Wall clock time and date at job start Tue Mar 31 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 C 1.52993 * 109.47300 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47262 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47510 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47510 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47152 * 305.00235 * 7 6 5 9 9 F 1.39904 * 109.47152 * 65.00232 * 7 6 5 10 10 C 1.50702 * 109.47201 * 184.99802 * 7 6 5 11 11 O 1.21280 * 120.00299 * 315.00556 * 10 7 6 12 12 N 1.34783 * 119.99463 * 134.99996 * 10 7 6 13 13 C 1.47428 * 125.64363 * 180.02562 * 12 10 7 14 14 C 1.54905 * 104.83005 * 204.09303 * 13 12 10 15 15 H 1.09004 * 111.00717 * 81.06589 * 14 13 12 16 16 C 1.52998 * 111.00757 * 204.91596 * 14 13 12 17 17 C 1.55162 * 101.58494 * 322.99378 * 14 13 12 18 18 H 1.08995 * 110.86872 * 277.06330 * 17 14 13 19 19 N 1.46499 * 110.72136 * 153.86398 * 17 14 13 20 20 C 1.36931 * 120.00122 * 160.02424 * 19 17 14 21 21 H 1.08002 * 120.00098 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99535 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 180.27849 * 22 20 19 25 25 H 1.48497 * 109.47173 * 179.72427 * 24 22 20 26 26 H 1.48506 * 109.46866 * 299.71963 * 24 22 20 27 27 H 1.48501 * 109.47438 * 59.72083 * 24 22 20 28 28 C 1.47017 * 125.65073 * 359.97438 * 12 10 7 29 29 H 1.08999 * 109.46380 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47053 * 299.99952 * 1 2 3 31 31 H 1.08998 * 109.46927 * 60.00352 * 1 2 3 32 32 H 1.08997 * 109.47380 * 240.00282 * 2 1 3 33 33 H 1.08998 * 109.46927 * 119.99648 * 2 1 3 34 34 H 1.08998 * 109.47056 * 59.99444 * 3 2 1 35 35 H 1.09004 * 109.46898 * 300.00337 * 3 2 1 36 36 H 1.09006 * 109.47163 * 59.99611 * 4 3 2 37 37 H 1.08998 * 109.46848 * 299.99732 * 4 3 2 38 38 H 1.09006 * 109.47134 * 59.99857 * 5 4 3 39 39 H 1.08992 * 109.47481 * 300.00427 * 5 4 3 40 40 H 1.09006 * 109.46822 * 59.99931 * 6 5 4 41 41 H 1.09007 * 109.47040 * 300.00424 * 6 5 4 42 42 H 1.09001 * 110.36863 * 322.93452 * 13 12 10 43 43 H 1.09000 * 110.36244 * 85.14936 * 13 12 10 44 44 H 1.09000 * 109.47369 * 172.19661 * 16 14 13 45 45 H 1.08999 * 109.47009 * 292.20242 * 16 14 13 46 46 H 1.09002 * 109.46507 * 52.19707 * 16 14 13 47 47 H 0.97001 * 119.99790 * 340.01941 * 19 17 14 48 48 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.88283 * 59.55899 * 28 12 10 50 50 H 1.09004 * 110.01221 * 298.46326 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8852 0.0013 7 6 6.1199 4.3276 0.0000 8 1 5.6860 4.8657 -0.8428 9 9 5.7488 4.9545 1.1944 10 6 7.6219 4.3293 -0.1225 11 8 8.2859 3.5669 0.5473 12 7 8.2273 5.1782 -0.9767 13 6 9.6813 5.2849 -1.1957 14 6 9.8971 6.7220 -1.7322 15 1 9.9133 7.4452 -0.9168 16 6 11.1770 6.8099 -2.5658 17 6 8.6401 6.9146 -2.6213 18 1 8.7910 6.4756 -3.6074 19 7 8.2983 8.3346 -2.7350 20 6 7.5080 8.7682 -3.7658 21 1 7.1363 8.0633 -4.4947 22 6 7.1845 10.1138 -3.8739 23 7 7.6371 10.9728 -2.9853 24 14 6.1000 10.7040 -5.2756 25 1 5.8998 12.1711 -5.1626 26 1 6.7536 10.3921 -6.5722 27 1 4.7848 10.0181 -5.2066 28 6 7.5471 6.1502 -1.8449 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8909 38 1 3.7162 3.3994 0.8896 39 1 3.7170 3.3984 -0.8903 40 1 5.9740 2.3707 -0.8881 41 1 5.9726 2.3719 0.8920 42 1 10.2176 5.1459 -0.2570 43 1 10.0090 4.5504 -1.9314 44 1 11.2333 7.7881 -3.0433 45 1 12.0427 6.6714 -1.9180 46 1 11.1670 6.0326 -3.3298 47 1 8.6318 8.9677 -2.0801 48 1 7.4108 11.9131 -3.0606 49 1 6.9674 6.8465 -1.2390 50 1 6.8906 5.6311 -2.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216392771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:45 Heat of formation + Delta-G solvation = -109.600023 kcal Electronic energy + Delta-G solvation = -26528.782661 eV Core-core repulsion = 22697.204338 eV Total energy + Delta-G solvation = -3831.578323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.81113 -39.86084 -37.71600 -36.83179 -34.17711 -34.16428 -32.63756 -30.86647 -30.55122 -27.70443 -27.45876 -25.77651 -24.11230 -23.22241 -21.61071 -21.27030 -21.12590 -20.03849 -19.20967 -17.48551 -17.18801 -16.80210 -16.12867 -15.88549 -15.53525 -15.22558 -14.51744 -14.43770 -14.23147 -14.11018 -13.62971 -13.49639 -13.34028 -13.21168 -13.00051 -12.78734 -12.66950 -12.46212 -12.32902 -12.06756 -11.92268 -11.63311 -11.61327 -11.30127 -11.19972 -11.15600 -11.01634 -10.93713 -10.81565 -10.70311 -10.67333 -10.62717 -10.33657 -10.03397 -9.82192 -9.63842 -9.05275 -8.47753 -7.15956 -5.89972 -3.21572 2.50087 2.95143 3.36164 3.41196 3.42363 4.23034 4.33739 4.47991 4.56634 4.61383 4.69201 4.78010 4.80710 4.91457 5.02808 5.05938 5.11831 5.15253 5.23855 5.37209 5.45645 5.49133 5.55302 5.56108 5.59485 5.64380 5.66762 5.71517 5.75437 5.78485 5.83549 5.85239 5.91944 5.92671 6.02285 6.11379 6.13386 6.17008 6.18048 6.26390 6.39976 6.43224 6.54691 6.79342 7.55922 7.60387 8.10088 8.27076 9.39088 9.92149 10.27053 11.31645 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.002940 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.959006 B = 9522.624635 C =11493.199212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.133 4.133 7 C 0.084 3.916 8 H 0.102 0.898 9 F -0.190 7.190 10 C 0.505 3.495 11 O -0.537 6.537 12 N -0.604 5.604 13 C 0.112 3.888 14 C -0.113 4.113 15 H 0.085 0.915 16 C -0.133 4.133 17 C 0.178 3.822 18 H 0.068 0.932 19 N -0.711 5.711 20 C -0.252 4.252 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.908 3.092 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.064 3.936 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.388 0.612 48 H 0.258 0.742 49 H 0.077 0.923 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 -18.171 4.186 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.172 4.172 7 C 0.045 3.955 8 H 0.120 0.880 9 F -0.171 7.171 10 C 0.291 3.709 11 O -0.415 6.415 12 N -0.337 5.337 13 C -0.010 4.010 14 C -0.133 4.133 15 H 0.103 0.897 16 C -0.191 4.191 17 C 0.066 3.934 18 H 0.086 0.914 19 N -0.350 5.350 20 C -0.383 4.383 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.575 5.575 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.062 4.062 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.222 0.778 48 H 0.068 0.932 49 H 0.095 0.905 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.365 -18.521 4.455 19.790 hybrid contribution -0.646 0.754 -0.480 1.103 sum -6.012 -17.767 3.975 19.173 Atomic orbital electron populations 1.21784 0.96002 1.01463 1.01856 1.21543 0.95777 0.97070 1.01933 1.21635 0.95363 0.96658 1.02255 1.21574 0.95364 0.96406 1.02216 1.21612 0.93854 0.97477 1.02986 1.22042 0.96647 0.93665 1.04803 1.21614 0.92105 0.95932 0.85854 0.88032 1.92871 1.91996 1.83945 1.48301 1.20610 0.90124 0.80429 0.79722 1.90685 1.66272 1.40031 1.44466 1.48623 1.08605 1.36547 1.39945 1.22326 0.80575 0.97261 1.00884 1.22632 0.96549 0.95060 0.99092 0.89690 1.21609 0.95461 1.02877 0.99150 1.21233 0.89535 0.87029 0.95606 0.91405 1.42358 1.59851 1.00932 1.31908 1.19175 1.23474 0.92057 1.03544 0.91008 1.24778 1.00762 0.96046 0.98771 1.69653 1.48924 1.02563 1.36337 0.86263 0.80395 0.77682 0.81773 1.21634 1.21137 1.21112 1.23514 0.98623 0.90785 0.93231 0.92924 0.92764 0.92741 0.92105 0.92121 0.91930 0.91897 0.91909 0.91860 0.91141 0.91448 0.89940 0.89589 0.90799 0.91344 0.91227 0.93100 0.92799 0.77790 0.93220 0.90455 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 4 C -0.12 -0.97 5.21 -26.74 -0.14 -1.11 16 5 C -0.12 -1.16 5.13 -26.73 -0.14 -1.29 16 6 C -0.13 -1.50 4.69 -26.73 -0.13 -1.62 16 7 C 0.08 1.16 3.54 -27.88 -0.10 1.06 16 8 H 0.10 1.26 6.73 -51.93 -0.35 0.91 16 9 F -0.19 -2.99 16.75 2.25 0.04 -2.95 16 10 C 0.51 8.23 7.19 -10.98 -0.08 8.16 16 11 O -0.54 -10.11 16.86 5.56 0.09 -10.02 16 12 N -0.60 -9.55 3.33 -170.52 -0.57 -10.11 16 13 C 0.11 1.63 6.37 -2.53 -0.02 1.62 16 14 C -0.11 -1.73 3.25 -88.47 -0.29 -2.02 16 15 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 16 C -0.13 -1.80 9.31 37.16 0.35 -1.45 16 17 C 0.18 3.18 3.06 -66.09 -0.20 2.98 16 18 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16 19 N -0.71 -16.19 5.18 -51.65 -0.27 -16.46 16 20 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -26.61 13.06 55.49 0.72 -25.89 16 24 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.06 1.06 5.65 -3.07 -0.02 1.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.04 8.05 -51.92 -0.42 0.62 16 42 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 43 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 47 H 0.39 9.56 7.71 -40.82 -0.31 9.25 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 50 H 0.06 0.94 7.91 -51.93 -0.41 0.53 16 LS Contribution 404.48 15.07 6.10 6.10 Total: -1.00 -29.42 404.48 -9.29 -38.71 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -9.45 Total: 6.65 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.93 Total: -2.22 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.11 Total: -52.46 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.42 -9.29 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216392771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.888 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds