10 C 0.497 3.503 11 O -0.531 6.531 12 N -0.597 5.597 13 C 0.110 3.890 14 C -0.133 4.133 15 C -0.138 4.138 16 C 0.172 3.828 17 H 0.063 0.937 18 N -0.745 5.745 19 C -0.246 4.246 20 H 0.091 0.909 21 C 0.007 3.993 22 N -0.931 5.931 23 Si 0.884 3.116 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.090 3.910 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.361 0.639 48 H 0.260 0.740 49 H 0.072 0.928 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 -23.071 1.246 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.172 4.172 7 C 0.037 3.963 8 H 0.123 0.877 9 F -0.168 7.168 10 C 0.282 3.718 11 O -0.407 6.407 12 N -0.330 5.330 13 C -0.011 4.011 14 C -0.172 4.172 15 C -0.178 4.178 16 C 0.062 3.938 17 H 0.081 0.919 18 N -0.388 5.388 19 C -0.376 4.376 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.578 5.578 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.033 4.033 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.194 0.806 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.288 -23.222 1.753 23.680 hybrid contribution -0.609 0.076 -1.223 1.369 sum -4.897 -23.146 0.529 23.664 Atomic orbital electron populations 1.21784 0.95979 1.01481 1.01876 1.21541 0.95803 0.97048 1.01923 1.21636 0.95327 0.96681 1.02286 1.21573 0.95405 0.96364 1.02207 1.21620 0.93794 0.97530 1.03042 1.22047 0.96706 0.93571 1.04836 1.21768 0.92236 0.96121 0.86180 0.87702 1.92897 1.91993 1.83846 1.48082 1.20923 0.90352 0.80835 0.79683 1.90686 1.66198 1.40161 1.43688 1.48155 1.08882 1.32009 1.43924 1.21691 0.79174 0.98744 1.01539 1.21924 0.99557 0.94390 1.01291 1.22245 0.97849 0.98879 0.98818 1.20538 0.90597 0.86185 0.96463 0.91933 1.42665 1.64656 1.05059 1.26374 1.19021 1.29419 0.81844 1.07307 0.89107 1.24681 1.00458 0.95202 0.98562 1.69697 1.47983 1.00191 1.39893 0.86566 0.80081 0.77455 0.84478 1.20966 1.21696 1.20310 1.22429 0.95668 0.88446 0.96786 0.92730 0.92750 0.92915 0.92134 0.92104 0.91876 0.91917 0.91952 0.91829 0.91030 0.91484 0.89518 0.89971 0.89241 0.91371 0.91600 0.91045 0.90883 0.92500 0.80602 0.92938 0.90929 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.87 5.21 -26.74 -0.14 -1.01 16 4 C -0.12 -0.89 5.21 -26.74 -0.14 -1.03 16 5 C -0.12 -1.06 5.13 -26.73 -0.14 -1.20 16 6 C -0.13 -1.35 4.68 -26.73 -0.13 -1.48 16 7 C 0.08 0.94 3.19 -27.88 -0.09 0.85 16 8 H 0.11 1.12 5.70 -51.93 -0.30 0.82 16 9 F -0.19 -2.79 16.75 2.25 0.04 -2.75 16 10 C 0.50 7.25 7.04 -10.99 -0.08 7.17 16 11 O -0.53 -9.11 16.00 5.55 0.09 -9.02 16 12 N -0.60 -8.25 2.97 -172.50 -0.51 -8.76 16 13 C 0.11 1.40 6.44 -3.71 -0.02 1.38 16 14 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 15 C -0.14 -2.21 5.46 -26.69 -0.15 -2.35 16 16 C 0.17 3.07 2.93 -67.59 -0.20 2.88 16 17 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 18 N -0.74 -16.30 4.93 -53.09 -0.26 -16.56 16 19 C -0.25 -6.62 10.41 -15.06 -0.16 -6.78 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 23 Si 0.88 21.05 27.74 -169.99 -4.71 16.34 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 27 C 0.09 1.27 5.69 -3.48 -0.02 1.25 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 37 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.36 7.63 5.66 -40.82 -0.23 7.40 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.09 1.17 5.43 -51.93 -0.28 0.89 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -31.40 394.54 -9.14 -40.54 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -9.20 Total: 5.65 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.30 Total: -3.70 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.00 Total: -53.01 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.40 -9.14 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210679011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.670 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds