Wall clock time and date at job start Tue Mar 31 2020 10:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42898 * 109.47397 * 2 1 4 4 C 1.42894 * 114.00650 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47443 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47191 * 64.99626 * 5 4 3 7 7 C 1.42904 * 114.00069 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46777 * 29.99988 * 7 6 5 9 9 C 1.52999 * 109.47201 * 270.00392 * 7 6 5 10 10 C 1.50697 * 109.47214 * 150.00203 * 7 6 5 11 11 O 1.21280 * 120.00058 * 10.09388 * 10 7 6 12 12 N 1.34773 * 119.99981 * 190.09786 * 10 7 6 13 13 C 1.46922 * 120.63276 * 5.08135 * 12 10 7 14 14 C 1.52761 * 109.00788 * 233.58551 * 13 12 10 15 15 C 1.53040 * 109.38340 * 305.58727 * 14 13 12 16 16 C 1.53035 * 109.53956 * 61.23872 * 15 14 13 17 17 H 1.09000 * 109.50012 * 58.59002 * 16 15 14 18 18 N 1.46498 * 109.52355 * 178.67114 * 16 15 14 19 19 C 1.36944 * 119.99581 * 274.85158 * 18 16 15 20 20 H 1.07989 * 120.00261 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99623 * 179.97438 * 19 18 16 22 22 N 1.31625 * 120.00106 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99965 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47276 * 60.00317 * 23 21 19 25 25 H 1.48505 * 109.47389 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47443 * 300.00335 * 23 21 19 27 27 C 1.46926 * 120.62953 * 185.35768 * 12 10 7 28 28 H 1.08997 * 109.47510 * 300.00143 * 1 2 3 29 29 H 1.09008 * 109.47023 * 60.00235 * 1 2 3 30 30 H 1.09004 * 109.47137 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47286 * 120.00253 * 2 1 3 32 32 H 1.08997 * 109.47510 * 239.99857 * 2 1 3 33 33 H 1.09006 * 109.46990 * 300.00156 * 4 3 2 34 34 H 1.09002 * 109.47224 * 59.99754 * 4 3 2 35 35 H 1.08998 * 109.47387 * 185.00205 * 5 4 3 36 36 H 1.09005 * 109.46781 * 304.99667 * 5 4 3 37 37 H 1.09004 * 109.46870 * 175.00548 * 9 7 6 38 38 H 1.08999 * 109.47077 * 295.00761 * 9 7 6 39 39 H 1.09000 * 109.47352 * 55.00719 * 9 7 6 40 40 H 1.08999 * 109.58360 * 353.41545 * 13 12 10 41 41 H 1.08993 * 109.58939 * 113.84362 * 13 12 10 42 42 H 1.09003 * 109.56632 * 185.54881 * 14 13 12 43 43 H 1.08998 * 109.38895 * 65.51465 * 14 13 12 44 44 H 1.09006 * 109.45534 * 301.21906 * 15 14 13 45 45 H 1.09002 * 109.45036 * 181.25647 * 15 14 13 46 46 H 0.97004 * 120.00334 * 94.85734 * 18 16 15 47 47 H 0.96998 * 119.99876 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58778 * 246.15405 * 27 12 10 49 49 H 1.08999 * 109.58837 * 6.44104 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 8 3.3974 3.5451 1.2221 7 6 3.7191 4.9336 1.3252 8 1 3.7321 5.3784 0.3301 9 6 5.0966 5.0914 1.9722 10 6 2.6838 5.6276 2.1723 11 8 1.8693 4.9752 2.7901 12 7 2.6631 6.9734 2.2431 13 6 3.5698 7.7807 1.4157 14 6 4.3468 8.7379 2.3177 15 6 3.3629 9.5575 3.1558 16 6 2.5388 8.6192 4.0404 17 1 3.2063 8.0468 4.6845 18 7 1.6192 9.4064 4.8656 19 6 2.0468 9.9333 6.0550 20 1 3.0620 9.7689 6.3846 21 6 1.1756 10.6796 6.8367 22 7 -0.0616 10.8804 6.4348 23 14 1.7587 11.3978 8.4595 24 1 2.8975 12.3184 8.2128 25 1 0.6461 12.1460 9.0979 26 1 2.1959 10.2995 9.3583 27 6 1.7374 7.6608 3.1538 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 3.8332 0.9767 0.8909 34 1 3.8340 0.9765 -0.8891 35 1 4.9081 3.0256 -0.0880 36 1 3.3498 3.4417 -0.8408 37 1 5.3805 6.1438 1.9702 38 1 5.0597 4.7269 2.9987 39 1 5.8309 4.5159 1.4084 40 1 4.2673 7.1263 0.8928 41 1 2.9908 8.3541 0.6918 42 1 4.9495 9.4085 1.7051 43 1 4.9977 8.1649 2.9779 44 1 2.6966 10.1116 2.4946 45 1 3.9154 10.2565 3.7836 46 1 0.7074 9.5543 4.5695 47 1 -0.6702 11.4022 6.9808 48 1 1.0059 8.2242 2.5745 49 1 1.2244 6.9272 3.7757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211229518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:04 Heat of formation + Delta-G solvation = -116.067424 kcal Electronic energy + Delta-G solvation = -27081.056038 eV Core-core repulsion = 23236.824477 eV Total energy + Delta-G solvation = -3844.231560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28218 -38.66383 -37.73244 -36.86578 -34.56100 -32.69213 -32.09553 -31.45514 -30.93232 -29.12392 -28.20152 -25.68472 -24.20080 -23.33599 -23.00724 -22.64018 -22.04213 -20.21714 -18.84607 -17.61327 -17.18866 -17.10785 -16.84409 -16.16667 -15.55468 -15.42091 -14.97042 -14.73268 -14.48607 -14.18944 -14.01985 -13.60114 -13.50076 -13.34429 -13.15797 -12.93851 -12.83817 -12.57674 -12.38834 -12.33076 -12.14763 -11.84951 -11.59553 -11.38069 -11.14866 -11.08219 -10.92494 -10.88150 -10.64965 -10.40423 -10.34522 -10.09846 -10.01452 -9.83024 -9.69595 -9.30314 -8.89650 -8.36606 -6.97610 -5.76152 -3.05856 2.75927 2.81599 3.41047 3.44883 3.49391 3.50338 3.67261 4.43897 4.59442 4.62450 4.74604 4.77828 4.84043 4.91136 4.93195 4.95217 5.07168 5.10264 5.13433 5.14583 5.27078 5.32298 5.44782 5.48562 5.51430 5.52569 5.58648 5.66967 5.69759 5.76543 5.83117 5.92534 5.93459 6.07096 6.18125 6.26018 6.40083 6.55173 6.68937 6.84709 6.93471 7.02530 7.05880 7.60252 7.69921 8.37917 8.42356 9.52820 10.08315 10.43356 11.46280 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.002598 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.849125 B =10776.504069 C =11628.774623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.378 6.378 4 C 0.066 3.934 5 C 0.060 3.940 6 O -0.347 6.347 7 C 0.073 3.927 8 H 0.082 0.918 9 C -0.174 4.174 10 C 0.514 3.486 11 O -0.517 6.517 12 N -0.604 5.604 13 C 0.103 3.897 14 C -0.134 4.134 15 C -0.137 4.137 16 C 0.169 3.831 17 H 0.050 0.950 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.108 3.892 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.065 0.935 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 -16.743 -18.831 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.011 4.011 5 C -0.017 4.017 6 O -0.265 6.265 7 C 0.011 3.989 8 H 0.100 0.900 9 C -0.231 4.231 10 C 0.300 3.700 11 O -0.391 6.391 12 N -0.340 5.340 13 C -0.020 4.020 14 C -0.173 4.173 15 C -0.178 4.178 16 C 0.058 3.942 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.014 4.014 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.218 0.782 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.666 -17.005 -18.167 27.073 hybrid contribution 0.423 0.536 0.528 0.863 sum 11.088 -16.469 -17.639 26.558 Atomic orbital electron populations 1.21740 0.93652 1.02075 1.03501 1.22448 0.95873 0.83849 0.99727 1.88020 1.20233 1.26150 1.95320 1.22468 0.82561 0.95319 1.00740 1.22629 0.98258 0.92993 0.87771 1.88138 1.80517 1.20594 1.37283 1.21896 0.94023 0.83844 0.99130 0.90038 1.22326 0.94784 1.03266 1.02766 1.20250 0.85085 0.82002 0.82683 1.90730 1.39195 1.64415 1.44757 1.48037 1.39085 1.04751 1.42140 1.21787 0.92617 0.94196 0.93404 1.21884 0.98514 0.98212 0.98709 1.22280 0.97860 0.99108 0.98512 1.20475 0.91923 0.90846 0.90994 0.93215 1.42306 1.11551 1.60988 1.21346 1.19154 0.96337 1.25627 0.95910 0.91219 1.24754 0.95881 1.01156 0.99047 1.69654 1.04727 1.44633 1.38970 0.86260 0.77293 0.78815 0.83754 1.21285 1.21679 1.21236 1.21999 0.91578 0.95995 0.91852 0.91438 0.91934 0.91225 0.93389 0.93740 0.92332 0.91912 0.91670 0.92333 0.90335 0.90929 0.91401 0.90323 0.91257 0.91272 0.91782 0.92430 0.91526 0.78164 0.93400 0.91659 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.15 0.38 -0.92 16 2 C 0.06 0.52 6.66 37.15 0.25 0.77 16 3 O -0.38 -4.60 10.31 -40.09 -0.41 -5.01 16 4 C 0.07 0.60 6.32 37.16 0.23 0.83 16 5 C 0.06 0.56 6.13 37.16 0.23 0.79 16 6 O -0.35 -4.80 9.51 -59.59 -0.57 -5.37 16 7 C 0.07 0.88 2.28 -27.88 -0.06 0.81 16 8 H 0.08 0.75 6.80 -51.93 -0.35 0.40 16 9 C -0.17 -1.68 9.19 37.16 0.34 -1.34 16 10 C 0.51 8.49 7.03 -10.99 -0.08 8.41 16 11 O -0.52 -11.08 15.97 -14.15 -0.23 -11.31 16 12 N -0.60 -9.20 2.98 -173.04 -0.52 -9.71 16 13 C 0.10 1.15 5.57 -3.93 -0.02 1.13 16 14 C -0.13 -1.63 5.95 -26.83 -0.16 -1.79 16 15 C -0.14 -2.30 5.47 -26.69 -0.15 -2.45 16 16 C 0.17 3.38 2.92 -67.81 -0.20 3.18 16 17 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 18 N -0.72 -18.13 5.12 -53.31 -0.27 -18.41 16 19 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.11 1.99 5.89 -3.71 -0.02 1.97 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.41 7.78 -51.93 -0.40 0.01 16 36 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.08 0.67 5.68 -51.93 -0.30 0.37 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.49 7.78 -51.93 -0.40 0.09 16 40 H 0.08 0.65 4.52 -51.93 -0.23 0.42 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.78 7.78 -51.93 -0.40 0.37 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.09 1.94 7.04 -51.93 -0.37 1.58 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -35.29 390.28 -8.57 -43.87 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.66 Total: 5.97 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 0.50 Total: 4.16 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.06 Total: -55.69 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.21 Total: -21.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.29 -8.57 -43.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211229518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.201 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds