Wall clock time and date at job start Tue Mar 31 2020 10:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47110 * 2 1 4 4 C 1.42900 * 113.99913 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46951 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47010 * 65.00040 * 5 4 3 7 7 C 1.42900 * 113.99775 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47451 * 30.00010 * 7 6 5 9 9 C 1.53002 * 109.46961 * 269.99834 * 7 6 5 10 10 C 1.50704 * 109.46976 * 150.00003 * 7 6 5 11 11 O 1.21278 * 119.99855 * 12.50549 * 10 7 6 12 12 N 1.34770 * 119.99907 * 192.50268 * 10 7 6 13 13 C 1.47426 * 125.64702 * 175.10754 * 12 10 7 14 14 C 1.54911 * 104.83174 * 204.09558 * 13 12 10 15 15 H 1.08997 * 111.00153 * 81.06793 * 14 13 12 16 16 C 1.53006 * 111.00498 * 204.92084 * 14 13 12 17 17 C 1.55157 * 101.58165 * 322.99310 * 14 13 12 18 18 H 1.08993 * 110.87139 * 277.06346 * 17 14 13 19 19 N 1.46503 * 110.71728 * 153.86742 * 17 14 13 20 20 C 1.36936 * 120.00198 * 160.02691 * 19 17 14 21 21 H 1.07998 * 119.99729 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00107 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00014 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99844 * 180.27382 * 22 20 19 25 25 H 1.48502 * 109.47033 * 179.72288 * 24 22 20 26 26 H 1.48504 * 109.47182 * 299.72399 * 24 22 20 27 27 H 1.48505 * 109.47344 * 59.72150 * 24 22 20 28 28 C 1.47024 * 125.64934 * 355.07340 * 12 10 7 29 29 H 1.08997 * 109.47179 * 299.99478 * 1 2 3 30 30 H 1.08999 * 109.47462 * 59.99639 * 1 2 3 31 31 H 1.09002 * 109.46645 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47175 * 240.00289 * 2 1 3 33 33 H 1.08999 * 109.47462 * 120.00361 * 2 1 3 34 34 H 1.09000 * 109.47356 * 59.99970 * 4 3 2 35 35 H 1.09005 * 109.47135 * 300.00084 * 4 3 2 36 36 H 1.08993 * 109.47014 * 304.99694 * 5 4 3 37 37 H 1.08997 * 109.46545 * 184.99969 * 5 4 3 38 38 H 1.08997 * 109.47311 * 64.75653 * 9 7 6 39 39 H 1.09006 * 109.46841 * 184.75316 * 9 7 6 40 40 H 1.09001 * 109.47315 * 304.75157 * 9 7 6 41 41 H 1.08994 * 110.36814 * 322.93652 * 13 12 10 42 42 H 1.09003 * 110.36519 * 85.15483 * 13 12 10 43 43 H 1.09002 * 109.47205 * 172.19812 * 16 14 13 44 44 H 1.09002 * 109.46626 * 292.19421 * 16 14 13 45 45 H 1.08994 * 109.47214 * 52.19717 * 16 14 13 46 46 H 0.97000 * 120.00044 * 340.01665 * 19 17 14 47 47 H 0.97002 * 119.99687 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.88580 * 59.55673 * 28 12 10 49 49 H 1.08997 * 110.01377 * 298.46245 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3986 3.5447 1.2217 7 6 3.7204 4.9332 1.3249 8 1 3.7324 5.3783 0.3300 9 6 5.0984 5.0907 1.9708 10 6 2.6858 5.6269 2.1731 11 8 1.8996 4.9737 2.8258 12 7 2.6342 6.9732 2.2063 13 6 1.6165 7.7770 2.9075 14 6 1.6079 9.1383 2.1681 15 1 1.0132 9.0839 1.2564 16 6 1.1039 10.2562 3.0832 17 6 3.1130 9.3242 1.8402 18 1 3.6479 9.7403 2.6938 19 7 3.2850 10.1737 0.6590 20 6 4.4830 10.7970 0.4325 21 1 5.3010 10.6627 1.1248 22 6 4.6461 11.6014 -0.6870 23 7 3.6494 11.7647 -1.5309 24 14 6.2829 12.4455 -1.0000 25 1 6.2004 13.2355 -2.2548 26 1 6.5983 13.3502 0.1347 27 1 7.3511 11.4220 -1.1287 28 6 3.5840 7.8836 1.5500 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8333 0.9767 -0.8908 35 1 3.8340 0.9764 0.8892 36 1 3.3492 3.4419 -0.8412 37 1 4.9081 3.0255 -0.0899 38 1 5.8576 4.6628 1.3161 39 1 5.3078 6.1490 2.1267 40 1 5.1116 4.5726 2.9297 41 1 0.6395 7.2995 2.8344 42 1 1.8944 7.9130 3.9527 43 1 1.2376 11.2185 2.5888 44 1 0.0463 10.1015 3.2971 45 1 1.6686 10.2451 4.0154 46 1 2.5502 10.2945 0.0374 47 1 3.7633 12.3271 -2.3130 48 1 3.5870 7.7041 0.4749 49 1 4.5852 7.7325 1.9536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216830747.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:20 Heat of formation + Delta-G solvation = -137.614212 kcal Electronic energy + Delta-G solvation = -27067.244153 eV Core-core repulsion = 23222.078253 eV Total energy + Delta-G solvation = -3845.165899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38483 -39.67265 -38.95739 -38.08917 -35.85154 -34.26157 -33.12259 -32.51182 -31.86161 -29.85247 -29.14130 -27.61428 -25.98561 -24.95890 -23.69362 -23.50344 -22.79701 -21.38642 -20.49696 -19.05128 -18.48656 -18.05150 -17.77830 -17.22167 -16.92844 -16.67188 -16.24834 -16.09356 -15.61102 -15.40737 -15.29849 -14.76799 -14.65176 -14.32529 -14.12916 -13.89436 -13.76967 -13.63006 -13.58429 -13.17101 -13.12327 -12.99852 -12.80250 -12.73731 -12.66988 -12.30090 -12.23609 -12.19169 -12.11333 -12.01704 -11.88513 -11.64748 -11.39662 -11.10622 -10.89355 -10.56106 -10.53134 -9.68292 -9.03678 -7.91211 -5.21114 1.47431 1.52894 1.54101 1.60062 1.69168 2.58539 2.73636 2.77159 3.34132 3.40393 3.71216 3.80547 3.85114 3.89505 3.97656 4.08049 4.14028 4.21021 4.22552 4.30349 4.32877 4.42535 4.45819 4.47125 4.49145 4.59429 4.63266 4.66127 4.72139 4.75665 4.86666 4.89139 4.90956 5.00773 5.09564 5.13052 5.20316 5.21925 5.23652 5.33356 5.49258 5.58436 6.02890 6.28764 6.31166 6.45136 7.06448 7.36973 8.08241 8.32455 9.31500 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002931 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.558646 B = 9549.319730 C =10478.809269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.416 6.416 4 C 0.063 3.937 5 C 0.051 3.949 6 O -0.378 6.378 7 C 0.077 3.923 8 H 0.093 0.907 9 C -0.165 4.165 10 C 0.523 3.477 11 O -0.572 6.572 12 N -0.610 5.610 13 C 0.117 3.883 14 C -0.103 4.103 15 H 0.070 0.930 16 C -0.128 4.128 17 C 0.172 3.828 18 H 0.073 0.927 19 N -0.722 5.722 20 C -0.239 4.239 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.968 5.968 24 Si 0.968 3.032 25 H -0.302 1.302 26 H -0.279 1.279 27 H -0.276 1.276 28 C 0.080 3.920 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.375 0.625 47 H 0.250 0.750 48 H 0.060 0.940 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -18.980 4.971 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.013 4.013 5 C -0.025 4.025 6 O -0.297 6.297 7 C 0.016 3.984 8 H 0.111 0.889 9 C -0.222 4.222 10 C 0.312 3.688 11 O -0.452 6.452 12 N -0.345 5.345 13 C -0.005 4.005 14 C -0.123 4.123 15 H 0.089 0.911 16 C -0.185 4.185 17 C 0.061 3.939 18 H 0.091 0.909 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.797 3.203 25 H -0.229 1.229 26 H -0.205 1.205 27 H -0.202 1.202 28 C -0.045 4.045 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.207 0.793 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.203 -19.287 5.467 20.048 hybrid contribution 0.616 0.642 -0.973 1.318 sum 0.819 -18.645 4.494 19.196 Atomic orbital electron populations 1.21776 0.93681 1.03307 1.02171 1.22645 0.95996 0.82902 1.01010 1.87981 1.21992 1.28095 1.95609 1.22667 0.81414 0.94971 1.02252 1.22941 1.00240 0.93147 0.86149 1.88053 1.81503 1.20889 1.39292 1.21870 0.93875 0.83397 0.99306 0.88914 1.22246 0.93885 1.03882 1.02207 1.20598 0.85051 0.80908 0.82230 1.90656 1.43879 1.65124 1.45513 1.48495 1.29744 1.04248 1.51988 1.22317 0.91820 0.89917 0.96486 1.22527 0.96540 0.94184 0.99063 0.91133 1.21566 1.01463 0.96756 0.98728 1.21431 0.94168 0.88122 0.90162 0.90887 1.42479 1.13261 1.54558 1.25743 1.19586 0.91411 1.20749 1.05296 0.89945 1.25497 1.00613 1.02178 0.97973 1.69805 1.32764 1.44099 1.15151 0.85301 0.80048 0.78375 0.76548 1.22878 1.20509 1.20179 1.23189 0.92717 0.91418 0.97187 0.93477 0.92478 0.88685 0.91546 0.92874 0.88767 0.92167 0.92770 0.88487 0.88773 0.90173 0.91733 0.91273 0.89939 0.93228 0.91139 0.91320 0.79273 0.94132 0.92182 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.05 0.92 6.66 71.98 0.48 1.40 16 3 O -0.42 -10.75 10.31 -144.34 -1.49 -12.23 16 4 C 0.06 1.22 6.32 71.98 0.45 1.67 16 5 C 0.05 1.10 6.13 71.98 0.44 1.54 16 6 O -0.38 -11.41 9.52 -125.76 -1.20 -12.60 16 7 C 0.08 2.15 2.53 29.85 0.08 2.23 16 8 H 0.09 2.43 7.49 -2.39 -0.02 2.41 16 9 C -0.16 -3.62 9.44 71.98 0.68 -2.94 16 10 C 0.52 18.19 7.17 87.66 0.63 18.82 16 11 O -0.57 -24.33 16.84 15.71 0.26 -24.07 16 12 N -0.61 -19.45 3.33 -811.81 -2.70 -22.15 16 13 C 0.12 3.43 6.36 86.86 0.55 3.99 16 14 C -0.10 -3.14 3.25 -9.40 -0.03 -3.17 16 15 H 0.07 2.35 8.00 -2.39 -0.02 2.33 16 16 C -0.13 -3.35 9.31 71.98 0.67 -2.68 16 17 C 0.17 6.00 3.06 46.18 0.14 6.14 16 18 H 0.07 2.50 8.02 -2.39 -0.02 2.48 16 19 N -0.72 -32.72 5.18 -317.34 -1.64 -34.36 16 20 C -0.24 -11.99 9.98 84.03 0.84 -11.15 16 21 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 22 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 23 N -0.97 -56.25 13.06 21.65 0.28 -55.97 16 24 Si 0.97 43.33 29.55 68.60 2.03 45.36 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 28 C 0.08 2.56 5.81 86.73 0.50 3.06 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16 37 H 0.10 1.43 7.98 -2.39 -0.02 1.41 16 38 H 0.09 1.57 7.98 -2.39 -0.02 1.55 16 39 H 0.08 1.73 5.52 -2.38 -0.01 1.72 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 42 H 0.08 2.18 7.99 -2.39 -0.02 2.16 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 46 H 0.37 18.77 7.71 -92.71 -0.72 18.05 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.06 2.10 7.82 -2.39 -0.02 2.09 16 49 H 0.08 2.30 6.04 -2.39 -0.01 2.28 16 Total: -1.00 -70.17 397.26 2.39 -67.78 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.20 Total: 34.52 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.64 Total: 13.73 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -4.06 Total: -112.47 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -2.42 Total: -48.91 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.17 2.39 -67.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216830747.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.835 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds