Wall clock time and date at job start Tue Mar 31 2020 10:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47150 * 2 1 4 4 C 1.42902 * 113.99809 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46980 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47308 * 64.99634 * 5 4 3 7 7 C 1.42895 * 114.00204 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47073 * 330.00144 * 7 6 5 9 9 C 1.52999 * 109.47298 * 89.99929 * 7 6 5 10 10 C 1.50700 * 109.47584 * 210.00289 * 7 6 5 11 11 O 1.21282 * 119.99431 * 348.31359 * 10 7 6 12 12 N 1.34766 * 120.00393 * 168.31335 * 10 7 6 13 13 C 1.46930 * 120.63201 * 4.25835 * 12 10 7 14 14 C 1.52762 * 109.01103 * 233.58329 * 13 12 10 15 15 C 1.53036 * 109.38105 * 305.58899 * 14 13 12 16 16 C 1.53039 * 109.54208 * 61.23844 * 15 14 13 17 17 H 1.09005 * 109.49397 * 58.58652 * 16 15 14 18 18 N 1.46501 * 109.52527 * 178.66599 * 16 15 14 19 19 C 1.36937 * 119.99883 * 274.85808 * 18 16 15 20 20 H 1.07999 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99867 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99968 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99859 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47328 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46722 * 119.99971 * 23 21 19 26 26 H 1.48498 * 109.47007 * 239.99874 * 23 21 19 27 27 C 1.46930 * 120.63454 * 184.53782 * 12 10 7 28 28 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47130 * 300.00004 * 1 2 3 30 30 H 1.08999 * 109.46916 * 60.00363 * 1 2 3 31 31 H 1.09000 * 109.47069 * 120.00168 * 2 1 3 32 32 H 1.09008 * 109.47137 * 239.99734 * 2 1 3 33 33 H 1.09000 * 109.47081 * 299.99397 * 4 3 2 34 34 H 1.09000 * 109.47634 * 59.99970 * 4 3 2 35 35 H 1.08998 * 109.47011 * 185.00109 * 5 4 3 36 36 H 1.08999 * 109.47019 * 304.99471 * 5 4 3 37 37 H 1.09005 * 109.46896 * 56.91989 * 9 7 6 38 38 H 1.08997 * 109.47341 * 176.91578 * 9 7 6 39 39 H 1.09005 * 109.47131 * 296.91901 * 9 7 6 40 40 H 1.09002 * 109.58518 * 353.42037 * 13 12 10 41 41 H 1.09003 * 109.58882 * 113.84109 * 13 12 10 42 42 H 1.09003 * 109.56031 * 185.55142 * 14 13 12 43 43 H 1.08999 * 109.38071 * 65.51397 * 14 13 12 44 44 H 1.09000 * 109.45928 * 301.21154 * 15 14 13 45 45 H 1.09007 * 109.44651 * 181.25635 * 15 14 13 46 46 H 0.97001 * 119.99903 * 94.85401 * 18 16 15 47 47 H 0.97002 * 119.99859 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58668 * 246.16114 * 27 12 10 49 49 H 1.08999 * 109.57940 * 6.44152 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 8 3.3986 3.5447 1.2217 7 6 3.7194 4.9334 1.3244 8 1 4.6310 5.1382 0.7629 9 6 2.5703 5.7659 0.7523 10 6 3.9293 5.2948 2.7722 11 8 3.6127 4.5136 3.6442 12 7 4.4688 6.4860 3.0981 13 6 4.7714 7.4801 2.0593 14 6 6.2333 7.9045 2.1874 15 6 6.4989 8.3864 3.6154 16 6 6.2383 7.2427 4.5984 17 1 6.8823 6.3982 4.3530 18 7 6.5233 7.6950 5.9624 19 6 7.8024 7.6414 6.4482 20 1 8.6011 7.2654 5.8260 21 6 8.0724 8.0694 7.7408 22 7 7.0990 8.5271 8.4993 23 14 9.8173 7.9957 8.4038 24 1 10.7204 7.4464 7.3608 25 1 10.2639 9.3625 8.7748 26 1 9.8546 7.1202 9.6027 27 6 4.7713 6.8131 4.4982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.8340 0.9764 0.8892 34 1 3.8334 0.9766 -0.8908 35 1 4.9082 3.0254 -0.0899 36 1 3.3493 3.4418 -0.8412 37 1 1.6473 5.5207 1.2777 38 1 2.7907 6.8257 0.8803 39 1 2.4543 5.5445 -0.3087 40 1 4.6043 7.0425 1.0750 41 1 4.1284 8.3508 2.1883 42 1 6.4415 8.7125 1.4860 43 1 6.8777 7.0541 1.9645 44 1 5.8373 9.2213 3.8459 45 1 7.5361 8.7104 3.7020 46 1 5.8059 8.0324 6.5213 47 1 7.2877 8.8265 9.4024 48 1 4.1282 7.6282 4.8302 49 1 4.6017 5.9362 5.1230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211229527.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:08 Heat of formation + Delta-G solvation = -140.858377 kcal Electronic energy + Delta-G solvation = -26985.988404 eV Core-core repulsion = 23140.681827 eV Total energy + Delta-G solvation = -3845.306577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49795 -39.55582 -38.80989 -38.04648 -36.28641 -34.13518 -33.11337 -32.77694 -32.05944 -30.08773 -29.62087 -26.92421 -25.92748 -24.57165 -23.67934 -23.41753 -23.38766 -21.51453 -20.30846 -19.18064 -18.53919 -17.96623 -17.81779 -17.12996 -16.87122 -16.49163 -16.22133 -15.91230 -15.73005 -15.41636 -15.20744 -15.16219 -14.74068 -14.64696 -14.39700 -13.99615 -13.74846 -13.66678 -13.43777 -13.24028 -13.19369 -12.92334 -12.87306 -12.61120 -12.34819 -12.28609 -12.20916 -12.16825 -12.06428 -11.85827 -11.82832 -11.71355 -11.61487 -10.94254 -10.90986 -10.57810 -10.45001 -9.71145 -9.04638 -7.97064 -5.26769 1.44666 1.46722 1.50460 1.56365 1.70125 2.53902 2.74466 2.78962 3.35742 3.43701 3.75449 3.87044 3.96745 4.04068 4.07452 4.10946 4.13962 4.15314 4.24557 4.26615 4.33419 4.35715 4.45094 4.49147 4.53591 4.56893 4.63988 4.74819 4.79331 4.81892 4.83290 4.86847 4.90942 5.03145 5.07500 5.16705 5.22907 5.25813 5.40057 5.41527 5.50016 5.59668 6.07985 6.24655 6.29636 6.43068 7.12047 7.30282 8.03155 8.27350 9.26519 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.020390 B = 0.002483 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.915422 B =11276.220519 C =11857.289663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.059 3.941 5 C 0.054 3.946 6 O -0.387 6.387 7 C 0.078 3.922 8 H 0.120 0.880 9 C -0.168 4.168 10 C 0.504 3.496 11 O -0.582 6.582 12 N -0.600 5.600 13 C 0.097 3.903 14 C -0.125 4.125 15 C -0.128 4.128 16 C 0.167 3.833 17 H 0.031 0.969 18 N -0.736 5.736 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.290 1.290 26 H -0.296 1.296 27 C 0.120 3.880 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.069 0.931 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -9.188 -27.744 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.329 6.329 4 C -0.017 4.017 5 C -0.022 4.022 6 O -0.307 6.307 7 C 0.017 3.983 8 H 0.138 0.862 9 C -0.225 4.225 10 C 0.293 3.707 11 O -0.461 6.461 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.050 0.950 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.190 1.190 25 H -0.217 1.217 26 H -0.223 1.223 27 C -0.005 4.005 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.983 -9.599 -27.155 30.170 hybrid contribution 0.912 -0.035 1.504 1.759 sum -8.071 -9.634 -25.651 28.564 Atomic orbital electron populations 1.21759 0.93254 1.03262 1.02449 1.22639 0.96257 0.83092 1.00710 1.87928 1.21640 1.27752 1.95564 1.22672 0.81558 0.95799 1.01675 1.22928 0.99850 0.92656 0.86772 1.88104 1.80839 1.21824 1.39885 1.21992 1.01349 0.83837 0.91086 0.86244 1.22334 0.96874 1.00515 1.02767 1.21297 0.76497 0.80731 0.92179 1.90691 1.51832 1.51172 1.52439 1.48124 1.61293 1.15999 1.07968 1.22232 0.96905 0.92064 0.91176 1.21849 0.95953 1.02378 0.96162 1.22075 1.01148 0.98434 0.95201 1.20640 0.93007 0.95146 0.85385 0.95046 1.42512 1.07113 1.76378 1.11639 1.19583 0.86843 1.33981 0.96475 0.90754 1.25587 1.01442 1.02554 0.97319 1.69826 1.32499 1.50482 1.09148 0.85066 0.79820 0.76873 0.77961 1.18990 1.21745 1.22301 1.21570 0.96239 1.00124 0.82520 0.89123 0.93385 0.91755 0.93798 0.91478 0.93808 0.88608 0.89381 0.90343 0.93320 0.88548 0.88548 0.86042 0.89223 0.87425 0.91739 0.92433 0.93379 0.79530 0.93991 0.91269 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.79 6.66 71.98 0.48 1.27 16 3 O -0.41 -8.96 10.31 -144.34 -1.49 -10.45 16 4 C 0.06 1.02 6.32 71.98 0.45 1.47 16 5 C 0.05 0.89 6.13 71.98 0.44 1.33 16 6 O -0.39 -10.33 9.51 -125.73 -1.20 -11.53 16 7 C 0.08 1.69 2.28 29.85 0.07 1.76 16 8 H 0.12 1.66 6.90 -2.38 -0.02 1.64 16 9 C -0.17 -2.64 9.12 71.98 0.66 -1.98 16 10 C 0.50 16.21 7.05 87.66 0.62 16.83 16 11 O -0.58 -25.74 15.97 15.74 0.25 -25.49 16 12 N -0.60 -17.32 2.98 -819.73 -2.44 -19.76 16 13 C 0.10 1.75 5.17 86.22 0.45 2.19 16 14 C -0.12 -2.54 6.06 30.53 0.19 -2.36 16 15 C -0.13 -4.12 5.47 30.62 0.17 -3.95 16 16 C 0.17 6.79 2.92 45.07 0.13 6.92 16 17 H 0.03 1.38 8.08 -2.38 -0.02 1.36 16 18 N -0.74 -38.09 5.12 -322.57 -1.65 -39.75 16 19 C -0.24 -13.39 9.93 84.03 0.83 -12.56 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 22 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 23 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 C 0.12 4.47 5.90 86.36 0.51 4.98 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 36 H 0.08 0.98 7.94 -2.39 -0.02 0.96 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 38 H 0.10 1.09 5.89 -2.39 -0.01 1.08 16 39 H 0.10 1.02 7.94 -2.38 -0.02 1.00 16 40 H 0.12 1.25 4.70 -2.39 -0.01 1.24 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.37 20.72 7.80 -92.71 -0.72 19.99 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 49 H 0.06 2.48 7.03 -2.39 -0.02 2.46 16 Total: -1.00 -81.74 391.11 2.18 -79.57 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.20 Total: 28.08 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.20 Total: 10.50 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -3.81 Total: -119.57 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -2.43 Total: -47.47 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -81.74 2.18 -79.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211229527.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.293 kcal (2) G-P(sol) polarization free energy of solvation -81.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds