Wall clock time and date at job start Tue Mar 31 2020 10:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47313 * 2 1 4 4 C 1.42895 * 114.00206 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47699 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47041 * 64.99582 * 5 4 3 7 7 C 1.42895 * 113.99759 * 180.02562 * 6 5 4 8 8 H 1.08989 * 109.47612 * 330.00235 * 7 6 5 9 9 C 1.53002 * 109.47167 * 90.00615 * 7 6 5 10 10 C 1.50697 * 109.46901 * 209.99876 * 7 6 5 11 11 O 1.21283 * 120.00344 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00080 * 180.02562 * 10 7 6 13 13 C 1.46504 * 120.00141 * 180.02562 * 12 10 7 14 14 H 1.08999 * 110.91803 * 31.09742 * 13 12 10 15 15 C 1.54911 * 111.00374 * 267.19616 * 13 12 10 16 16 N 1.47422 * 104.83149 * 204.91600 * 15 13 12 17 17 C 1.36938 * 125.64771 * 204.09077 * 16 15 13 18 18 H 1.08000 * 120.00398 * 169.98025 * 17 16 15 19 19 C 1.38816 * 120.00207 * 349.98872 * 17 16 15 20 20 N 1.31624 * 119.99580 * 350.41769 * 19 17 16 21 21 Si 1.86797 * 120.00252 * 170.41912 * 19 17 16 22 22 H 1.48500 * 109.47032 * 94.13825 * 21 19 17 23 23 H 1.48500 * 109.47027 * 214.13643 * 21 19 17 24 24 H 1.48502 * 109.47194 * 334.13957 * 21 19 17 25 25 C 1.47017 * 108.70246 * 24.12982 * 16 15 13 26 26 C 1.54322 * 107.27442 * 358.94134 * 25 16 15 27 27 H 1.09000 * 110.71969 * 96.17065 * 26 25 16 28 28 C 1.52999 * 110.71900 * 219.44498 * 26 25 16 29 29 H 1.08999 * 109.47181 * 59.99423 * 1 2 3 30 30 H 1.08991 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46620 * 300.00341 * 1 2 3 32 32 H 1.09004 * 109.46760 * 240.00387 * 2 1 3 33 33 H 1.08991 * 109.46961 * 120.00294 * 2 1 3 34 34 H 1.09009 * 109.47263 * 59.99832 * 4 3 2 35 35 H 1.08999 * 109.47498 * 300.00200 * 4 3 2 36 36 H 1.09008 * 109.46598 * 305.00272 * 5 4 3 37 37 H 1.08996 * 109.47668 * 184.99967 * 5 4 3 38 38 H 1.09005 * 109.47440 * 59.99471 * 9 7 6 39 39 H 1.09001 * 109.47474 * 179.97438 * 9 7 6 40 40 H 1.09000 * 109.46851 * 299.99888 * 9 7 6 41 41 H 0.97002 * 119.99981 * 0.02562 * 12 10 7 42 42 H 1.09002 * 110.36302 * 86.07618 * 15 13 12 43 43 H 1.08999 * 110.36589 * 323.75933 * 15 13 12 44 44 H 0.97003 * 119.99654 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.88407 * 239.51731 * 25 16 15 46 46 H 1.09008 * 109.88036 * 118.36184 * 25 16 15 47 47 H 1.08998 * 109.47228 * 58.54543 * 28 26 25 48 48 H 1.08996 * 109.47298 * 178.54536 * 28 26 25 49 49 H 1.09006 * 109.46854 * 298.54197 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7197 4.9333 1.3243 8 1 4.6312 5.1381 0.7630 9 6 2.5705 5.7660 0.7524 10 6 3.9294 5.2947 2.7722 11 8 3.8158 4.4464 3.6316 12 7 4.2433 6.5605 3.1123 13 6 4.4478 6.9117 4.5198 14 1 4.8492 6.0656 5.0776 15 6 3.1345 7.4262 5.1602 16 7 3.5700 8.2795 6.2807 17 6 2.8292 8.5746 7.3939 18 1 3.2906 9.0743 8.2329 19 6 1.4850 8.2314 7.4442 20 7 0.8759 7.7967 6.3614 21 14 0.5409 8.3865 9.0486 22 1 -0.1401 9.7053 9.0967 23 1 -0.4714 7.3033 9.1338 24 1 1.4835 8.2742 10.1905 25 6 4.9310 8.7619 6.0045 26 6 5.3678 8.1538 4.6551 27 1 5.1903 8.8557 3.8403 28 6 6.8388 7.7355 4.7007 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.8333 0.9766 -0.8909 35 1 3.8341 0.9764 0.8891 36 1 3.3493 3.4419 -0.8412 37 1 4.9083 3.0254 -0.0899 38 1 1.6589 5.5612 1.3138 39 1 2.8151 6.8253 0.8311 40 1 2.4187 5.5046 -0.2949 41 1 4.3338 7.2391 2.4250 42 1 2.5394 6.5905 5.5287 43 1 2.5637 8.0101 4.4381 44 1 -0.0633 7.5565 6.3967 45 1 5.6074 8.4357 6.7945 46 1 4.9324 9.8500 5.9386 47 1 6.9858 7.0108 5.5014 48 1 7.1184 7.2859 3.7479 49 1 7.4601 8.6120 4.8850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211292244.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:29 Heat of formation + Delta-G solvation = -109.062687 kcal Electronic energy + Delta-G solvation = -27100.060140 eV Core-core repulsion = 23256.132328 eV Total energy + Delta-G solvation = -3843.927812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.80327 -38.54384 -37.77131 -36.87494 -33.91368 -32.82491 -32.21261 -31.04984 -30.35678 -28.98105 -27.65428 -25.64966 -24.48701 -23.29984 -22.95782 -22.59018 -20.59437 -20.06849 -19.43693 -17.30889 -17.18627 -16.89548 -16.76654 -16.03973 -15.62138 -15.21016 -14.88156 -14.69086 -14.30139 -13.99474 -13.75793 -13.53173 -13.01893 -12.91693 -12.80803 -12.72259 -12.51571 -12.45336 -12.31435 -12.12453 -11.71086 -11.62696 -11.55957 -11.37244 -11.31272 -11.01686 -10.94768 -10.75873 -10.60467 -10.35688 -9.93558 -9.90638 -9.84414 -9.77189 -9.70583 -9.17204 -8.55363 -8.40860 -6.76211 -5.68616 -3.02587 2.93297 3.11525 3.44352 3.47899 3.50095 3.52722 3.94975 4.54622 4.70566 4.83397 4.88219 4.92519 4.95238 5.02463 5.07743 5.15117 5.15949 5.20928 5.22857 5.32565 5.44158 5.45144 5.56487 5.57434 5.62805 5.71731 5.74471 5.78085 5.96408 5.97250 6.05148 6.15850 6.18767 6.25256 6.38815 6.48909 6.70005 6.82611 6.94616 7.01063 7.11084 7.50452 7.64036 7.84886 7.93803 8.30926 8.64350 9.23469 9.86008 10.52047 11.43708 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.003121 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.714578 B = 8970.432987 C =10599.894887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.346 6.346 7 C 0.073 3.927 8 H 0.081 0.919 9 C -0.170 4.170 10 C 0.512 3.488 11 O -0.517 6.517 12 N -0.711 5.711 13 C 0.119 3.881 14 H 0.092 0.908 15 C 0.170 3.830 16 N -0.602 5.602 17 C -0.233 4.233 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.914 5.914 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.141 3.859 26 C -0.110 4.110 27 H 0.074 0.926 28 C -0.137 4.137 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.394 0.606 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.253 0.747 45 H 0.027 0.973 46 H 0.024 0.976 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -9.166 -18.212 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.298 6.298 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.264 6.264 7 C 0.011 3.989 8 H 0.099 0.901 9 C -0.227 4.227 10 C 0.296 3.704 11 O -0.391 6.391 12 N -0.364 5.364 13 C 0.014 3.986 14 H 0.110 0.890 15 C 0.044 3.956 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.130 4.130 27 H 0.093 0.907 28 C -0.194 4.194 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.766 -9.780 -17.341 21.370 hybrid contribution -0.242 0.399 0.165 0.495 sum 7.524 -9.381 -17.176 20.967 Atomic orbital electron populations 1.21738 0.93706 1.02079 1.03400 1.22449 0.95792 0.83918 0.99792 1.87986 1.20378 1.26133 1.95348 1.22479 0.82382 0.95470 1.00788 1.22609 0.98092 0.92827 0.88039 1.88156 1.80099 1.20914 1.37213 1.21898 0.98683 0.83832 0.94461 0.90089 1.22224 0.99438 0.99491 1.01576 1.20229 0.77242 0.82782 0.90124 1.90736 1.48750 1.48616 1.50979 1.45793 1.71634 1.09681 1.09262 1.22673 0.98976 0.96665 0.80304 0.88971 1.21678 0.90442 0.94631 0.88865 1.44360 1.12280 1.55148 1.21085 1.18992 0.90734 1.34335 0.92046 0.90536 1.24847 0.96266 1.01732 0.97419 1.69956 1.10329 1.49730 1.26025 0.86134 0.79682 0.77195 0.82907 1.21651 1.21571 1.20571 1.21342 0.88323 0.96173 0.92672 1.22414 0.94447 0.96858 0.99263 0.90737 1.21733 0.95375 1.00963 1.01346 0.91968 0.91250 0.91478 0.93762 0.93322 0.91988 0.92198 0.92348 0.91817 0.90606 0.90967 0.91587 0.77241 0.90881 0.95372 0.93666 0.95516 0.95829 0.92508 0.93198 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.55 6.66 37.16 0.25 0.80 16 3 O -0.38 -4.79 10.31 -40.08 -0.41 -5.20 16 4 C 0.07 0.67 6.32 37.16 0.23 0.90 16 5 C 0.06 0.64 6.13 37.16 0.23 0.87 16 6 O -0.35 -5.25 9.49 -59.73 -0.57 -5.82 16 7 C 0.07 0.96 3.14 -27.88 -0.09 0.88 16 8 H 0.08 0.78 7.79 -51.94 -0.40 0.37 16 9 C -0.17 -1.99 9.42 37.16 0.35 -1.64 16 10 C 0.51 9.00 7.23 -10.99 -0.08 8.92 16 11 O -0.52 -11.80 16.14 -14.36 -0.23 -12.04 16 12 N -0.71 -11.38 5.09 -51.73 -0.26 -11.64 16 13 C 0.12 2.32 2.87 -65.78 -0.19 2.13 16 14 H 0.09 2.00 7.44 -51.93 -0.39 1.61 16 15 C 0.17 4.27 5.11 -2.53 -0.01 4.26 16 16 N -0.60 -15.79 3.39 -170.07 -0.58 -16.37 16 17 C -0.23 -6.67 10.24 -15.06 -0.15 -6.83 16 18 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 20 N -0.91 -27.84 10.68 55.49 0.59 -27.25 16 21 Si 0.91 22.75 29.56 -169.99 -5.03 17.72 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.14 2.94 6.84 -3.07 -0.02 2.92 16 26 C -0.11 -1.84 3.20 -88.79 -0.28 -2.13 16 27 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 28 C -0.14 -1.85 9.13 37.16 0.34 -1.51 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.54 7.87 -51.92 -0.41 0.13 16 37 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 40 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 41 H 0.39 4.88 7.98 -40.82 -0.33 4.55 16 42 H 0.07 2.17 6.94 -51.93 -0.36 1.81 16 43 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 44 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.03 0.55 7.82 -51.93 -0.41 0.14 16 46 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 47 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -36.43 397.23 -8.61 -45.04 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.97 Total: 1.23 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 0.86 Total: 8.35 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.25 Total: -55.26 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -1.21 Total: -23.06 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.43 -8.61 -45.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211292244.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.026 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds