Wall clock time and date at job start Tue Mar 31 2020 11:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46830 * 2 1 4 4 C 1.53002 * 109.46830 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47055 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47346 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47346 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46982 * 55.00221 * 7 6 5 9 9 F 1.39894 * 109.47038 * 294.99654 * 7 6 5 10 10 C 1.50704 * 109.47109 * 174.99613 * 7 6 5 11 11 O 1.21283 * 119.99962 * 45.00006 * 10 7 6 12 12 N 1.34777 * 120.00337 * 224.99941 * 10 7 6 13 13 C 1.47019 * 125.65383 * 180.02562 * 12 10 7 14 14 C 1.54320 * 107.27366 * 178.91810 * 13 12 10 15 15 H 1.09000 * 110.86807 * 96.23967 * 14 13 12 16 16 C 1.52991 * 110.72031 * 219.44021 * 14 13 12 17 17 C 1.55156 * 102.94440 * 337.81011 * 14 13 12 18 18 H 1.09005 * 111.00043 * 277.39069 * 17 14 13 19 19 N 1.46499 * 111.00686 * 153.57453 * 17 14 13 20 20 C 1.36935 * 119.99938 * 154.99984 * 19 17 14 21 21 H 1.07999 * 120.00083 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99632 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 0.27829 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71949 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72145 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72253 * 24 22 20 28 28 C 1.47426 * 125.64363 * 359.97438 * 12 10 7 29 29 H 1.08996 * 109.47529 * 60.00069 * 1 2 3 30 30 H 1.09002 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47053 * 299.99523 * 1 2 3 32 32 H 1.08994 * 109.46821 * 239.99933 * 2 1 3 33 33 H 1.08997 * 109.47052 * 120.00160 * 2 1 3 34 34 H 1.09002 * 109.47375 * 60.00648 * 3 2 1 35 35 H 1.08997 * 109.47434 * 299.99926 * 3 2 1 36 36 H 1.09003 * 109.47053 * 60.00477 * 4 3 2 37 37 H 1.08996 * 109.47529 * 299.99931 * 4 3 2 38 38 H 1.08999 * 109.47551 * 59.99906 * 5 4 3 39 39 H 1.09005 * 109.47157 * 299.99781 * 5 4 3 40 40 H 1.09001 * 109.47632 * 59.99592 * 6 5 4 41 41 H 1.09010 * 109.47171 * 299.99974 * 6 5 4 42 42 H 1.09002 * 109.87921 * 59.49924 * 13 12 10 43 43 H 1.08999 * 110.00665 * 298.41424 * 13 12 10 44 44 H 1.09002 * 109.47167 * 173.51980 * 16 14 13 45 45 H 1.08993 * 109.47850 * 293.52706 * 16 14 13 46 46 H 1.09000 * 109.46940 * 53.52692 * 16 14 13 47 47 H 0.97004 * 119.99469 * 335.00052 * 19 17 14 48 48 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.36543 * 85.31133 * 28 12 10 50 50 H 1.08998 * 110.37275 * 322.98806 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0026 7 6 6.1199 4.3276 -0.0039 8 1 5.6860 4.8671 0.8380 9 9 5.7488 4.9522 -1.1993 10 6 7.6219 4.3294 0.1188 11 8 8.2859 3.5658 -0.5497 12 7 8.2274 5.1797 0.9714 13 6 9.6774 5.2873 1.1890 14 6 9.9032 6.4065 2.2272 15 1 10.0077 5.9911 3.2295 16 6 11.1289 7.2456 1.8607 17 6 8.6064 7.2510 2.1155 18 1 8.6683 7.9539 1.2846 19 7 8.3253 7.9504 3.3716 20 6 7.5798 9.0990 3.3637 21 1 7.1988 9.4891 2.4315 22 6 7.3131 9.7614 4.5541 23 7 6.5969 10.8658 4.5464 24 14 7.9775 9.0902 6.1657 25 1 6.9869 8.1564 6.7589 26 1 9.2501 8.3675 5.9139 27 1 8.2237 10.2132 7.1057 28 6 7.5454 6.1568 1.8394 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9329 0.9288 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 3.7170 3.3991 0.8887 39 1 3.7162 3.3985 -0.8913 40 1 5.9726 2.3711 -0.8927 41 1 5.9740 2.3713 0.8873 42 1 10.1746 5.5436 0.2535 43 1 10.0684 4.3438 1.5699 44 1 11.2030 8.0960 2.5386 45 1 12.0268 6.6337 1.9459 46 1 11.0300 7.6050 0.8364 47 1 8.6673 7.5998 4.2089 48 1 6.4108 11.3289 5.3782 49 1 7.2361 5.6847 2.7720 50 1 6.6842 6.5844 1.3260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216392770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:43 Heat of formation + Delta-G solvation = -105.456147 kcal Electronic energy + Delta-G solvation = -26554.685020 eV Core-core repulsion = 22723.286389 eV Total energy + Delta-G solvation = -3831.398631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.87153 -39.96271 -37.83654 -36.84955 -34.32586 -34.19895 -32.70807 -31.17900 -30.62136 -28.06803 -27.59088 -25.83740 -23.96934 -23.20826 -21.52160 -21.28325 -21.14663 -20.24236 -19.32622 -17.75374 -17.48623 -16.68852 -16.34264 -16.01575 -15.54562 -15.29558 -14.55955 -14.44911 -14.18688 -14.09328 -13.79706 -13.44320 -13.39155 -13.31035 -13.09913 -12.92724 -12.74689 -12.64362 -12.33210 -12.07082 -11.93494 -11.87678 -11.64155 -11.48707 -11.35100 -11.20537 -11.11479 -10.95970 -10.86336 -10.75446 -10.71508 -10.64964 -10.42646 -10.11158 -9.75785 -9.68666 -9.12165 -8.57773 -7.47742 -5.90915 -3.29806 2.43411 2.85918 3.27172 3.29583 3.36622 4.16662 4.28846 4.45750 4.51787 4.59069 4.64989 4.75184 4.79253 4.80968 4.91037 5.00443 5.02021 5.09950 5.22149 5.32238 5.35522 5.44037 5.44691 5.54946 5.56262 5.57567 5.62234 5.63794 5.68514 5.70337 5.77276 5.77378 5.84353 5.90184 5.99045 6.01035 6.03923 6.11685 6.15545 6.16685 6.24198 6.29536 6.43054 6.64758 7.49217 7.82412 8.03087 8.27312 9.03311 9.75229 9.92867 11.26489 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.002886 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.066782 B = 9698.467745 C =11311.254017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.134 4.134 7 C 0.084 3.916 8 H 0.103 0.897 9 F -0.190 7.190 10 C 0.506 3.494 11 O -0.535 6.535 12 N -0.605 5.605 13 C 0.115 3.885 14 C -0.118 4.118 15 H 0.083 0.917 16 C -0.136 4.136 17 C 0.183 3.817 18 H 0.079 0.921 19 N -0.733 5.733 20 C -0.255 4.255 21 H 0.093 0.907 22 C 0.011 3.989 23 N -0.927 5.927 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.276 1.276 27 H -0.290 1.290 28 C 0.065 3.935 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.365 0.635 48 H 0.262 0.738 49 H 0.073 0.927 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 -18.569 -7.267 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.172 4.172 7 C 0.044 3.956 8 H 0.121 0.879 9 F -0.171 7.171 10 C 0.292 3.708 11 O -0.412 6.412 12 N -0.339 5.339 13 C -0.008 4.008 14 C -0.138 4.138 15 H 0.101 0.899 16 C -0.193 4.193 17 C 0.071 3.929 18 H 0.097 0.903 19 N -0.374 5.374 20 C -0.385 4.385 21 H 0.111 0.889 22 C -0.186 4.186 23 N -0.573 5.573 24 Si 0.713 3.287 25 H -0.210 1.210 26 H -0.202 1.202 27 H -0.216 1.216 28 C -0.061 4.061 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.198 0.802 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.279 -18.750 -7.741 20.548 hybrid contribution 0.313 -0.271 1.274 1.339 sum -2.966 -19.021 -6.467 20.308 Atomic orbital electron populations 1.21786 0.95986 1.01470 1.01871 1.21539 0.95795 0.97064 1.01924 1.21634 0.95331 0.96670 1.02278 1.21576 0.95400 0.96386 1.02206 1.21616 0.93783 0.97518 1.03023 1.22044 0.96717 0.93588 1.04816 1.21626 0.91967 0.96117 0.85846 0.87895 1.92871 1.91984 1.84013 1.48210 1.20620 0.90153 0.80344 0.79724 1.90693 1.66280 1.39890 1.44321 1.48580 1.08476 1.36570 1.40256 1.22023 0.80682 0.98858 0.99211 1.22568 0.97241 0.95427 0.98544 0.89902 1.21676 0.95830 0.99845 1.01975 1.21321 0.89450 0.91117 0.91005 0.90276 1.42641 1.63615 1.28398 1.02706 1.19066 1.24881 0.98971 0.95554 0.88938 1.24686 0.99581 0.96949 0.97347 1.69701 1.42589 1.18407 1.26647 0.86586 0.78874 0.78303 0.84945 1.20961 1.20197 1.21591 1.23593 0.98611 0.90394 0.93483 0.92756 0.92926 0.92725 0.92131 0.92113 0.91870 0.91914 0.91874 0.91914 0.91399 0.91111 0.89582 0.89933 0.91212 0.91670 0.91318 0.93045 0.92523 0.80198 0.92831 0.90877 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 5 C -0.12 -1.12 5.13 -26.73 -0.14 -1.26 16 6 C -0.13 -1.45 4.69 -26.73 -0.13 -1.57 16 7 C 0.08 1.09 3.42 -27.88 -0.10 1.00 16 8 H 0.10 1.20 6.49 -51.93 -0.34 0.87 16 9 F -0.19 -2.82 16.74 2.25 0.04 -2.78 16 10 C 0.51 7.85 7.19 -10.98 -0.08 7.77 16 11 O -0.53 -9.72 16.93 5.56 0.09 -9.63 16 12 N -0.61 -9.04 3.33 -170.53 -0.57 -9.61 16 13 C 0.11 1.59 6.46 -3.07 -0.02 1.57 16 14 C -0.12 -1.66 3.20 -88.79 -0.28 -1.94 16 15 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 16 C -0.14 -1.75 9.16 37.15 0.34 -1.41 16 17 C 0.18 3.14 3.16 -65.79 -0.21 2.93 16 18 H 0.08 1.44 8.00 -51.93 -0.42 1.03 16 19 N -0.73 -15.44 5.05 -51.36 -0.26 -15.70 16 20 C -0.26 -6.60 10.44 -15.06 -0.16 -6.76 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 22 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 23 N -0.93 -27.66 13.97 55.49 0.78 -26.88 16 24 Si 0.88 20.64 27.74 -169.99 -4.71 15.92 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.06 1.00 5.95 -2.54 -0.02 0.99 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.69 7.93 -51.93 -0.41 0.27 16 40 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 41 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 47 H 0.36 7.56 5.62 -40.82 -0.23 7.33 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.08 1.20 7.25 -51.93 -0.38 0.82 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -30.25 400.74 -8.90 -39.15 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -9.36 Total: 5.75 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.95 Total: -2.27 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.05 Total: -52.19 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.71 Total: 15.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.25 -8.90 -39.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216392770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.308 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds