Wall clock time and date at job start Tue Mar 31 2020 11:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.52992 * 109.47420 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47414 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47123 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47035 * 305.00202 * 7 6 5 9 9 F 1.39901 * 109.46842 * 65.00316 * 7 6 5 10 10 C 1.50700 * 109.46878 * 185.00171 * 7 6 5 11 11 O 1.21286 * 119.99977 * 316.10678 * 10 7 6 12 12 N 1.34771 * 119.99843 * 136.10998 * 10 7 6 13 13 C 1.46925 * 120.62989 * 185.52417 * 12 10 7 14 14 C 1.53189 * 108.77713 * 233.58646 * 13 12 10 15 15 C 1.53039 * 109.31382 * 305.36647 * 14 13 12 16 16 C 1.53034 * 109.54081 * 61.36222 * 15 14 13 17 17 H 1.09001 * 109.49721 * 58.58252 * 16 15 14 18 18 N 1.46496 * 109.50294 * 178.65564 * 16 15 14 19 19 C 1.36938 * 119.99744 * 275.00090 * 18 16 15 20 20 H 1.08002 * 120.00362 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00014 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99798 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46757 * 89.99705 * 23 21 19 25 25 H 1.48493 * 109.47173 * 209.99798 * 23 21 19 26 26 H 1.48503 * 109.47102 * 330.00242 * 23 21 19 27 27 C 1.46923 * 120.63241 * 5.24458 * 12 10 7 28 28 H 1.08990 * 109.47311 * 299.99669 * 1 2 3 29 29 H 1.09000 * 109.46888 * 60.00471 * 1 2 3 30 30 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47556 * 239.99898 * 2 1 3 32 32 H 1.09000 * 109.46888 * 119.99529 * 2 1 3 33 33 H 1.09001 * 109.47047 * 59.99586 * 3 2 1 34 34 H 1.09005 * 109.47255 * 300.00158 * 3 2 1 35 35 H 1.09001 * 109.47231 * 59.99843 * 4 3 2 36 36 H 1.09007 * 109.47429 * 299.99644 * 4 3 2 37 37 H 1.09001 * 109.47047 * 59.99730 * 5 4 3 38 38 H 1.08996 * 109.47204 * 300.00063 * 5 4 3 39 39 H 1.08996 * 109.47093 * 300.00261 * 6 5 4 40 40 H 1.09000 * 109.46809 * 60.00349 * 6 5 4 41 41 H 1.09003 * 109.59026 * 353.37052 * 13 12 10 42 42 H 1.09003 * 109.58746 * 113.65541 * 13 12 10 43 43 H 1.09005 * 109.50149 * 65.31584 * 14 13 12 44 44 H 1.09003 * 109.49904 * 185.37935 * 14 13 12 45 45 H 1.09000 * 109.46034 * 181.38768 * 15 14 13 46 46 H 1.09006 * 109.45570 * 301.35426 * 15 14 13 47 47 H 0.96998 * 120.00126 * 94.99894 * 18 16 15 48 48 H 0.97005 * 119.99998 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.58748 * 246.19884 * 27 12 10 50 50 H 1.09001 * 109.58434 * 6.63042 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8852 0.0013 7 6 6.1198 4.3278 0.0000 8 1 5.6859 4.8657 -0.8428 9 9 5.7487 4.9546 1.1944 10 6 7.6218 4.3295 -0.1226 11 8 8.2846 3.5532 0.5325 12 7 8.2285 5.1936 -0.9602 13 6 9.6795 5.1275 -1.1819 14 6 10.2826 6.5101 -0.9148 15 6 9.5622 7.5512 -1.7746 16 6 8.0797 7.5898 -1.3968 17 1 7.9801 7.8316 -0.3386 18 7 7.3972 8.6091 -2.1978 19 6 7.4000 9.9160 -1.7891 20 1 7.9056 10.1955 -0.8766 21 6 6.7538 10.8820 -2.5483 22 7 6.7569 12.1383 -2.1558 23 14 5.8799 10.3988 -4.1270 24 1 4.4689 10.0484 -3.8242 25 1 5.9137 11.5372 -5.0798 26 1 6.5622 9.2266 -4.7316 27 6 7.4508 6.2157 -1.6736 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9290 0.8909 37 1 3.7161 3.3995 0.8895 38 1 3.7169 3.3984 -0.8904 39 1 5.9725 2.3721 0.8919 40 1 5.9740 2.3708 -0.8881 41 1 10.1203 4.3990 -0.5014 42 1 9.8786 4.8324 -2.2121 43 1 10.1622 6.7623 0.1388 44 1 11.3428 6.4996 -1.1675 45 1 10.0059 8.5323 -1.6047 46 1 9.6618 7.2849 -2.8269 47 1 6.9435 8.3582 -3.0175 48 1 6.3050 12.8132 -2.6861 49 1 7.4719 6.0101 -2.7438 50 1 6.4206 6.2055 -1.3177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210679011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:18 Heat of formation + Delta-G solvation = -120.666294 kcal Electronic energy + Delta-G solvation = -26799.504244 eV Core-core repulsion = 22967.446051 eV Total energy + Delta-G solvation = -3832.058193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.98313 -41.27818 -38.91497 -37.52434 -36.21262 -34.97426 -33.97998 -33.35124 -31.37255 -30.45413 -28.07479 -26.26740 -25.53842 -24.35403 -23.02267 -21.98896 -21.90919 -21.54692 -20.46458 -19.57951 -18.90717 -17.74554 -17.16853 -16.88002 -16.67644 -16.38793 -15.97861 -15.63792 -15.39065 -15.32536 -15.16662 -14.90366 -14.72771 -14.58133 -14.19152 -14.03202 -13.89313 -13.81775 -13.40211 -13.25268 -13.08867 -12.91421 -12.61021 -12.54325 -12.32978 -12.28380 -11.99865 -11.94713 -11.84762 -11.79606 -11.78947 -11.70281 -11.58277 -11.35990 -11.32560 -10.99452 -10.73210 -9.83518 -9.32063 -8.00451 -5.36409 1.19700 1.41165 1.46445 1.53457 1.71117 2.51444 2.98821 3.30020 3.39706 3.52744 3.59296 3.77258 3.84407 3.95182 4.00377 4.03491 4.08441 4.18121 4.21279 4.31362 4.32587 4.43456 4.49431 4.58883 4.64016 4.64566 4.75635 4.79585 4.85026 4.89808 4.93626 4.96392 4.97609 5.05116 5.10248 5.15634 5.24671 5.27503 5.32450 5.38197 5.40296 5.47545 5.49857 5.54737 5.77196 6.12260 6.21666 6.82263 7.08492 7.80081 8.02472 9.20931 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.003095 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.961676 B = 9043.726320 C =10916.609743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.126 4.126 7 C 0.071 3.929 8 H 0.128 0.872 9 F -0.205 7.205 10 C 0.494 3.506 11 O -0.560 6.560 12 N -0.595 5.595 13 C 0.110 3.890 14 C -0.124 4.124 15 C -0.130 4.130 16 C 0.166 3.834 17 H 0.032 0.968 18 N -0.744 5.744 19 C -0.230 4.230 20 H 0.049 0.951 21 C -0.066 4.066 22 N -0.986 5.986 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.302 1.302 26 H -0.241 1.241 27 C 0.100 3.900 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.073 0.927 47 H 0.371 0.629 48 H 0.258 0.742 49 H 0.102 0.898 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 -25.775 -1.112 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.164 4.164 7 C 0.032 3.968 8 H 0.145 0.855 9 F -0.186 7.186 10 C 0.280 3.720 11 O -0.439 6.439 12 N -0.327 5.327 13 C -0.012 4.012 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.057 3.943 17 H 0.050 0.950 18 N -0.388 5.388 19 C -0.361 4.361 20 H 0.067 0.933 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.785 3.215 24 H -0.201 1.201 25 H -0.229 1.229 26 H -0.165 1.165 27 C -0.023 4.023 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.205 0.795 48 H 0.066 0.934 49 H 0.120 0.880 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.838 -25.991 -0.600 26.445 hybrid contribution -0.333 0.934 -0.359 1.055 sum -5.171 -25.057 -0.960 25.603 Atomic orbital electron populations 1.21793 0.95749 1.01851 1.01815 1.21539 0.96028 0.96645 1.02086 1.21620 0.95035 0.97062 1.02099 1.21542 0.95608 0.95591 1.02459 1.21598 0.92687 0.98311 1.03005 1.22024 0.97554 0.91981 1.04888 1.22037 0.90914 0.97745 0.86057 0.85456 1.92863 1.92011 1.84327 1.49373 1.21311 0.91225 0.80424 0.79033 1.90674 1.67070 1.41451 1.44668 1.48210 1.09444 1.31474 1.43588 1.21808 0.78384 0.97823 1.03146 1.21848 1.00862 0.93958 0.99568 1.22087 0.96357 0.98287 1.00294 1.20687 0.91883 0.87429 0.94308 0.94954 1.42525 1.65269 1.03844 1.27112 1.18895 1.27515 0.84218 1.05489 0.93306 1.25580 1.02174 0.94975 1.02960 1.69905 1.49991 1.01792 1.41917 0.85363 0.79028 0.77859 0.79222 1.20147 1.22870 1.16519 1.22295 0.95636 0.85900 0.98509 0.92936 0.92681 0.92363 0.91738 0.92176 0.92447 0.91728 0.91092 0.92193 0.92206 0.90387 0.90981 0.88397 0.89507 0.88545 0.93402 0.88502 0.93991 0.90848 0.79528 0.93375 0.87989 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.13 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.12 -1.54 5.21 30.59 0.16 -1.38 16 4 C -0.11 -1.52 5.21 30.59 0.16 -1.36 16 5 C -0.12 -1.84 5.13 30.60 0.16 -1.68 16 6 C -0.13 -2.33 4.68 30.60 0.14 -2.19 16 7 C 0.07 1.63 3.19 29.85 0.10 1.73 16 8 H 0.13 2.32 5.70 -2.39 -0.01 2.30 16 9 F -0.20 -5.97 16.75 44.97 0.75 -5.22 16 10 C 0.49 13.54 7.04 87.66 0.62 14.15 16 11 O -0.56 -18.62 16.00 -3.05 -0.05 -18.67 16 12 N -0.59 -14.94 2.97 -818.07 -2.43 -17.36 16 13 C 0.11 2.47 6.44 86.36 0.56 3.03 16 14 C -0.12 -3.06 6.08 30.67 0.19 -2.87 16 15 C -0.13 -4.01 5.46 30.62 0.17 -3.84 16 16 C 0.17 5.74 2.93 45.22 0.13 5.87 16 17 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 18 N -0.74 -31.58 4.93 -321.88 -1.59 -33.16 16 19 C -0.23 -12.60 10.41 84.03 0.87 -11.73 16 20 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 21 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 22 N -0.99 -62.22 13.97 21.65 0.30 -61.92 16 23 Si 0.96 42.73 27.74 68.60 1.90 44.64 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.24 -9.22 6.52 99.48 0.65 -8.58 16 27 C 0.10 2.51 5.69 86.51 0.49 3.00 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.06 1.07 7.94 -2.39 -0.02 1.05 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.55 8.04 -2.39 -0.02 1.53 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 2.07 7.00 -2.39 -0.02 2.06 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.37 14.41 5.66 -92.71 -0.52 13.88 16 48 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 49 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.10 2.27 5.43 -2.39 -0.01 2.26 16 Total: -1.00 -70.44 394.54 4.31 -66.13 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.31 Total: 28.36 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.10 Total: -2.78 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -3.71 Total: -112.45 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.75 Total: -5.22 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.90 Total: 44.64 kcal Total: -70.44 4.31 -66.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210679011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.541 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds