Wall clock time and date at job start Tue Mar 31 2020 11:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46830 * 2 1 4 4 C 1.53002 * 109.46830 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47055 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47346 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47346 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46982 * 55.00221 * 7 6 5 9 9 F 1.39894 * 109.47038 * 294.99654 * 7 6 5 10 10 C 1.50704 * 109.47109 * 174.99613 * 7 6 5 11 11 O 1.21283 * 119.99962 * 45.00006 * 10 7 6 12 12 N 1.34777 * 120.00337 * 224.99941 * 10 7 6 13 13 C 1.47019 * 125.65383 * 180.02562 * 12 10 7 14 14 C 1.54320 * 107.27366 * 178.91810 * 13 12 10 15 15 H 1.09000 * 110.86807 * 96.23967 * 14 13 12 16 16 C 1.52991 * 110.72031 * 219.44021 * 14 13 12 17 17 C 1.55156 * 102.94440 * 337.81011 * 14 13 12 18 18 H 1.09005 * 111.00043 * 277.39069 * 17 14 13 19 19 N 1.46499 * 111.00686 * 153.57453 * 17 14 13 20 20 C 1.36935 * 119.99938 * 154.99984 * 19 17 14 21 21 H 1.07999 * 120.00083 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99632 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 0.27829 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71949 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72145 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72253 * 24 22 20 28 28 C 1.47426 * 125.64363 * 359.97438 * 12 10 7 29 29 H 1.08996 * 109.47529 * 60.00069 * 1 2 3 30 30 H 1.09002 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47053 * 299.99523 * 1 2 3 32 32 H 1.08994 * 109.46821 * 239.99933 * 2 1 3 33 33 H 1.08997 * 109.47052 * 120.00160 * 2 1 3 34 34 H 1.09002 * 109.47375 * 60.00648 * 3 2 1 35 35 H 1.08997 * 109.47434 * 299.99926 * 3 2 1 36 36 H 1.09003 * 109.47053 * 60.00477 * 4 3 2 37 37 H 1.08996 * 109.47529 * 299.99931 * 4 3 2 38 38 H 1.08999 * 109.47551 * 59.99906 * 5 4 3 39 39 H 1.09005 * 109.47157 * 299.99781 * 5 4 3 40 40 H 1.09001 * 109.47632 * 59.99592 * 6 5 4 41 41 H 1.09010 * 109.47171 * 299.99974 * 6 5 4 42 42 H 1.09002 * 109.87921 * 59.49924 * 13 12 10 43 43 H 1.08999 * 110.00665 * 298.41424 * 13 12 10 44 44 H 1.09002 * 109.47167 * 173.51980 * 16 14 13 45 45 H 1.08993 * 109.47850 * 293.52706 * 16 14 13 46 46 H 1.09000 * 109.46940 * 53.52692 * 16 14 13 47 47 H 0.97004 * 119.99469 * 335.00052 * 19 17 14 48 48 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.36543 * 85.31133 * 28 12 10 50 50 H 1.08998 * 110.37275 * 322.98806 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0026 7 6 6.1199 4.3276 -0.0039 8 1 5.6860 4.8671 0.8380 9 9 5.7488 4.9522 -1.1993 10 6 7.6219 4.3294 0.1188 11 8 8.2859 3.5658 -0.5497 12 7 8.2274 5.1797 0.9714 13 6 9.6774 5.2873 1.1890 14 6 9.9032 6.4065 2.2272 15 1 10.0077 5.9911 3.2295 16 6 11.1289 7.2456 1.8607 17 6 8.6064 7.2510 2.1155 18 1 8.6683 7.9539 1.2846 19 7 8.3253 7.9504 3.3716 20 6 7.5798 9.0990 3.3637 21 1 7.1988 9.4891 2.4315 22 6 7.3131 9.7614 4.5541 23 7 6.5969 10.8658 4.5464 24 14 7.9775 9.0902 6.1657 25 1 6.9869 8.1564 6.7589 26 1 9.2501 8.3675 5.9139 27 1 8.2237 10.2132 7.1057 28 6 7.5454 6.1568 1.8394 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9329 0.9288 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 3.7170 3.3991 0.8887 39 1 3.7162 3.3985 -0.8913 40 1 5.9726 2.3711 -0.8927 41 1 5.9740 2.3713 0.8873 42 1 10.1746 5.5436 0.2535 43 1 10.0684 4.3438 1.5699 44 1 11.2030 8.0960 2.5386 45 1 12.0268 6.6337 1.9459 46 1 11.0300 7.6050 0.8364 47 1 8.6673 7.5998 4.2089 48 1 6.4108 11.3289 5.3782 49 1 7.2361 5.6847 2.7720 50 1 6.6842 6.5844 1.3260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216392770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:42 Heat of formation + Delta-G solvation = -121.559062 kcal Electronic energy + Delta-G solvation = -26555.383295 eV Core-core repulsion = 22723.286389 eV Total energy + Delta-G solvation = -3832.096906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.00418 -41.21832 -39.14163 -37.53340 -36.02396 -34.95598 -34.07233 -32.94102 -31.43310 -29.55299 -28.52145 -26.77232 -25.64924 -24.12515 -22.88896 -22.00854 -21.84651 -21.57785 -20.51155 -19.55700 -18.72041 -17.77590 -17.55535 -16.94348 -16.74416 -16.35250 -16.17073 -15.47771 -15.33685 -15.11451 -14.83323 -14.76253 -14.57252 -14.50293 -14.21979 -14.16041 -13.85484 -13.56615 -13.38480 -13.21079 -13.12378 -12.99514 -12.93621 -12.66904 -12.31741 -12.27132 -12.15304 -12.01954 -11.93155 -11.81058 -11.80503 -11.60757 -11.46362 -11.44928 -11.33822 -11.01916 -10.84784 -9.85305 -9.34864 -8.00415 -5.36647 1.20147 1.42354 1.45064 1.52414 1.68786 2.50736 2.99282 3.28442 3.37252 3.52593 3.58308 3.66376 3.77449 3.80176 3.97209 4.03296 4.07116 4.16796 4.28902 4.31697 4.35856 4.42009 4.52158 4.57521 4.61833 4.64361 4.77422 4.80982 4.85102 4.88201 4.93035 4.95267 5.02888 5.03825 5.08968 5.10392 5.14226 5.23185 5.26425 5.27986 5.38923 5.43109 5.48596 5.53615 5.78487 6.21889 6.25789 6.80122 7.07728 7.80204 8.00403 9.20371 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.002886 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.066782 B = 9698.467745 C =11311.254017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.127 4.127 7 C 0.082 3.918 8 H 0.118 0.882 9 F -0.202 7.202 10 C 0.503 3.497 11 O -0.563 6.563 12 N -0.604 5.604 13 C 0.114 3.886 14 C -0.104 4.104 15 H 0.095 0.905 16 C -0.134 4.134 17 C 0.173 3.827 18 H 0.063 0.937 19 N -0.732 5.732 20 C -0.232 4.232 21 H 0.059 0.941 22 C -0.059 4.059 23 N -0.982 5.982 24 Si 0.952 3.048 25 H -0.277 1.277 26 H -0.246 1.246 27 H -0.302 1.302 28 C 0.075 3.925 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.371 0.629 48 H 0.258 0.742 49 H 0.084 0.916 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -20.860 -6.413 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.165 4.165 7 C 0.043 3.957 8 H 0.136 0.864 9 F -0.183 7.183 10 C 0.290 3.710 11 O -0.442 6.442 12 N -0.336 5.336 13 C -0.008 4.008 14 C -0.124 4.124 15 H 0.113 0.887 16 C -0.191 4.191 17 C 0.063 3.937 18 H 0.081 0.919 19 N -0.374 5.374 20 C -0.363 4.363 21 H 0.077 0.923 22 C -0.250 4.250 23 N -0.631 5.631 24 Si 0.779 3.221 25 H -0.204 1.204 26 H -0.170 1.170 27 H -0.229 1.229 28 C -0.050 4.050 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.205 0.795 48 H 0.066 0.934 49 H 0.102 0.898 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.381 -21.093 -6.919 22.327 hybrid contribution 0.060 0.448 0.870 0.981 sum -2.321 -20.646 -6.049 21.638 Atomic orbital electron populations 1.21793 0.95686 1.01874 1.01832 1.21537 0.96082 0.96595 1.02086 1.21618 0.94940 0.97119 1.02119 1.21545 0.95700 0.95509 1.02457 1.21591 0.92558 0.98393 1.02977 1.22027 0.97690 0.91945 1.04834 1.21822 0.90469 0.97692 0.85739 0.86423 1.92847 1.91941 1.84391 1.49089 1.21024 0.91058 0.79790 0.79102 1.90679 1.67138 1.41049 1.45324 1.48604 1.09014 1.36076 1.39953 1.22109 0.80073 0.99376 0.99221 1.22492 0.95745 0.94795 0.99379 0.88682 1.21666 0.96415 0.99533 1.01496 1.21455 0.91987 0.91387 0.88883 0.91904 1.42503 1.63155 1.27381 1.04380 1.18976 1.23562 0.99720 0.94053 0.92314 1.25479 1.00755 0.97518 1.01292 1.69888 1.45304 1.20609 1.27329 0.85469 0.79473 0.77399 0.79776 1.20356 1.17027 1.22927 1.23335 0.97710 0.89963 0.94037 0.92802 0.92329 0.92778 0.92029 0.91892 0.91918 0.92204 0.91942 0.91345 0.90780 0.91834 0.90621 0.88830 0.91135 0.90167 0.92834 0.90430 0.92591 0.79508 0.93358 0.89783 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.13 -1.56 5.93 30.59 0.18 -1.38 16 3 C -0.12 -1.65 5.21 30.59 0.16 -1.49 16 4 C -0.11 -1.66 5.21 30.60 0.16 -1.51 16 5 C -0.12 -2.00 5.13 30.59 0.16 -1.84 16 6 C -0.13 -2.57 4.69 30.59 0.14 -2.43 16 7 C 0.08 2.03 3.42 29.85 0.10 2.13 16 8 H 0.12 2.56 6.49 -2.39 -0.02 2.54 16 9 F -0.20 -5.88 16.74 44.97 0.75 -5.12 16 10 C 0.50 14.92 7.19 87.66 0.63 15.55 16 11 O -0.56 -19.81 16.93 -3.04 -0.05 -19.86 16 12 N -0.60 -16.87 3.33 -811.83 -2.70 -19.57 16 13 C 0.11 2.87 6.46 86.73 0.56 3.43 16 14 C -0.10 -2.66 3.20 -9.61 -0.03 -2.69 16 15 H 0.09 2.25 8.00 -2.39 -0.02 2.24 16 16 C -0.13 -3.13 9.16 71.98 0.66 -2.47 16 17 C 0.17 5.70 3.16 46.38 0.15 5.85 16 18 H 0.06 2.28 8.00 -2.38 -0.02 2.26 16 19 N -0.73 -29.78 5.05 -316.40 -1.60 -31.38 16 20 C -0.23 -12.08 10.44 84.03 0.88 -11.20 16 21 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 22 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 23 N -0.98 -60.09 13.97 21.65 0.30 -59.79 16 24 Si 0.95 42.05 27.74 68.60 1.90 43.95 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.25 -9.52 6.52 99.48 0.65 -8.87 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 C 0.07 2.18 5.95 86.85 0.52 2.70 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.18 7.93 -2.38 -0.02 1.16 16 40 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 41 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.07 1.79 7.76 -2.39 -0.02 1.77 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.05 1.31 8.06 -2.39 -0.02 1.29 16 47 H 0.37 14.30 5.62 -92.71 -0.52 13.78 16 48 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 49 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 50 H 0.07 2.20 7.25 -2.39 -0.02 2.18 16 Total: -1.00 -65.53 400.74 4.36 -61.16 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.31 Total: 29.80 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.44 Total: 0.81 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.00 Total: -110.74 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.75 Total: -5.12 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.90 Total: 43.95 kcal Total: -65.53 4.36 -61.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216392770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.395 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds