Wall clock time and date at job start Tue Mar 31 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 C 1.52993 * 109.47300 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47262 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47510 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47510 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47152 * 305.00235 * 7 6 5 9 9 F 1.39904 * 109.47152 * 65.00232 * 7 6 5 10 10 C 1.50702 * 109.47201 * 184.99802 * 7 6 5 11 11 O 1.21280 * 120.00299 * 315.00556 * 10 7 6 12 12 N 1.34783 * 119.99463 * 134.99996 * 10 7 6 13 13 C 1.47428 * 125.64363 * 180.02562 * 12 10 7 14 14 C 1.54905 * 104.83005 * 204.09303 * 13 12 10 15 15 H 1.09004 * 111.00717 * 81.06589 * 14 13 12 16 16 C 1.52998 * 111.00757 * 204.91596 * 14 13 12 17 17 C 1.55162 * 101.58494 * 322.99378 * 14 13 12 18 18 H 1.08995 * 110.86872 * 277.06330 * 17 14 13 19 19 N 1.46499 * 110.72136 * 153.86398 * 17 14 13 20 20 C 1.36931 * 120.00122 * 160.02424 * 19 17 14 21 21 H 1.08002 * 120.00098 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99535 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 180.27849 * 22 20 19 25 25 H 1.48497 * 109.47173 * 179.72427 * 24 22 20 26 26 H 1.48506 * 109.46866 * 299.71963 * 24 22 20 27 27 H 1.48501 * 109.47438 * 59.72083 * 24 22 20 28 28 C 1.47017 * 125.65073 * 359.97438 * 12 10 7 29 29 H 1.08999 * 109.46380 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47053 * 299.99952 * 1 2 3 31 31 H 1.08998 * 109.46927 * 60.00352 * 1 2 3 32 32 H 1.08997 * 109.47380 * 240.00282 * 2 1 3 33 33 H 1.08998 * 109.46927 * 119.99648 * 2 1 3 34 34 H 1.08998 * 109.47056 * 59.99444 * 3 2 1 35 35 H 1.09004 * 109.46898 * 300.00337 * 3 2 1 36 36 H 1.09006 * 109.47163 * 59.99611 * 4 3 2 37 37 H 1.08998 * 109.46848 * 299.99732 * 4 3 2 38 38 H 1.09006 * 109.47134 * 59.99857 * 5 4 3 39 39 H 1.08992 * 109.47481 * 300.00427 * 5 4 3 40 40 H 1.09006 * 109.46822 * 59.99931 * 6 5 4 41 41 H 1.09007 * 109.47040 * 300.00424 * 6 5 4 42 42 H 1.09001 * 110.36863 * 322.93452 * 13 12 10 43 43 H 1.09000 * 110.36244 * 85.14936 * 13 12 10 44 44 H 1.09000 * 109.47369 * 172.19661 * 16 14 13 45 45 H 1.08999 * 109.47009 * 292.20242 * 16 14 13 46 46 H 1.09002 * 109.46507 * 52.19707 * 16 14 13 47 47 H 0.97001 * 119.99790 * 340.01941 * 19 17 14 48 48 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.88283 * 59.55899 * 28 12 10 50 50 H 1.09004 * 110.01221 * 298.46326 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8852 0.0013 7 6 6.1199 4.3276 0.0000 8 1 5.6860 4.8657 -0.8428 9 9 5.7488 4.9545 1.1944 10 6 7.6219 4.3293 -0.1225 11 8 8.2859 3.5669 0.5473 12 7 8.2273 5.1782 -0.9767 13 6 9.6813 5.2849 -1.1957 14 6 9.8971 6.7220 -1.7322 15 1 9.9133 7.4452 -0.9168 16 6 11.1770 6.8099 -2.5658 17 6 8.6401 6.9146 -2.6213 18 1 8.7910 6.4756 -3.6074 19 7 8.2983 8.3346 -2.7350 20 6 7.5080 8.7682 -3.7658 21 1 7.1363 8.0633 -4.4947 22 6 7.1845 10.1138 -3.8739 23 7 7.6371 10.9728 -2.9853 24 14 6.1000 10.7040 -5.2756 25 1 5.8998 12.1711 -5.1626 26 1 6.7536 10.3921 -6.5722 27 1 4.7848 10.0181 -5.2066 28 6 7.5471 6.1502 -1.8449 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8909 38 1 3.7162 3.3994 0.8896 39 1 3.7170 3.3984 -0.8903 40 1 5.9740 2.3707 -0.8881 41 1 5.9726 2.3719 0.8920 42 1 10.2176 5.1459 -0.2570 43 1 10.0090 4.5504 -1.9314 44 1 11.2333 7.7881 -3.0433 45 1 12.0427 6.6714 -1.9180 46 1 11.1670 6.0326 -3.3298 47 1 8.6318 8.9677 -2.0801 48 1 7.4108 11.9131 -3.0606 49 1 6.9674 6.8465 -1.2390 50 1 6.8906 5.6311 -2.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216392771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:44 Heat of formation + Delta-G solvation = -124.476495 kcal Electronic energy + Delta-G solvation = -26529.427754 eV Core-core repulsion = 22697.204338 eV Total energy + Delta-G solvation = -3832.223416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.00523 -41.18137 -39.07620 -37.53057 -35.89325 -34.95349 -34.02223 -32.54203 -31.42382 -29.19157 -28.49700 -26.75976 -25.88119 -24.14684 -22.94841 -22.00654 -21.82338 -21.40394 -20.45991 -19.07768 -18.69295 -18.00699 -17.15871 -17.03883 -16.72529 -16.41747 -16.04542 -15.51098 -15.34121 -15.24404 -14.90090 -14.73882 -14.56911 -14.28526 -14.14657 -13.92097 -13.69993 -13.55731 -13.40251 -13.11799 -13.02158 -12.87795 -12.79948 -12.65765 -12.31513 -12.27319 -12.21374 -12.03696 -11.99296 -11.80259 -11.68664 -11.60569 -11.47088 -11.39624 -11.33495 -10.99258 -10.81759 -9.79355 -9.06117 -7.92755 -5.22988 1.20624 1.52056 1.53433 1.59397 1.72103 2.57941 3.05576 3.37753 3.38044 3.60303 3.63120 3.75585 3.80736 3.85608 3.97739 4.07247 4.17075 4.20806 4.31517 4.32533 4.42189 4.43246 4.57690 4.59338 4.62341 4.63902 4.77540 4.85615 4.86023 4.88455 4.93461 4.95662 5.05786 5.09515 5.11267 5.13952 5.15667 5.23612 5.26656 5.32224 5.39156 5.47609 5.48877 5.53894 5.56665 6.26086 6.29674 6.81091 7.35186 8.06444 8.30032 9.29897 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.002940 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.959006 B = 9522.624635 C =11493.199212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.082 3.918 8 H 0.117 0.883 9 F -0.203 7.203 10 C 0.502 3.498 11 O -0.564 6.564 12 N -0.604 5.604 13 C 0.114 3.886 14 C -0.105 4.105 15 H 0.068 0.932 16 C -0.127 4.127 17 C 0.172 3.828 18 H 0.077 0.923 19 N -0.722 5.722 20 C -0.240 4.240 21 H 0.084 0.916 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.969 3.031 25 H -0.302 1.302 26 H -0.277 1.277 27 H -0.276 1.276 28 C 0.076 3.924 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.056 0.944 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 -20.100 3.019 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.043 3.957 8 H 0.134 0.866 9 F -0.184 7.184 10 C 0.289 3.711 11 O -0.444 6.444 12 N -0.336 5.336 13 C -0.008 4.008 14 C -0.125 4.125 15 H 0.087 0.913 16 C -0.185 4.185 17 C 0.062 3.938 18 H 0.095 0.905 19 N -0.361 5.361 20 C -0.372 4.372 21 H 0.102 0.898 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.798 3.202 25 H -0.229 1.229 26 H -0.203 1.203 27 H -0.202 1.202 28 C -0.050 4.050 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.207 0.793 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.830 -20.507 3.273 21.569 hybrid contribution -0.438 1.277 -0.080 1.353 sum -6.268 -19.229 3.192 20.476 Atomic orbital electron populations 1.21791 0.95681 1.01875 1.01827 1.21540 0.96082 0.96579 1.02099 1.21618 0.94918 0.97133 1.02113 1.21542 0.95711 0.95447 1.02491 1.21588 0.92516 0.98436 1.02953 1.22028 0.97716 0.91811 1.04878 1.21825 0.90492 0.97669 0.85692 0.86552 1.92844 1.91953 1.84375 1.49264 1.21046 0.91111 0.79860 0.79074 1.90670 1.67146 1.41162 1.45402 1.48665 1.09137 1.36076 1.39733 1.22404 0.79979 0.96999 1.01448 1.22541 0.96387 0.95224 0.98320 0.91350 1.21564 0.95167 1.02221 0.99529 1.21442 0.91050 0.84589 0.96742 0.90501 1.42492 1.59677 1.02842 1.31073 1.19594 1.21981 0.92103 1.03514 0.89829 1.25529 1.02972 0.96605 1.01274 1.69812 1.51188 1.02307 1.38495 0.85283 0.79128 0.76351 0.79405 1.22892 1.20334 1.20237 1.23205 0.98000 0.90655 0.93109 0.92323 0.92850 0.92731 0.91824 0.92078 0.92289 0.91842 0.91231 0.91998 0.91982 0.90690 0.88668 0.90685 0.90870 0.89142 0.93349 0.91063 0.91095 0.79318 0.94130 0.92515 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.13 -1.55 5.93 30.60 0.18 -1.37 16 3 C -0.12 -1.65 5.21 30.59 0.16 -1.49 16 4 C -0.11 -1.68 5.21 30.59 0.16 -1.52 16 5 C -0.12 -2.04 5.13 30.59 0.16 -1.89 16 6 C -0.13 -2.64 4.69 30.59 0.14 -2.50 16 7 C 0.08 2.16 3.54 29.85 0.11 2.26 16 8 H 0.12 2.68 6.73 -2.39 -0.02 2.66 16 9 F -0.20 -6.30 16.75 44.97 0.75 -5.55 16 10 C 0.50 15.73 7.19 87.66 0.63 16.36 16 11 O -0.56 -20.71 16.86 -3.03 -0.05 -20.76 16 12 N -0.60 -18.09 3.33 -811.79 -2.70 -20.79 16 13 C 0.11 3.08 6.37 86.85 0.55 3.64 16 14 C -0.10 -3.07 3.25 -9.40 -0.03 -3.10 16 15 H 0.07 2.24 8.00 -2.38 -0.02 2.22 16 16 C -0.13 -3.19 9.31 71.98 0.67 -2.52 16 17 C 0.17 5.90 3.06 46.18 0.14 6.04 16 18 H 0.08 2.54 8.02 -2.39 -0.02 2.52 16 19 N -0.72 -32.76 5.18 -317.33 -1.64 -34.40 16 20 C -0.24 -12.09 9.98 84.03 0.84 -11.25 16 21 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.97 -56.62 13.06 21.65 0.28 -56.34 16 24 Si 0.97 43.54 29.55 68.60 2.03 45.57 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 28 C 0.08 2.38 5.65 86.73 0.49 2.87 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.19 7.94 -2.38 -0.02 1.17 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.07 1.75 8.05 -2.38 -0.02 1.73 16 42 H 0.07 2.03 8.04 -2.39 -0.02 2.02 16 43 H 0.09 2.10 7.99 -2.39 -0.02 2.08 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 47 H 0.37 18.84 7.71 -92.71 -0.72 18.12 16 48 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 49 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 50 H 0.08 2.28 7.91 -2.38 -0.02 2.26 16 Total: -1.00 -62.79 404.48 4.22 -58.57 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.17 Total: 32.62 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.38 Total: 1.08 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.06 Total: -111.53 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.75 Total: -5.55 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -62.79 4.22 -58.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216392771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.911 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds