Wall clock time and date at job start Tue Mar 31 2020 10:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47622 * 2 1 4 4 C 1.42899 * 114.00603 * 181.54368 * 3 2 1 5 5 H 1.09008 * 109.46485 * 339.62937 * 4 3 2 6 6 C 1.52998 * 109.47206 * 219.63170 * 4 3 2 7 7 C 1.50696 * 109.47160 * 64.99576 * 6 4 3 8 8 O 1.21284 * 120.00287 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00115 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00452 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.63577 * 34.29619 * 10 9 7 12 12 C 1.54324 * 110.72144 * 271.16141 * 10 9 7 13 13 N 1.47020 * 107.27021 * 219.44020 * 12 10 9 14 14 C 1.36934 * 125.64907 * 178.97089 * 13 12 10 15 15 H 1.08001 * 119.99915 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99840 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00293 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99795 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46875 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47004 * 119.99955 * 18 16 14 21 21 H 1.48498 * 109.46997 * 240.00243 * 18 16 14 22 22 C 1.47427 * 108.70414 * 358.94230 * 13 12 10 23 23 C 1.55126 * 104.94426 * 23.99968 * 22 13 12 24 24 H 1.08998 * 111.16462 * 205.13409 * 23 22 13 25 25 O 1.42901 * 110.93290 * 81.21591 * 23 22 13 26 26 C 1.52996 * 109.47134 * 99.62606 * 4 3 2 27 27 C 1.53002 * 109.47182 * 294.54418 * 26 4 3 28 28 C 1.52996 * 109.46957 * 54.54792 * 26 4 3 29 29 H 1.09004 * 109.47547 * 59.99494 * 1 2 3 30 30 H 1.08994 * 109.47732 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46746 * 300.00032 * 1 2 3 32 32 H 1.09004 * 109.46746 * 239.99968 * 2 1 3 33 33 H 1.08994 * 109.47534 * 120.00337 * 2 1 3 34 34 H 1.09003 * 109.47039 * 184.99412 * 6 4 3 35 35 H 1.08995 * 109.46830 * 304.99836 * 6 4 3 36 36 H 0.97003 * 120.00110 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.88125 * 338.85885 * 12 10 9 38 38 H 1.08995 * 109.88412 * 100.02581 * 12 10 9 39 39 H 0.97001 * 120.00132 * 179.97438 * 17 16 14 40 40 H 1.08992 * 110.37154 * 142.96690 * 22 13 12 41 41 H 1.09003 * 110.36371 * 265.18142 * 22 13 12 42 42 H 0.96699 * 113.99713 * 67.96725 * 25 23 22 43 43 H 1.09002 * 109.46794 * 174.54662 * 26 4 3 44 44 H 1.08994 * 109.47315 * 305.83559 * 27 26 4 45 45 H 1.08999 * 109.47044 * 65.84494 * 27 26 4 46 46 H 1.09005 * 109.46932 * 185.83924 * 27 26 4 47 47 H 1.09000 * 109.47489 * 59.99577 * 28 26 4 48 48 H 1.09006 * 109.47332 * 179.97438 * 28 26 4 49 49 H 1.09002 * 109.47262 * 299.99583 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4305 1.4603 -0.0352 5 1 3.8775 0.5253 0.3030 6 6 3.8745 2.5997 0.8842 7 6 3.5371 2.2540 2.3116 8 8 2.9952 1.1998 2.5685 9 7 3.8374 3.1163 3.3029 10 6 3.5089 2.7806 4.6906 11 1 3.6109 1.7088 4.8610 12 6 2.0843 3.2565 5.0450 13 7 2.1289 3.7836 6.4167 14 6 1.0713 4.3232 7.0991 15 1 0.1013 4.3873 6.6286 16 6 1.2459 4.7868 8.3958 17 7 2.4279 4.7082 8.9693 18 14 -0.1969 5.5223 9.3269 19 1 -1.4070 5.4949 8.4664 20 1 -0.4473 4.7301 10.5578 21 1 0.1164 6.9260 9.6967 22 6 3.5004 3.6343 6.9363 23 6 4.4022 3.5805 5.6752 24 1 5.3321 3.0494 5.8787 25 8 4.6635 4.8944 5.1778 26 6 3.8836 1.7538 -1.4667 27 6 3.5604 0.5544 -2.3600 28 6 3.1515 2.9913 -1.9897 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.9509 2.7441 0.7900 35 1 3.3586 3.5171 0.6009 36 1 4.2712 3.9594 3.0976 37 1 1.7738 4.0419 4.3559 38 1 1.3896 2.4183 4.9924 39 1 2.5500 5.0326 9.8753 40 1 3.7660 4.4896 7.5574 41 1 3.5917 2.7096 7.5061 42 1 5.2182 5.4320 5.7595 43 1 4.9583 1.9358 -1.4775 44 1 3.9969 -0.3470 -1.9300 45 1 2.4793 0.4360 -2.4322 46 1 3.9750 0.7200 -3.3545 47 1 3.3817 3.8457 -1.3532 48 1 3.4746 3.2008 -3.0095 49 1 2.0768 2.8093 -1.9789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219797963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:02 Heat of formation + Delta-G solvation = -116.860340 kcal Electronic energy + Delta-G solvation = -27795.846897 eV Core-core repulsion = 23951.580953 eV Total energy + Delta-G solvation = -3844.265944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93895 -38.69812 -37.54052 -34.99640 -34.70641 -33.83798 -31.89069 -31.41956 -30.09230 -28.41074 -27.36917 -26.91349 -24.76355 -23.79747 -22.65859 -20.73104 -20.37801 -19.99903 -19.65149 -17.43662 -16.94444 -16.69072 -16.56205 -15.92674 -15.39979 -14.84844 -14.75557 -14.47171 -14.34374 -14.07496 -13.79963 -13.57450 -13.19826 -12.92147 -12.85793 -12.67472 -12.47835 -12.28595 -12.14947 -11.95976 -11.73062 -11.61100 -11.36542 -11.29843 -11.04129 -11.03143 -10.85806 -10.81909 -10.60781 -10.56996 -10.32272 -9.99932 -9.82076 -9.53034 -9.31998 -9.18195 -8.68151 -8.58731 -6.82275 -5.67643 -3.07045 2.95353 3.39985 3.43489 3.46599 3.49390 3.74563 4.48306 4.56151 4.59362 4.71191 4.80502 4.99070 5.12025 5.22050 5.25092 5.34577 5.35985 5.37444 5.41854 5.45126 5.49407 5.51556 5.55616 5.62599 5.71626 5.76704 5.77697 5.82012 5.90920 5.96164 6.05045 6.08783 6.11210 6.18091 6.23659 6.32042 6.63973 6.75800 7.02092 7.28302 7.34348 7.59166 7.74039 7.92459 8.14385 8.33401 8.59094 9.20442 9.81453 10.45074 11.37643 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.003038 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.131759 B = 9214.053934 C = 9970.036258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.113 3.887 5 H 0.067 0.933 6 C -0.145 4.145 7 C 0.512 3.488 8 O -0.541 6.541 9 N -0.711 5.711 10 C 0.144 3.856 11 H 0.098 0.902 12 C 0.132 3.868 13 N -0.597 5.597 14 C -0.214 4.214 15 H 0.078 0.922 16 C -0.014 4.014 17 N -0.927 5.927 18 Si 0.916 3.084 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.127 3.873 23 C 0.067 3.933 24 H 0.058 0.942 25 O -0.561 6.561 26 C -0.115 4.115 27 C -0.149 4.149 28 C -0.143 4.143 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.406 0.594 37 H 0.029 0.971 38 H 0.027 0.973 39 H 0.251 0.749 40 H 0.115 0.885 41 H 0.021 0.979 42 H 0.378 0.622 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.049 0.951 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -5.684 -20.215 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.286 6.286 4 C 0.054 3.946 5 H 0.085 0.915 6 C -0.185 4.185 7 C 0.298 3.702 8 O -0.418 6.418 9 N -0.363 5.363 10 C 0.039 3.961 11 H 0.116 0.884 12 C 0.005 3.995 13 N -0.323 5.323 14 C -0.342 4.342 15 H 0.096 0.904 16 C -0.209 4.209 17 N -0.577 5.577 18 Si 0.747 3.253 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.002 3.998 23 C 0.006 3.994 24 H 0.075 0.925 25 O -0.367 6.367 26 C -0.134 4.134 27 C -0.206 4.206 28 C -0.200 4.200 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.242 0.758 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.132 0.868 41 H 0.039 0.961 42 H 0.226 0.774 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.139 -6.416 -20.316 22.172 hybrid contribution -0.010 0.730 0.972 1.216 sum 6.128 -5.685 -19.344 21.073 Atomic orbital electron populations 1.21711 0.94320 1.01784 1.02867 1.22532 0.95110 0.84131 0.99939 1.87875 1.19733 1.26277 1.94716 1.21738 0.82766 0.97565 0.92544 0.91461 1.21928 1.02920 1.01393 0.92252 1.20512 0.78434 0.84171 0.87067 1.90666 1.42122 1.24716 1.84286 1.45858 1.61752 1.22142 1.06508 1.22086 0.95713 0.98925 0.79417 0.88426 1.21586 0.93480 0.96166 0.88224 1.44300 1.06881 1.70984 1.10151 1.19159 0.88777 1.31129 0.95144 0.90372 1.24756 0.97316 1.01855 0.96933 1.69731 1.20833 1.53096 1.14053 0.85963 0.81256 0.78474 0.79634 1.20508 1.21785 1.21768 1.22621 0.83341 1.02457 0.91415 1.23621 0.96596 0.83117 0.96038 0.92466 1.86241 1.74560 1.25971 1.49902 1.21618 1.00190 0.96506 0.95060 1.21907 1.02119 0.97368 0.99235 1.21757 1.01466 0.96743 1.00020 0.92441 0.91584 0.91685 0.93925 0.92651 0.88175 0.88010 0.75850 0.95301 0.95530 0.93823 0.86772 0.96103 0.77411 0.90582 0.92924 0.92032 0.92677 0.92580 0.93236 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.16 0.38 -1.27 16 2 C 0.06 0.71 5.96 37.16 0.22 0.93 16 3 O -0.37 -4.88 8.14 -49.64 -0.40 -5.28 16 4 C 0.11 1.26 1.50 -26.73 -0.04 1.22 16 5 H 0.07 0.80 7.52 -51.92 -0.39 0.41 16 6 C -0.14 -1.61 5.05 -27.89 -0.14 -1.75 16 7 C 0.51 7.91 7.71 -10.99 -0.08 7.82 16 8 O -0.54 -10.17 14.68 -8.85 -0.13 -10.30 16 9 N -0.71 -11.20 5.08 -52.03 -0.26 -11.47 16 10 C 0.14 2.73 3.15 -66.09 -0.21 2.52 16 11 H 0.10 1.90 7.62 -51.93 -0.40 1.51 16 12 C 0.13 3.04 7.00 -3.06 -0.02 3.02 16 13 N -0.60 -15.67 3.40 -169.94 -0.58 -16.25 16 14 C -0.21 -6.10 10.27 -15.06 -0.15 -6.26 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 17 N -0.93 -26.74 10.09 55.49 0.56 -26.18 16 18 Si 0.92 22.35 29.55 -169.99 -5.02 17.33 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.13 3.02 5.62 -2.41 -0.01 3.01 16 23 C 0.07 1.23 4.31 -24.47 -0.11 1.12 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 O -0.56 -9.56 12.23 -35.23 -0.43 -9.99 16 26 C -0.11 -0.99 2.75 -90.62 -0.25 -1.24 16 27 C -0.15 -1.18 8.01 37.16 0.30 -0.88 16 28 C -0.14 -1.23 8.75 37.16 0.33 -0.91 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.43 5.84 -51.93 -0.30 0.12 16 33 H 0.06 0.76 7.80 -51.93 -0.40 0.35 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.08 6.83 -51.93 -0.35 0.72 16 36 H 0.41 5.75 7.58 -40.82 -0.31 5.44 16 37 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.11 2.98 5.87 -51.93 -0.31 2.67 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.38 5.18 9.12 45.56 0.42 5.60 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.47 6.69 -51.93 -0.35 0.12 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.65 7.55 -51.93 -0.39 0.26 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -32.98 383.09 -8.13 -41.11 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.74 Total: 8.41 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 0.11 Total: 6.84 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.28 Total: -53.89 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.97 Total: -25.57 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.98 -8.13 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219797963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.754 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds