Wall clock time and date at job start Tue Mar 31 2020 10:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47150 * 2 1 4 4 C 1.42902 * 113.99809 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46980 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47308 * 64.99634 * 5 4 3 7 7 C 1.42895 * 114.00204 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47073 * 330.00144 * 7 6 5 9 9 C 1.52999 * 109.47298 * 89.99929 * 7 6 5 10 10 C 1.50700 * 109.47584 * 210.00289 * 7 6 5 11 11 O 1.21282 * 119.99431 * 348.31359 * 10 7 6 12 12 N 1.34766 * 120.00393 * 168.31335 * 10 7 6 13 13 C 1.46930 * 120.63201 * 4.25835 * 12 10 7 14 14 C 1.52762 * 109.01103 * 233.58329 * 13 12 10 15 15 C 1.53036 * 109.38105 * 305.58899 * 14 13 12 16 16 C 1.53039 * 109.54208 * 61.23844 * 15 14 13 17 17 H 1.09005 * 109.49397 * 58.58652 * 16 15 14 18 18 N 1.46501 * 109.52527 * 178.66599 * 16 15 14 19 19 C 1.36937 * 119.99883 * 274.85808 * 18 16 15 20 20 H 1.07999 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99867 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99968 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99859 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47328 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46722 * 119.99971 * 23 21 19 26 26 H 1.48498 * 109.47007 * 239.99874 * 23 21 19 27 27 C 1.46930 * 120.63454 * 184.53782 * 12 10 7 28 28 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47130 * 300.00004 * 1 2 3 30 30 H 1.08999 * 109.46916 * 60.00363 * 1 2 3 31 31 H 1.09000 * 109.47069 * 120.00168 * 2 1 3 32 32 H 1.09008 * 109.47137 * 239.99734 * 2 1 3 33 33 H 1.09000 * 109.47081 * 299.99397 * 4 3 2 34 34 H 1.09000 * 109.47634 * 59.99970 * 4 3 2 35 35 H 1.08998 * 109.47011 * 185.00109 * 5 4 3 36 36 H 1.08999 * 109.47019 * 304.99471 * 5 4 3 37 37 H 1.09005 * 109.46896 * 56.91989 * 9 7 6 38 38 H 1.08997 * 109.47341 * 176.91578 * 9 7 6 39 39 H 1.09005 * 109.47131 * 296.91901 * 9 7 6 40 40 H 1.09002 * 109.58518 * 353.42037 * 13 12 10 41 41 H 1.09003 * 109.58882 * 113.84109 * 13 12 10 42 42 H 1.09003 * 109.56031 * 185.55142 * 14 13 12 43 43 H 1.08999 * 109.38071 * 65.51397 * 14 13 12 44 44 H 1.09000 * 109.45928 * 301.21154 * 15 14 13 45 45 H 1.09007 * 109.44651 * 181.25635 * 15 14 13 46 46 H 0.97001 * 119.99903 * 94.85401 * 18 16 15 47 47 H 0.97002 * 119.99859 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58668 * 246.16114 * 27 12 10 49 49 H 1.08999 * 109.57940 * 6.44152 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 8 3.3986 3.5447 1.2217 7 6 3.7194 4.9334 1.3244 8 1 4.6310 5.1382 0.7629 9 6 2.5703 5.7659 0.7523 10 6 3.9293 5.2948 2.7722 11 8 3.6127 4.5136 3.6442 12 7 4.4688 6.4860 3.0981 13 6 4.7714 7.4801 2.0593 14 6 6.2333 7.9045 2.1874 15 6 6.4989 8.3864 3.6154 16 6 6.2383 7.2427 4.5984 17 1 6.8823 6.3982 4.3530 18 7 6.5233 7.6950 5.9624 19 6 7.8024 7.6414 6.4482 20 1 8.6011 7.2654 5.8260 21 6 8.0724 8.0694 7.7408 22 7 7.0990 8.5271 8.4993 23 14 9.8173 7.9957 8.4038 24 1 10.7204 7.4464 7.3608 25 1 10.2639 9.3625 8.7748 26 1 9.8546 7.1202 9.6027 27 6 4.7713 6.8131 4.4982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.8340 0.9764 0.8892 34 1 3.8334 0.9766 -0.8908 35 1 4.9082 3.0254 -0.0899 36 1 3.3493 3.4418 -0.8412 37 1 1.6473 5.5207 1.2777 38 1 2.7907 6.8257 0.8803 39 1 2.4543 5.5445 -0.3087 40 1 4.6043 7.0425 1.0750 41 1 4.1284 8.3508 2.1883 42 1 6.4415 8.7125 1.4860 43 1 6.8777 7.0541 1.9645 44 1 5.8373 9.2213 3.8459 45 1 7.5361 8.7104 3.7020 46 1 5.8059 8.0324 6.5213 47 1 7.2877 8.8265 9.4024 48 1 4.1282 7.6282 4.8302 49 1 4.6017 5.9362 5.1230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211229527.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:08 Heat of formation + Delta-G solvation = -116.560116 kcal Electronic energy + Delta-G solvation = -26984.934752 eV Core-core repulsion = 23140.681827 eV Total energy + Delta-G solvation = -3844.252925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29734 -38.67532 -37.75223 -36.87830 -34.58610 -32.74689 -32.11334 -31.44164 -30.97529 -29.12448 -28.19010 -25.75257 -24.16266 -23.39430 -23.05449 -22.64267 -22.03636 -20.13296 -19.02371 -17.57150 -17.18616 -17.14112 -16.88967 -16.10991 -15.77313 -15.22476 -14.96268 -14.76174 -14.49244 -14.16102 -13.98199 -13.70538 -13.58872 -13.41439 -13.05833 -12.94845 -12.83176 -12.64967 -12.49422 -12.35859 -12.14132 -11.82013 -11.67017 -11.47858 -11.14702 -11.07016 -10.93401 -10.91715 -10.66140 -10.41747 -10.35149 -10.06265 -9.98938 -9.86573 -9.71821 -9.32178 -8.92177 -8.39329 -6.99108 -5.77966 -3.07585 2.71214 2.82151 3.38339 3.42925 3.48382 3.50754 3.66647 4.43327 4.57838 4.63278 4.73016 4.77212 4.81750 4.90745 4.91012 4.96489 5.06202 5.10551 5.11498 5.15011 5.25107 5.31655 5.45302 5.46416 5.51229 5.52525 5.57039 5.63820 5.65786 5.74885 5.81350 5.84693 5.94285 6.02935 6.16062 6.23618 6.38143 6.53453 6.66957 6.83493 6.90962 7.00536 7.03994 7.57615 7.69399 8.34766 8.40317 9.51200 10.06553 10.41638 11.44566 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.020390 B = 0.002483 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.915422 B =11276.220519 C =11857.289663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.061 3.939 6 O -0.347 6.347 7 C 0.072 3.928 8 H 0.083 0.917 9 C -0.174 4.174 10 C 0.514 3.486 11 O -0.519 6.519 12 N -0.604 5.604 13 C 0.103 3.897 14 C -0.135 4.135 15 C -0.137 4.137 16 C 0.168 3.832 17 H 0.050 0.950 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.108 3.892 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.066 0.934 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 -9.580 -23.778 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.265 6.265 7 C 0.011 3.989 8 H 0.101 0.899 9 C -0.231 4.231 10 C 0.300 3.700 11 O -0.394 6.394 12 N -0.340 5.340 13 C -0.020 4.020 14 C -0.174 4.174 15 C -0.178 4.178 16 C 0.057 3.943 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.014 4.014 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.690 -10.001 -23.093 26.967 hybrid contribution 1.161 0.154 0.328 1.216 sum -8.529 -9.847 -22.765 26.229 Atomic orbital electron populations 1.21734 0.93730 1.02117 1.03264 1.22456 0.95741 0.83906 0.99910 1.87967 1.20452 1.26179 1.95380 1.22487 0.82289 0.95404 1.00955 1.22632 0.98313 0.92823 0.87837 1.88135 1.80137 1.20803 1.37452 1.21886 0.98747 0.83859 0.94402 0.89943 1.22328 0.99148 0.99934 1.01706 1.20270 0.77855 0.81446 0.90418 1.90722 1.49155 1.49254 1.50257 1.48048 1.62022 1.15224 1.08681 1.21832 0.97321 0.92147 0.90702 1.21883 0.95241 1.01130 0.99112 1.22282 1.02338 1.00209 0.92949 1.20477 0.92401 0.94530 0.86867 0.93239 1.42317 1.08204 1.76086 1.09593 1.19244 0.85743 1.35529 0.96401 0.91112 1.24758 0.97534 1.01831 0.96784 1.69671 1.30484 1.48717 1.09036 0.86113 0.84131 0.77152 0.78760 1.20572 1.21880 1.21814 1.22004 0.97305 1.01799 0.80338 0.91208 0.91604 0.91982 0.93286 0.93674 0.92132 0.91837 0.91623 0.92294 0.90854 0.90591 0.91343 0.90218 0.91104 0.91234 0.91905 0.92398 0.91526 0.78161 0.93498 0.91616 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.48 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.32 10.31 -40.08 -0.41 -4.73 16 4 C 0.07 0.61 6.32 37.16 0.23 0.84 16 5 C 0.06 0.58 6.13 37.16 0.23 0.81 16 6 O -0.35 -4.83 9.51 -59.55 -0.57 -5.40 16 7 C 0.07 0.88 2.28 -27.88 -0.06 0.81 16 8 H 0.08 0.77 6.90 -51.93 -0.36 0.42 16 9 C -0.17 -1.66 9.12 37.16 0.34 -1.33 16 10 C 0.51 8.36 7.05 -10.99 -0.08 8.28 16 11 O -0.52 -10.94 15.97 -14.08 -0.22 -11.16 16 12 N -0.60 -9.07 2.98 -173.03 -0.52 -9.59 16 13 C 0.10 1.14 5.17 -3.93 -0.02 1.12 16 14 C -0.13 -1.64 6.06 -26.83 -0.16 -1.80 16 15 C -0.14 -2.29 5.47 -26.69 -0.15 -2.44 16 16 C 0.17 3.35 2.92 -67.81 -0.20 3.15 16 17 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 18 N -0.72 -18.04 5.12 -53.31 -0.27 -18.32 16 19 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.11 1.96 5.90 -3.71 -0.02 1.94 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.06 0.48 7.94 -51.93 -0.41 0.07 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.61 5.89 -51.93 -0.31 0.31 16 39 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 40 H 0.08 0.66 4.70 -51.93 -0.24 0.41 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 46 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.09 1.92 7.03 -51.93 -0.37 1.56 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -34.88 391.11 -8.62 -43.51 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.72 Total: 5.63 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 0.50 Total: 4.17 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.06 Total: -55.35 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.20 Total: -21.29 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.88 -8.62 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211229527.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.053 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds